Wall clock time and date at job start Tue Mar 31 2020 17:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39833 * 126.45777 * 2 1 4 4 C 1.35454 * 107.86852 * 179.97438 * 3 2 1 5 5 N 1.35534 * 108.86741 * 359.73639 * 4 3 2 6 6 H 0.97001 * 125.67965 * 180.30599 * 5 4 3 7 7 C 1.37645 * 108.64553 * 0.43161 * 5 4 3 8 8 C 1.46679 * 126.23751 * 179.83340 * 7 5 4 9 9 O 1.21690 * 120.00680 * 179.69041 * 8 7 5 10 10 N 1.34784 * 119.99544 * 359.69096 * 8 7 5 11 11 C 1.48038 * 126.94734 * 0.02562 * 10 8 7 12 12 C 1.56025 * 105.15235 * 181.87292 * 11 10 8 13 13 H 1.09003 * 116.90674 * 159.28760 * 12 11 10 14 14 C 1.57084 * 99.59661 * 32.86560 * 12 11 10 15 15 C 1.49281 * 126.92817 * 180.02562 * 10 8 7 16 16 H 1.09002 * 116.75257 * 16.43692 * 15 10 8 17 17 C 1.56011 * 104.12592 * 246.86711 * 15 10 8 18 18 N 1.48282 * 105.16061 * 288.84485 * 17 15 10 19 19 C 1.46897 * 110.99993 * 122.49079 * 18 17 15 20 20 C 1.50709 * 109.46618 * 76.51853 * 19 18 17 21 21 O 1.21283 * 119.99859 * 0.02562 * 20 19 18 22 22 N 1.34783 * 119.99494 * 179.97438 * 20 19 18 23 23 C 1.37093 * 119.99191 * 179.97438 * 22 20 19 24 24 H 1.08002 * 120.00634 * 0.02562 * 23 22 20 25 25 C 1.38953 * 119.99490 * 179.97438 * 23 22 20 26 26 N 1.31410 * 119.99690 * 179.97438 * 25 23 22 27 27 Si 1.86802 * 119.99985 * 0.02562 * 25 23 22 28 28 H 1.48494 * 109.47306 * 89.99720 * 27 25 23 29 29 H 1.48499 * 109.46878 * 209.99443 * 27 25 23 30 30 H 1.48500 * 109.47026 * 329.99255 * 27 25 23 31 31 H 1.08997 * 109.46988 * 270.04102 * 1 2 3 32 32 H 1.08997 * 109.47221 * 30.04081 * 1 2 3 33 33 H 1.09004 * 109.47272 * 150.04324 * 1 2 3 34 34 H 1.08002 * 126.06534 * 359.93384 * 3 2 1 35 35 H 1.07998 * 125.56680 * 180.02562 * 4 3 2 36 36 H 1.08998 * 110.24485 * 62.97336 * 11 10 8 37 37 H 1.08998 * 110.34797 * 300.82132 * 11 10 8 38 38 H 1.08996 * 112.36045 * 64.33766 * 14 12 11 39 39 H 1.09004 * 112.35243 * 191.75081 * 14 12 11 40 40 H 1.09000 * 110.32180 * 169.89513 * 17 15 10 41 41 H 1.08998 * 110.32274 * 47.79616 * 17 15 10 42 42 H 1.09001 * 109.46793 * 196.51557 * 19 18 17 43 43 H 1.08997 * 109.47605 * 316.51708 * 19 18 17 44 44 H 0.96990 * 119.99989 * 0.02562 * 22 20 19 45 45 H 0.97003 * 119.99653 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3379 1.1247 0.0000 4 6 3.6218 0.6929 0.0006 5 7 3.6283 -0.6624 0.0068 6 1 4.4190 -1.2243 0.0128 7 6 2.3263 -1.1089 0.0005 8 6 1.8898 -2.5092 0.0007 9 8 0.7027 -2.7766 0.0004 10 7 2.8037 -3.4999 0.0012 11 6 4.2767 -3.3517 0.0022 12 6 4.8332 -4.8085 -0.0467 13 1 5.8576 -4.9337 -0.3975 14 6 3.7090 -5.4895 -0.9070 15 6 2.5348 -4.9683 0.0010 16 1 1.5283 -5.2827 -0.2751 17 6 3.0499 -5.4500 1.3926 18 7 4.5278 -5.3611 1.3110 19 6 5.0619 -4.4899 2.3663 20 6 5.0490 -5.2274 3.6806 21 8 4.6361 -6.3666 3.7328 22 7 5.4974 -4.6211 4.7978 23 6 5.4852 -5.2918 5.9934 24 1 5.1168 -6.3059 6.0401 25 6 5.9479 -4.6670 7.1451 26 7 5.9358 -5.3097 8.2913 27 14 6.5858 -2.9132 7.0643 28 1 5.4655 -1.9675 7.3000 29 1 7.6267 -2.7167 8.1051 30 1 7.1726 -2.6612 5.7236 31 1 -0.3633 0.0007 1.0276 32 1 -0.3633 0.8896 -0.5144 33 1 -0.3634 -0.8904 -0.5132 34 1 2.0135 2.1548 -0.0010 35 1 4.4972 1.3253 0.0011 36 1 4.6048 -2.8517 0.9134 37 1 4.6020 -2.7927 -0.8752 38 1 3.6601 -5.0872 -1.9188 39 1 3.7851 -6.5769 -0.9027 40 1 2.7421 -6.4796 1.5745 41 1 2.6745 -4.7983 2.1815 42 1 6.0846 -4.2052 2.1194 43 1 4.4447 -3.5951 2.4458 44 1 5.8279 -3.7102 4.7559 45 1 6.2585 -4.8734 9.0953 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318196708.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:42 Heat of formation + Delta-G solvation = 37.417347 kcal Electronic energy + Delta-G solvation = -29260.328642 eV Core-core repulsion = 25280.527586 eV Total energy + Delta-G solvation = -3979.801056 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.90609 -40.94413 -38.57401 -37.98189 -34.41920 -33.82077 -32.73736 -31.78465 -31.39986 -30.11230 -29.56237 -27.24125 -26.82202 -25.23795 -24.07647 -22.74938 -21.47793 -20.70653 -20.16823 -19.38873 -19.13443 -18.42719 -17.76271 -16.92014 -16.71248 -15.89988 -15.59928 -15.21067 -14.97250 -14.73106 -14.49938 -14.11292 -13.72872 -13.65457 -13.38108 -13.19129 -13.04848 -12.92169 -12.77331 -12.59370 -12.49555 -12.43326 -12.32046 -11.96884 -11.82053 -11.76538 -11.53143 -11.37524 -11.27178 -11.03424 -10.64289 -10.12515 -10.00660 -9.59816 -9.10703 -8.99648 -8.66136 -8.36639 -8.21211 -8.11045 -6.33626 -3.85083 1.25149 2.49234 2.51981 2.89733 2.97240 3.03057 3.11402 3.17364 3.59178 3.68931 3.95372 4.06767 4.13939 4.42380 4.50435 4.69218 4.72933 4.73928 4.78388 4.91377 4.96248 5.08849 5.17202 5.26329 5.38882 5.45290 5.53015 5.55422 5.57062 5.58508 5.70441 5.74492 5.76310 5.83109 5.92392 5.98558 6.17169 6.18722 6.51986 6.73817 6.75233 6.89061 7.10425 7.25301 7.54805 7.93928 8.11109 8.57083 8.92567 9.39171 9.79799 10.79603 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011231 B = 0.003802 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.523553 B = 7363.639590 C = 8809.346098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.073 4.073 3 C -0.212 4.212 4 C 0.023 3.977 5 N -0.545 5.545 6 H 0.415 0.585 7 C -0.058 4.058 8 C 0.607 3.393 9 O -0.525 6.525 10 N -0.623 5.623 11 C 0.048 3.952 12 C 0.056 3.944 13 H 0.139 0.861 14 C -0.132 4.132 15 C 0.111 3.889 16 H 0.131 0.869 17 C 0.039 3.961 18 N -0.485 5.485 19 C 0.031 3.969 20 C 0.453 3.547 21 O -0.555 6.555 22 N -0.592 5.592 23 C -0.304 4.304 24 H 0.120 0.880 25 C 0.042 3.958 26 N -0.881 5.881 27 Si 0.879 3.121 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.271 1.271 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.171 0.829 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.051 0.949 44 H 0.368 0.632 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.958 12.259 -21.862 25.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.236 4.236 4 C -0.113 4.113 5 N -0.144 5.144 6 H 0.257 0.743 7 C -0.170 4.170 8 C 0.398 3.602 9 O -0.402 6.402 10 N -0.358 5.358 11 C -0.077 4.077 12 C -0.053 4.053 13 H 0.157 0.843 14 C -0.170 4.170 15 C 0.008 3.992 16 H 0.149 0.851 17 C -0.089 4.089 18 N -0.208 5.208 19 C -0.101 4.101 20 C 0.238 3.762 21 O -0.435 6.435 22 N -0.232 5.232 23 C -0.433 4.433 24 H 0.138 0.862 25 C -0.161 4.161 26 N -0.521 5.521 27 Si 0.705 3.295 28 H -0.197 1.197 29 H -0.201 1.201 30 H -0.197 1.197 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.161 0.839 35 H 0.188 0.812 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.116 0.884 41 H 0.081 0.919 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.201 0.799 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.551 10.737 -21.467 24.138 hybrid contribution 0.932 2.301 0.251 2.495 sum -1.619 13.039 -21.216 24.955 Atomic orbital electron populations 1.20347 0.89263 1.02779 1.02362 1.19968 0.95919 0.90702 1.01591 1.20810 0.91799 0.98799 1.12203 1.22055 0.99650 0.83131 1.06480 1.42521 1.07471 1.07415 1.57023 0.74305 1.20157 0.83833 0.93267 1.19776 1.16707 0.84882 0.82347 0.76238 1.90815 1.15350 1.82935 1.51066 1.49211 1.05786 1.06840 1.73961 1.23503 0.81444 1.01243 1.01477 1.24794 1.00054 0.89230 0.91192 0.84339 1.23991 0.93286 1.02125 0.97585 1.24226 1.00285 0.78174 0.96482 0.85119 1.23681 0.87025 1.03090 0.95126 1.64637 1.10769 1.45667 0.99753 1.22197 1.00642 0.94463 0.92823 1.19546 0.84385 0.88068 0.84183 1.90567 1.49541 1.18030 1.85397 1.42194 1.58161 1.14582 1.08261 1.19422 1.40306 1.01050 0.82526 0.86243 1.25024 0.97735 0.98241 0.95081 1.69618 1.46202 1.37243 0.99000 0.86693 0.79597 0.84948 0.78251 1.19672 1.20084 1.19652 0.91417 0.92012 0.90215 0.83941 0.81182 0.90449 0.91161 0.89870 0.87969 0.88366 0.91917 0.89204 0.93105 0.79916 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.83 36.00 0.35 -0.67 16 2 C -0.07 -0.89 6.21 -104.16 -0.65 -1.54 16 3 C -0.21 -2.08 10.76 -39.98 -0.43 -2.51 16 4 C 0.02 0.19 11.89 -16.91 -0.20 -0.01 16 5 N -0.54 -5.11 5.70 -9.39 -0.05 -5.16 16 6 H 0.42 3.02 5.06 -40.82 -0.21 2.81 16 7 C -0.06 -0.73 6.91 -81.98 -0.57 -1.29 16 8 C 0.61 8.58 7.87 -12.85 -0.10 8.48 16 9 O -0.53 -8.84 15.16 5.20 0.08 -8.76 16 10 N -0.62 -7.39 2.95 -158.02 -0.47 -7.86 16 11 C 0.05 0.43 4.15 -1.58 -0.01 0.43 16 12 C 0.06 0.53 5.21 -62.29 -0.32 0.21 16 13 H 0.14 1.00 8.14 -51.93 -0.42 0.57 16 14 C -0.13 -1.17 6.81 -22.17 -0.15 -1.32 16 15 C 0.11 1.29 5.24 -62.43 -0.33 0.96 16 16 H 0.13 1.49 8.08 -51.93 -0.42 1.07 16 17 C 0.04 0.58 5.43 -1.45 -0.01 0.57 16 18 N -0.48 -6.93 4.84 -218.15 -1.06 -7.98 16 19 C 0.03 0.48 4.13 -4.97 -0.02 0.46 16 20 C 0.45 10.11 7.63 -10.98 -0.08 10.02 16 21 O -0.55 -14.70 15.47 5.55 0.09 -14.61 16 22 N -0.59 -13.97 5.09 -10.96 -0.06 -14.03 16 23 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 24 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 25 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 26 N -0.88 -25.73 13.96 55.50 0.77 -24.95 16 27 Si 0.88 19.29 27.74 -169.99 -4.71 14.57 16 28 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 29 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 30 H -0.27 -5.35 6.52 56.52 0.37 -4.99 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.02 6.48 -51.93 -0.34 0.69 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 36 H 0.08 0.72 4.78 -51.93 -0.25 0.47 16 37 H 0.07 0.47 7.17 -51.93 -0.37 0.10 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 41 H 0.06 1.08 7.42 -51.93 -0.39 0.70 16 42 H 0.09 1.16 8.03 -51.93 -0.42 0.74 16 43 H 0.05 0.75 6.11 -51.93 -0.32 0.43 16 44 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 45 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -35.95 358.94 -8.64 -44.59 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -5.88 Total: 12.70 kcal Atomic # 6 Polarization: 8.85 SS G_CDS: -2.76 Total: 6.09 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.86 Total: -59.99 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: 0.16 Total: -23.37 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.95 -8.64 -44.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318196708.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.003 kcal (2) G-P(sol) polarization free energy of solvation -35.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds