Wall clock time and date at job start Tue Mar 31 2020 17:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39725 * 125.78014 * 2 1 4 4 C 1.36152 * 107.86081 * 180.12432 * 3 2 1 5 5 N 1.39360 * 126.26639 * 179.88538 * 4 3 2 6 6 C 1.34779 * 120.00079 * 359.68548 * 5 4 3 7 7 O 1.21714 * 119.99734 * 359.97438 * 6 5 4 8 8 C 1.46615 * 119.99927 * 180.02562 * 6 5 4 9 9 C 1.36575 * 125.98600 * 179.97438 * 8 6 5 10 10 C 1.40355 * 106.70418 * 179.73799 * 9 8 6 11 11 C 1.35131 * 107.12050 * 359.97438 * 10 9 8 12 12 C 1.50698 * 125.61664 * 180.02562 * 11 10 9 13 13 N 1.46907 * 109.47285 * 90.00248 * 12 11 10 14 14 C 1.46899 * 111.00112 * 170.00163 * 13 12 11 15 15 C 1.46896 * 110.99930 * 293.95663 * 13 12 11 16 16 O 1.33940 * 108.77096 * 0.02562 * 11 10 9 17 17 N 1.35815 * 107.47112 * 359.61891 * 4 3 2 18 18 C 1.46494 * 126.09473 * 180.24353 * 17 4 3 19 19 C 1.50707 * 109.47294 * 89.99989 * 18 17 4 20 20 H 1.07994 * 119.99966 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99759 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99632 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00522 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47184 * 89.99872 * 23 21 19 25 25 H 1.48501 * 109.47372 * 210.00426 * 23 21 19 26 26 H 1.48506 * 109.46869 * 330.00190 * 23 21 19 27 27 N 1.30840 * 125.77679 * 179.69045 * 2 1 3 28 28 H 1.09002 * 109.46918 * 270.28970 * 1 2 3 29 29 H 1.08998 * 109.46986 * 30.28528 * 1 2 3 30 30 H 1.08995 * 109.47380 * 150.28808 * 1 2 3 31 31 H 1.07999 * 126.07088 * 359.97438 * 3 2 1 32 32 H 0.97007 * 120.00271 * 179.68813 * 5 4 3 33 33 H 1.08000 * 126.64365 * 359.71397 * 9 8 6 34 34 H 1.08000 * 126.43908 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.47227 * 210.00406 * 12 11 10 36 36 H 1.09001 * 109.47494 * 330.00038 * 12 11 10 37 37 H 1.08997 * 109.47092 * 59.99592 * 14 13 12 38 38 H 1.08994 * 109.46707 * 180.02562 * 14 13 12 39 39 H 1.09003 * 109.46843 * 299.99918 * 14 13 12 40 40 H 1.09003 * 109.47381 * 59.99440 * 15 13 12 41 41 H 1.08998 * 109.47232 * 179.97438 * 15 13 12 42 42 H 1.08999 * 109.46996 * 299.99621 * 15 13 12 43 43 H 1.09000 * 109.47374 * 210.00072 * 18 17 4 44 44 H 1.09005 * 109.47200 * 330.00074 * 18 17 4 45 45 H 0.96992 * 119.99724 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1335 0.0000 4 6 3.6194 0.7146 -0.0028 5 7 4.7495 1.5301 -0.0060 6 6 4.6130 2.8710 -0.0129 7 8 3.5026 3.3696 -0.0169 8 6 5.8019 3.7289 -0.0169 9 6 5.8060 5.0946 -0.0244 10 6 7.1516 5.4940 -0.0196 11 6 7.9004 4.3692 -0.0089 12 6 9.4064 4.3175 0.0000 13 7 9.8879 4.3086 1.3879 14 6 11.3275 4.0212 1.4439 15 6 9.5777 5.5769 2.0610 16 8 7.0836 3.3076 -0.0075 17 7 3.6088 -0.6435 0.0041 18 6 4.7858 -1.5157 0.0091 19 6 5.1888 -1.8076 1.4316 20 1 4.6249 -1.3852 2.2501 21 6 6.2781 -2.6130 1.6880 22 7 6.6295 -2.8681 2.9295 23 14 7.2539 -3.3429 0.2724 24 1 8.3458 -2.4112 -0.1085 25 1 7.8363 -4.6433 0.6911 26 1 6.3555 -3.5546 -0.8909 27 7 2.2719 -1.0615 0.0057 28 1 -0.3633 0.0052 1.0277 29 1 -0.3633 0.8874 -0.5183 30 1 -0.3634 -0.8925 -0.5093 31 1 1.9875 2.1598 -0.0004 32 1 5.6344 1.1327 -0.0033 33 1 4.9415 5.7417 -0.0328 34 1 7.5193 6.5094 -0.0228 35 1 9.7420 3.4128 -0.5068 36 1 9.8031 5.1916 -0.5165 37 1 11.8723 4.7856 0.8898 38 1 11.6575 4.0202 2.4827 39 1 11.5204 3.0443 1.0007 40 1 8.4986 5.7310 2.0663 41 1 9.9446 5.5432 3.0868 42 1 10.0592 6.3976 1.5293 43 1 4.5481 -2.4497 -0.5001 44 1 5.6079 -1.0196 -0.5069 45 1 7.3955 -3.4350 3.1099 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411666113.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:47 Heat of formation + Delta-G solvation = 75.318014 kcal Electronic energy + Delta-G solvation = -28178.938973 eV Core-core repulsion = 24200.781413 eV Total energy + Delta-G solvation = -3978.157559 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.88198 -40.86294 -39.07752 -37.73212 -34.92388 -33.80428 -33.19917 -32.14741 -31.29827 -29.54472 -28.64397 -27.92068 -27.03722 -26.29192 -23.72850 -22.52849 -22.12093 -21.62672 -20.67819 -19.83920 -19.55255 -17.80974 -17.17068 -16.75432 -16.64258 -16.19307 -15.61886 -15.54120 -15.22301 -14.92257 -14.47557 -14.21621 -14.04047 -13.81143 -13.41337 -13.19139 -13.11453 -13.07259 -12.71201 -12.68980 -12.60250 -12.34088 -12.13114 -11.99536 -11.88510 -11.85083 -11.77488 -11.14409 -10.82281 -10.55156 -10.26845 -10.21009 -10.16684 -9.75866 -9.67221 -8.92134 -8.82760 -8.63794 -7.96005 -7.52459 -6.30016 -4.34381 0.85698 2.04270 2.35977 2.55651 2.80377 3.10219 3.19280 3.19919 3.22039 3.58107 3.64491 3.68792 4.17417 4.28841 4.60497 4.71659 4.80227 4.86855 4.95708 4.98506 5.05114 5.23814 5.28583 5.28814 5.44899 5.54262 5.58955 5.61596 5.64928 5.68673 6.02300 6.03156 6.07696 6.15111 6.19349 6.26731 6.35740 6.52673 6.55482 6.60301 6.73098 6.82666 7.22602 7.40716 7.48460 7.70107 8.08004 8.27926 8.54299 8.76036 9.24469 10.82316 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008462 B = 0.004182 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3308.003947 B = 6693.178856 C = 9453.216719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.287 4.287 4 C 0.302 3.698 5 N -0.629 5.629 6 C 0.611 3.389 7 O -0.495 6.495 8 C -0.068 4.068 9 C -0.113 4.113 10 C -0.217 4.217 11 C 0.035 3.965 12 C 0.126 3.874 13 N -0.544 5.544 14 C 0.026 3.974 15 C 0.017 3.983 16 O -0.149 6.149 17 N -0.343 5.343 18 C 0.230 3.770 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.081 3.919 22 N -0.882 5.882 23 Si 0.870 3.130 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.278 5.278 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.164 0.836 32 H 0.420 0.580 33 H 0.163 0.837 34 H 0.155 0.845 35 H 0.098 0.902 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.028 0.972 43 H 0.056 0.944 44 H 0.035 0.965 45 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.192 18.074 -7.331 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.111 4.111 3 C -0.319 4.319 4 C 0.081 3.919 5 N -0.274 5.274 6 C 0.398 3.602 7 O -0.370 6.370 8 C -0.120 4.120 9 C -0.134 4.134 10 C -0.237 4.237 11 C -0.019 4.019 12 C -0.001 4.001 13 N -0.268 5.268 14 C -0.122 4.122 15 C -0.131 4.131 16 O -0.044 6.044 17 N -0.129 5.129 18 C 0.111 3.889 19 C -0.584 4.584 20 H 0.100 0.900 21 C -0.123 4.123 22 N -0.519 5.519 23 Si 0.696 3.304 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.188 1.188 27 N -0.103 5.103 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.258 0.742 33 H 0.181 0.819 34 H 0.173 0.827 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.046 0.954 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.591 16.270 -6.949 18.555 hybrid contribution 1.737 0.904 -0.803 2.117 sum 7.328 17.175 -7.753 20.218 Atomic orbital electron populations 1.20041 0.87304 1.02426 1.02381 1.22043 0.96642 0.90851 1.01525 1.21275 0.88880 1.00588 1.21138 1.17944 0.87773 0.83121 1.03112 1.42557 1.08788 1.05242 1.70840 1.16309 0.86379 0.80403 0.77149 1.90818 1.23304 1.73770 1.49119 1.21767 0.82004 0.94009 1.14268 1.21883 0.98243 0.92869 1.00406 1.21552 0.92546 0.99298 1.10283 1.22512 0.92882 0.84519 1.01944 1.20594 0.85253 1.03601 0.90634 1.61862 1.16368 1.34244 1.14354 1.22411 0.85982 1.01122 1.02691 1.22532 1.02583 0.88735 0.99231 1.84075 1.15230 1.35240 1.69865 1.49064 1.06199 1.01794 1.55800 1.19960 0.79220 0.89985 0.99779 1.21184 1.14356 1.32622 0.90244 0.90015 1.24807 0.96546 0.95220 0.95770 1.69872 1.26811 1.36662 1.18506 0.86938 0.80879 0.79720 0.82857 1.19597 1.20329 1.18752 1.77352 0.85745 1.21753 1.25429 0.91091 0.91011 0.91460 0.81857 0.74243 0.81940 0.82744 0.88324 0.90995 0.95369 0.90708 0.90787 0.90666 0.90928 0.95370 0.92632 0.94752 0.92044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.10 7.20 -82.46 -0.59 0.50 16 3 C -0.29 -5.90 9.58 -39.78 -0.38 -6.28 16 4 C 0.30 6.50 7.68 -152.76 -1.17 5.33 16 5 N -0.63 -11.84 5.41 -12.55 -0.07 -11.91 16 6 C 0.61 10.60 7.75 -12.88 -0.10 10.50 16 7 O -0.49 -9.25 13.99 5.18 0.07 -9.18 16 8 C -0.07 -1.00 7.13 -36.80 -0.26 -1.26 16 9 C -0.11 -1.37 10.62 -39.39 -0.42 -1.79 16 10 C -0.22 -2.19 9.36 -39.89 -0.37 -2.56 16 11 C 0.04 0.40 6.21 -35.41 -0.22 0.18 16 12 C 0.13 1.12 5.49 -4.97 -0.03 1.09 16 13 N -0.54 -5.30 5.01 -252.72 -1.27 -6.57 16 14 C 0.03 0.19 9.57 60.06 0.57 0.77 16 15 C 0.02 0.14 9.27 60.06 0.56 0.70 16 16 O -0.15 -2.14 10.40 4.98 0.05 -2.09 16 17 N -0.34 -8.08 3.62 -61.45 -0.22 -8.30 16 18 C 0.23 5.54 5.09 -5.19 -0.03 5.51 16 19 C -0.55 -15.31 9.94 -34.44 -0.34 -15.65 16 20 H 0.08 2.61 8.06 -52.49 -0.42 2.19 16 21 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.88 -26.15 13.96 55.43 0.77 -25.38 16 23 Si 0.87 19.97 27.47 -169.99 -4.67 15.30 16 24 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 27 N -0.28 -6.45 12.56 33.64 0.42 -6.03 16 28 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 31 H 0.16 3.21 5.82 -52.49 -0.31 2.90 16 32 H 0.42 7.57 7.75 -40.82 -0.32 7.25 16 33 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 34 H 0.15 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.10 0.83 8.06 -51.93 -0.42 0.42 16 36 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 38 H 0.07 0.54 8.12 -51.93 -0.42 0.11 16 39 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 40 H 0.07 0.68 6.31 -51.93 -0.33 0.35 16 41 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 42 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.06 1.35 7.20 -51.93 -0.37 0.98 16 44 H 0.03 0.76 6.95 -51.93 -0.36 0.40 16 45 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -33.73 381.74 -8.00 -41.73 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -6.34 Total: 8.01 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -2.51 Total: -1.34 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.36 Total: -58.18 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: 0.12 Total: -11.27 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.73 -8.00 -41.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411666113.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.044 kcal (2) G-P(sol) polarization free energy of solvation -33.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds