Wall clock time and date at job start Tue Mar 31 2020 16:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31896 * 119.26442 * 2 1 4 4 C 1.32406 * 121.70448 * 180.26007 * 3 2 1 5 5 N 1.38130 * 132.81276 * 179.25064 * 4 3 2 6 6 H 0.97000 * 125.18582 * 359.96008 * 5 4 3 7 7 N 1.39815 * 109.63607 * 179.97438 * 5 4 3 8 8 C 1.46502 * 125.30620 * 179.97438 * 7 5 4 9 9 C 1.34877 * 109.37827 * 359.97438 * 7 5 4 10 10 O 1.21603 * 126.49153 * 179.97438 * 9 7 5 11 11 C 1.40678 * 119.90772 * 359.50884 * 4 3 2 12 12 C 1.39352 * 119.45103 * 0.06677 * 11 4 3 13 13 C 1.50698 * 120.95217 * 180.18676 * 12 11 4 14 14 C 1.38351 * 119.25707 * 179.59858 * 2 1 3 15 15 C 1.50703 * 120.31840 * 359.97171 * 14 2 1 16 16 C 1.50696 * 109.46902 * 270.02533 * 15 14 2 17 17 O 1.21283 * 120.00256 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99881 * 180.02562 * 16 15 14 19 19 C 1.46504 * 120.00078 * 180.02562 * 18 16 15 20 20 C 1.52997 * 109.46769 * 179.97438 * 19 18 16 21 21 C 1.50709 * 109.46802 * 179.97438 * 20 19 18 22 22 H 1.07995 * 119.99776 * 359.97438 * 21 20 19 23 23 C 1.37874 * 119.99812 * 179.97438 * 21 20 19 24 24 N 1.31517 * 120.00356 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99839 * 179.97438 * 23 21 20 26 26 H 1.48494 * 109.47198 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47149 * 120.00410 * 25 23 21 28 28 H 1.48498 * 109.47460 * 240.00297 * 25 23 21 29 29 H 1.09004 * 109.46919 * 270.40646 * 1 2 3 30 30 H 1.08997 * 109.47104 * 30.40409 * 1 2 3 31 31 H 1.08999 * 109.47228 * 150.41010 * 1 2 3 32 32 H 1.09000 * 109.46617 * 270.01382 * 8 7 5 33 33 H 1.08991 * 109.47527 * 30.02018 * 8 7 5 34 34 H 1.09002 * 109.46738 * 150.02204 * 8 7 5 35 35 H 1.08996 * 109.47453 * 90.00227 * 13 12 11 36 36 H 1.08997 * 109.47248 * 210.00208 * 13 12 11 37 37 H 1.09002 * 109.47331 * 330.00176 * 13 12 11 38 38 H 1.09002 * 109.46915 * 30.02229 * 15 14 2 39 39 H 1.09000 * 109.46998 * 150.02615 * 15 14 2 40 40 H 0.96999 * 120.00156 * 359.97438 * 18 16 15 41 41 H 1.08994 * 109.47033 * 299.99682 * 19 18 16 42 42 H 1.09000 * 109.47197 * 59.99853 * 19 18 16 43 43 H 1.08999 * 109.47678 * 299.99691 * 20 19 18 44 44 H 1.09000 * 109.47255 * 60.00044 * 20 19 18 45 45 H 0.97000 * 120.00245 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1518 1.1506 0.0000 4 6 3.4746 1.2070 -0.0051 5 7 4.3693 2.2593 -0.0196 6 1 4.1274 3.1986 -0.0295 7 7 5.6769 1.7643 -0.0181 8 6 6.8920 2.5826 -0.0314 9 6 5.6450 0.4160 -0.0024 10 8 6.6052 -0.3301 0.0027 11 6 4.2273 0.0186 -0.0003 12 6 3.5688 -1.2095 0.0085 13 6 4.3416 -2.5033 0.0181 14 6 2.1832 -1.2070 0.0085 15 6 1.4200 -2.5065 0.0182 16 6 1.1657 -2.9289 1.4422 17 8 1.5653 -2.2427 2.3589 18 7 0.4951 -4.0700 1.6971 19 6 0.2474 -4.4804 3.0815 20 6 -0.5272 -5.7998 3.0913 21 6 -0.7815 -6.2223 4.5154 22 1 -0.4258 -5.6112 5.3316 23 6 -1.4683 -7.3891 4.7760 24 7 -1.9011 -8.1335 3.7820 25 14 -1.7829 -7.9132 6.5411 26 1 -1.1976 -6.9106 7.4670 27 1 -3.2461 -8.0084 6.7760 28 1 -1.1555 -9.2371 6.7837 29 1 -0.3633 0.0073 1.0277 30 1 -0.3633 0.8863 -0.5201 31 1 -0.3633 -0.8936 -0.5074 32 1 7.1899 2.7738 -1.0624 33 1 6.6981 3.5294 0.4724 34 1 7.6923 2.0531 0.4857 35 1 4.5276 -2.8078 1.0480 36 1 3.7640 -3.2753 -0.4903 37 1 5.2921 -2.3626 -0.4965 38 1 0.4685 -2.3729 -0.4966 39 1 2.0034 -3.2743 -0.4899 40 1 0.1759 -4.6190 0.9639 41 1 1.1986 -4.6134 3.5967 42 1 -0.3366 -3.7128 3.5891 43 1 -1.4785 -5.6665 2.5761 44 1 0.0564 -6.5676 2.5835 45 1 -2.3846 -8.9542 3.9654 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320204084.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:49 Heat of formation + Delta-G solvation = 16.784307 kcal Electronic energy + Delta-G solvation = -27931.310447 eV Core-core repulsion = 23950.614676 eV Total energy + Delta-G solvation = -3980.695771 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.99419 -39.90664 -38.71608 -37.36854 -34.93550 -34.41387 -33.84020 -32.84156 -31.52383 -29.96013 -29.47516 -28.60751 -26.93294 -26.33649 -24.59300 -22.39122 -21.97559 -20.96327 -20.61534 -20.05753 -18.55703 -17.66246 -16.92397 -16.52592 -16.30973 -16.23901 -15.92351 -15.47707 -14.95913 -14.77034 -14.62486 -14.38920 -13.89768 -13.67160 -13.49208 -13.32457 -13.24482 -13.08135 -13.05302 -12.87634 -12.73234 -12.40500 -12.29485 -11.89951 -11.53011 -11.47182 -11.19701 -11.04134 -10.63597 -10.55238 -10.33068 -9.83057 -9.69950 -9.48817 -9.43634 -9.23877 -9.11145 -8.54103 -8.35000 -7.96560 -6.09921 -4.12471 0.59709 1.11617 1.14441 2.56465 3.01293 3.05423 3.28200 3.35868 3.40579 3.48063 3.86211 4.14242 4.18033 4.42073 4.43552 4.57182 4.67838 4.76306 4.81477 4.97610 5.03539 5.15369 5.24457 5.27332 5.31506 5.32102 5.42806 5.51177 5.57928 5.68350 5.78033 5.89199 6.05469 6.23683 6.33056 6.35592 6.40150 6.74521 6.83692 6.92818 6.97200 7.51912 7.61613 7.71120 7.82943 7.88691 8.02718 8.27866 8.67550 8.93891 9.52516 11.01630 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.002229 C = 0.002147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.626751 B =12558.840465 C =13040.797745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.231 3.769 3 N -0.527 5.527 4 C 0.406 3.594 5 N -0.499 5.499 6 H 0.442 0.558 7 N -0.412 5.412 8 C 0.105 3.895 9 C 0.567 3.433 10 O -0.518 6.518 11 C -0.290 4.290 12 C 0.091 3.909 13 C -0.129 4.129 14 C -0.171 4.171 15 C -0.098 4.098 16 C 0.506 3.494 17 O -0.542 6.542 18 N -0.723 5.723 19 C 0.122 3.878 20 C 0.012 3.988 21 C -0.520 4.520 22 H 0.059 0.941 23 C 0.058 3.942 24 N -0.894 5.894 25 Si 0.896 3.104 26 H -0.272 1.272 27 H -0.283 1.283 28 H -0.283 1.283 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.105 0.895 40 H 0.398 0.602 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.023 0.977 44 H 0.022 0.978 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.310 20.977 -14.517 27.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.090 3.910 3 N -0.246 5.246 4 C 0.167 3.833 5 N -0.230 5.230 6 H 0.288 0.712 7 N -0.236 5.236 8 C -0.036 4.036 9 C 0.358 3.642 10 O -0.393 6.393 11 C -0.300 4.300 12 C 0.082 3.918 13 C -0.185 4.185 14 C -0.175 4.175 15 C -0.139 4.139 16 C 0.291 3.709 17 O -0.420 6.420 18 N -0.374 5.374 19 C 0.000 4.000 20 C -0.025 4.025 21 C -0.559 4.559 22 H 0.078 0.922 23 C -0.143 4.143 24 N -0.533 5.533 25 Si 0.724 3.276 26 H -0.196 1.196 27 H -0.209 1.209 28 H -0.209 1.209 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.123 0.877 40 H 0.231 0.769 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.883 21.827 -13.860 28.456 hybrid contribution -0.037 -0.647 0.684 0.942 sum 11.847 21.181 -13.176 27.615 Atomic orbital electron populations 1.20931 0.88016 1.03804 1.04241 1.20874 0.96374 0.85966 0.87750 1.66437 1.05358 1.29938 1.22828 1.18058 0.88215 0.85537 0.91491 1.42969 0.93689 1.06345 1.80029 0.71152 1.47531 0.95647 1.06111 1.74324 1.21921 0.82835 0.95454 1.03355 1.17607 0.88996 0.79974 0.77592 1.90839 1.41556 1.54074 1.52825 1.20412 0.94713 0.94382 1.20526 1.19538 0.92295 0.93745 0.86205 1.21007 1.00395 0.93029 1.04074 1.19632 0.92681 0.95285 1.09948 1.20635 1.01906 0.95221 0.96103 1.20412 0.78502 0.81381 0.90638 1.90699 1.51075 1.53533 1.46664 1.46334 1.56671 1.23610 1.10739 1.21702 0.99996 0.98732 0.79566 1.19328 0.95110 0.89956 0.98125 1.21094 1.35885 1.07029 0.91910 0.92246 1.24995 0.95527 0.96414 0.97393 1.69960 1.38085 1.14380 1.30864 0.86469 0.77930 0.78552 0.84699 1.19608 1.20944 1.20935 0.89152 0.90036 0.89735 0.91118 0.89938 0.88240 0.89325 0.90405 0.89820 0.87507 0.87719 0.76887 0.92664 0.92640 0.95911 0.95932 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.75 36.01 0.35 -0.73 16 2 C 0.23 2.88 6.78 -82.52 -0.56 2.32 16 3 N -0.53 -6.84 10.29 -8.43 -0.09 -6.92 16 4 C 0.41 5.14 8.46 -155.27 -1.31 3.82 16 5 N -0.50 -4.64 7.23 31.27 0.23 -4.41 16 6 H 0.44 2.56 8.96 -182.81 -1.64 0.92 16 7 N -0.41 -4.06 3.98 -68.22 -0.27 -4.33 16 8 C 0.10 0.55 11.33 59.85 0.68 1.23 16 9 C 0.57 7.74 8.10 -12.56 -0.10 7.64 16 10 O -0.52 -8.20 16.74 5.27 0.09 -8.11 16 11 C -0.29 -4.05 6.16 -104.91 -0.65 -4.69 16 12 C 0.09 1.23 5.94 -104.09 -0.62 0.61 16 13 C -0.13 -1.57 9.54 36.00 0.34 -1.22 16 14 C -0.17 -2.18 4.39 -104.46 -0.46 -2.64 16 15 C -0.10 -1.08 5.05 -29.04 -0.15 -1.23 16 16 C 0.51 7.91 7.82 -10.99 -0.09 7.82 16 17 O -0.54 -10.80 16.03 5.55 0.09 -10.72 16 18 N -0.72 -11.71 5.56 -60.30 -0.33 -12.05 16 19 C 0.12 2.53 5.61 -4.04 -0.02 2.50 16 20 C 0.01 0.30 5.09 -27.88 -0.14 0.15 16 21 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 22 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 23 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 24 N -0.89 -25.83 13.29 55.43 0.74 -25.10 16 25 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.64 5.90 -51.93 -0.31 0.33 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.10 0.55 8.05 -51.93 -0.42 0.13 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 36 H 0.08 0.76 6.09 -51.93 -0.32 0.44 16 37 H 0.08 1.03 7.09 -51.93 -0.37 0.66 16 38 H 0.11 0.87 5.92 -51.93 -0.31 0.56 16 39 H 0.10 0.93 6.08 -51.93 -0.32 0.62 16 40 H 0.40 5.38 8.47 -40.82 -0.35 5.03 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 378.45 15.07 5.70 5.70 Total: -1.00 -36.55 378.45 -9.37 -45.92 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.36 Total: 1.24 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -3.13 Total: 2.51 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.27 Total: -52.81 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.18 Total: -18.82 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.55 -9.37 -45.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320204084.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.703 kcal (2) G-P(sol) polarization free energy of solvation -36.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds