Wall clock time and date at job start Tue Mar 31 2020 17:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40423 * 107.86638 * 179.90771 * 3 2 1 5 5 N 1.40073 * 125.97700 * 180.11977 * 4 3 2 6 6 C 1.34777 * 120.00007 * 0.25964 * 5 4 3 7 7 O 1.21715 * 120.00160 * 359.97438 * 6 5 4 8 8 C 1.46628 * 120.00248 * 179.97438 * 6 5 4 9 9 C 1.36561 * 125.99049 * 179.97438 * 8 6 5 10 10 C 1.40366 * 106.70744 * 180.02562 * 9 8 6 11 11 C 1.35130 * 107.11709 * 0.02562 * 10 9 8 12 12 C 1.50697 * 125.61482 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47566 * 89.99839 * 12 11 10 14 14 C 1.46894 * 111.00340 * 170.00001 * 13 12 11 15 15 C 1.46905 * 110.99821 * 293.95637 * 13 12 11 16 16 O 1.33945 * 108.76568 * 359.73035 * 11 10 9 17 17 N 1.31239 * 108.05045 * 0.36163 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46498 * 125.97410 * 359.96275 * 18 2 1 20 20 C 1.50702 * 109.47036 * 90.00121 * 19 18 2 21 21 H 1.08000 * 120.00135 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99820 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00047 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99927 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46670 * 90.00353 * 24 22 20 26 26 H 1.48501 * 109.47204 * 210.00116 * 24 22 20 27 27 H 1.48500 * 109.46952 * 330.00287 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.07996 * 126.06578 * 0.03842 * 3 2 1 32 32 H 0.97004 * 120.00201 * 180.25053 * 5 4 3 33 33 H 1.08001 * 126.64632 * 0.02781 * 9 8 6 34 34 H 1.08002 * 126.44002 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47050 * 209.99764 * 12 11 10 36 36 H 1.08995 * 109.47042 * 329.99280 * 12 11 10 37 37 H 1.09000 * 109.47069 * 59.99457 * 14 13 12 38 38 H 1.08998 * 109.47132 * 180.02562 * 14 13 12 39 39 H 1.09003 * 109.47145 * 299.99794 * 14 13 12 40 40 H 1.09002 * 109.47083 * 59.99614 * 15 13 12 41 41 H 1.08999 * 109.47274 * 179.97438 * 15 13 12 42 42 H 1.09005 * 109.46740 * 299.99693 * 15 13 12 43 43 H 1.08996 * 109.47070 * 210.00160 * 19 18 2 44 44 H 1.09004 * 109.46994 * 330.00070 * 19 18 2 45 45 H 0.97006 * 119.99856 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6372 0.6545 0.0022 5 7 4.7729 1.4743 0.0052 6 6 4.6362 2.8151 0.0116 7 8 3.5259 3.3136 0.0143 8 6 5.8251 3.6733 0.0154 9 6 5.8291 5.0389 0.0214 10 6 7.1746 5.4385 0.0226 11 6 7.9236 4.3138 0.0167 12 6 9.4297 4.2623 0.0162 13 7 9.9194 4.2386 1.4009 14 6 11.3592 3.9510 1.4453 15 6 9.6130 5.4997 2.0893 16 8 7.1068 3.2522 0.0180 17 7 3.6337 -0.6579 -0.0045 18 7 2.3016 -1.0910 -0.0059 19 6 1.8499 -2.4846 -0.0127 20 6 1.6943 -2.9553 -1.4359 21 1 1.9099 -2.2834 -2.2535 22 6 1.2767 -4.2437 -1.6941 23 7 1.0147 -5.0620 -0.6984 24 14 1.0831 -4.8269 -3.4581 25 1 2.3640 -5.4126 -3.9291 26 1 0.0143 -5.8557 -3.5249 27 1 0.7174 -3.6762 -4.3226 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 0.0006 32 1 5.6579 1.0770 0.0029 33 1 4.9644 5.6860 0.0247 34 1 7.5422 6.4541 0.0273 35 1 9.7623 3.3630 -0.5023 36 1 9.8230 5.1419 -0.4934 37 1 11.9007 4.7212 0.8962 38 1 11.6955 3.9389 2.4820 39 1 11.5497 2.9788 0.9906 40 1 8.5340 5.6535 2.1027 41 1 9.9861 5.4551 3.1125 42 1 10.0913 6.3261 1.5635 43 1 2.5847 -3.1072 0.4976 44 1 0.8915 -2.5584 0.5013 45 1 0.7205 -5.9683 -0.8801 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362422804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:44 Heat of formation + Delta-G solvation = 70.103593 kcal Electronic energy + Delta-G solvation = -27281.357338 eV Core-core repulsion = 23302.973664 eV Total energy + Delta-G solvation = -3978.383674 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.97140 -40.71758 -39.15968 -37.87247 -35.00038 -33.48141 -33.24509 -31.67160 -31.21520 -30.75001 -28.08863 -27.71179 -26.52575 -26.33640 -23.96560 -22.82162 -22.24033 -21.68806 -20.70099 -19.79818 -19.54330 -17.80673 -16.86139 -16.69295 -16.31348 -16.19966 -15.72639 -15.62521 -15.33668 -14.83635 -14.71693 -14.27962 -14.10888 -13.93529 -13.50164 -13.28217 -13.22296 -12.93645 -12.82371 -12.48028 -12.34493 -12.28628 -12.17531 -12.13843 -11.90610 -11.71192 -11.41977 -11.10445 -10.84630 -10.49102 -10.27946 -10.25877 -10.13575 -9.75862 -9.55093 -9.05076 -8.75100 -8.64417 -7.96232 -7.48502 -6.25591 -4.33276 0.79494 1.98319 2.30249 2.64657 2.78673 3.03954 3.22138 3.28323 3.33180 3.52481 3.74367 3.82690 4.22241 4.30940 4.51647 4.62395 4.69258 4.75842 4.86395 4.92125 5.08065 5.10768 5.14057 5.34625 5.41817 5.42725 5.50069 5.52892 5.60626 5.70373 5.92558 6.07233 6.10004 6.18407 6.36918 6.40029 6.45657 6.46932 6.61040 6.80668 6.92119 7.04967 7.37489 7.59513 7.67129 7.88512 8.03262 8.09180 8.62109 8.74639 9.33127 10.81688 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.002197 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.502598 B =12742.891857 C =13578.640625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.289 4.289 4 C 0.262 3.738 5 N -0.619 5.619 6 C 0.609 3.391 7 O -0.496 6.496 8 C -0.066 4.066 9 C -0.116 4.116 10 C -0.215 4.215 11 C 0.030 3.970 12 C 0.127 3.873 13 N -0.545 5.545 14 C 0.025 3.975 15 C 0.016 3.984 16 O -0.152 6.152 17 N -0.315 5.315 18 N -0.315 5.315 19 C 0.258 3.742 20 C -0.536 4.536 21 H 0.065 0.935 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.277 1.277 26 H -0.283 1.283 27 H -0.272 1.272 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.416 0.584 33 H 0.163 0.837 34 H 0.154 0.846 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.029 0.971 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.808 21.595 3.588 27.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 C -0.320 4.320 4 C 0.009 3.991 5 N -0.265 5.265 6 C 0.395 3.605 7 O -0.371 6.371 8 C -0.118 4.118 9 C -0.136 4.136 10 C -0.235 4.235 11 C -0.023 4.023 12 C 0.000 4.000 13 N -0.269 5.269 14 C -0.123 4.123 15 C -0.132 4.132 16 O -0.047 6.047 17 N -0.146 5.146 18 N -0.097 5.097 19 C 0.140 3.860 20 C -0.575 4.575 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.209 1.209 27 H -0.196 1.196 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.177 0.823 32 H 0.252 0.748 33 H 0.181 0.819 34 H 0.172 0.828 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.047 0.953 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.486 19.869 3.887 25.489 hybrid contribution 0.397 0.813 -1.322 1.602 sum 15.882 20.682 2.566 26.203 Atomic orbital electron populations 1.20388 0.87782 1.03943 1.02602 1.21070 0.94981 0.87053 1.00744 1.21239 0.89592 0.99872 1.21287 1.18894 0.86889 0.89635 1.03660 1.42261 1.08198 1.04657 1.71382 1.16376 0.86215 0.80624 0.77311 1.90836 1.23287 1.73837 1.49153 1.21898 0.81937 0.94124 1.13882 1.21907 0.98243 0.93023 1.00471 1.21570 0.92599 0.99335 1.09985 1.22475 0.92799 0.84556 1.02471 1.20583 0.85236 1.03619 0.90583 1.61893 1.16117 1.34707 1.14203 1.22412 0.86091 1.01118 1.02656 1.22538 1.02647 0.88929 0.99044 1.84040 1.15305 1.35266 1.70109 1.77288 0.99992 1.08336 1.28977 1.49036 1.00896 1.07876 1.51893 1.19716 0.96040 0.71243 0.98985 1.21323 1.46851 0.97993 0.91337 0.91715 1.24931 0.94667 0.96037 0.98155 1.69922 1.44897 1.06954 1.31140 0.86352 0.78018 0.78565 0.83737 1.20333 1.20870 1.19643 0.91004 0.89844 0.90548 0.82263 0.74838 0.81946 0.82783 0.88350 0.90960 0.95272 0.90767 0.90840 0.90635 0.90972 0.95267 0.92924 0.92684 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.52 9.89 36.01 0.36 -1.16 16 2 C 0.09 1.98 6.92 -82.28 -0.57 1.41 16 3 C -0.29 -6.02 9.52 -39.83 -0.38 -6.40 16 4 C 0.26 5.50 8.11 -154.45 -1.25 4.25 16 5 N -0.62 -10.56 5.44 -12.33 -0.07 -10.63 16 6 C 0.61 9.80 7.75 -12.88 -0.10 9.70 16 7 O -0.50 -9.03 13.99 5.18 0.07 -8.96 16 8 C -0.07 -0.86 7.13 -36.80 -0.26 -1.13 16 9 C -0.12 -1.27 10.62 -39.39 -0.42 -1.69 16 10 C -0.21 -1.88 9.36 -39.89 -0.37 -2.26 16 11 C 0.03 0.29 6.21 -35.42 -0.22 0.07 16 12 C 0.13 0.87 5.49 -4.98 -0.03 0.84 16 13 N -0.54 -3.98 5.01 -252.72 -1.27 -5.25 16 14 C 0.02 0.13 9.57 60.06 0.57 0.70 16 15 C 0.02 0.10 9.27 60.07 0.56 0.66 16 16 O -0.15 -1.84 10.40 4.97 0.05 -1.79 16 17 N -0.32 -7.45 12.59 31.43 0.40 -7.05 16 18 N -0.31 -7.54 3.59 -58.33 -0.21 -7.75 16 19 C 0.26 6.64 5.81 -5.19 -0.03 6.61 16 20 C -0.54 -14.82 9.39 -34.44 -0.32 -15.14 16 21 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 23 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 24 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.16 3.18 5.90 -52.49 -0.31 2.87 16 32 H 0.42 6.17 8.58 -40.82 -0.35 5.82 16 33 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.10 0.62 8.06 -51.93 -0.42 0.20 16 36 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.03 0.12 8.14 -51.93 -0.42 -0.30 16 38 H 0.07 0.35 8.12 -51.93 -0.42 -0.07 16 39 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 40 H 0.07 0.53 6.31 -51.93 -0.33 0.20 16 41 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 43 H 0.05 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.06 1.40 7.65 -51.93 -0.40 1.00 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -32.57 385.31 -8.46 -41.03 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.40 Total: 4.64 kcal Atomic # 6 Polarization: 0.71 SS G_CDS: -2.56 Total: -1.86 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.41 Total: -55.02 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.12 Total: -10.75 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.57 -8.46 -41.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362422804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.134 kcal (2) G-P(sol) polarization free energy of solvation -32.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds