Wall clock time and date at job start Tue Mar 31 2020 16:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38404 * 120.85396 * 2 1 4 4 C 1.38311 * 119.30009 * 180.30013 * 3 2 1 5 5 N 1.31958 * 121.08227 * 359.67856 * 4 3 2 6 6 C 1.31660 * 121.87795 * 0.02562 * 5 4 3 7 7 C 1.39564 * 120.57056 * 0.02562 * 6 5 4 8 8 C 1.47834 * 120.56089 * 179.97438 * 7 6 5 9 9 O 1.21555 * 120.00003 * 174.03685 * 8 7 6 10 10 N 1.34782 * 120.00329 * 354.04138 * 8 7 6 11 11 C 1.46501 * 119.99945 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.64197 * 323.29726 * 11 10 8 13 13 C 1.54589 * 110.72419 * 86.45272 * 11 10 8 14 14 C 1.54000 * 105.13755 * 140.31647 * 13 11 10 15 15 N 1.47899 * 107.05875 * 1.22007 * 14 13 11 16 16 C 1.46900 * 111.00094 * 214.15608 * 15 14 13 17 17 C 1.50694 * 109.46983 * 175.94009 * 16 15 14 18 18 O 1.21294 * 120.00370 * 7.63006 * 17 16 15 19 19 N 1.34777 * 120.00026 * 187.35857 * 17 16 15 20 20 C 1.37099 * 120.00281 * 180.27422 * 19 17 16 21 21 H 1.08004 * 120.00066 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00319 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99648 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00433 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46863 * 60.00240 * 24 22 20 26 26 H 1.48496 * 109.47509 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47213 * 300.00584 * 24 22 20 28 28 C 1.48533 * 105.82029 * 334.67260 * 15 14 13 29 29 H 1.08999 * 109.46481 * 262.52021 * 1 2 3 30 30 H 1.08996 * 109.47181 * 22.51347 * 1 2 3 31 31 H 1.08994 * 109.46890 * 142.52096 * 1 2 3 32 32 H 1.07999 * 120.34819 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.45802 * 179.70005 * 4 3 2 34 34 H 1.08006 * 119.71372 * 180.02562 * 6 5 4 35 35 H 0.96995 * 119.99711 * 359.97438 * 10 8 7 36 36 H 1.08993 * 110.31183 * 21.39706 * 13 11 10 37 37 H 1.09003 * 110.30684 * 259.22679 * 13 11 10 38 38 H 1.08999 * 109.91088 * 241.86837 * 14 13 11 39 39 H 1.09003 * 109.91654 * 120.57704 * 14 13 11 40 40 H 1.09007 * 109.46796 * 55.94206 * 16 15 14 41 41 H 1.08996 * 109.47388 * 295.94391 * 16 15 14 42 42 H 0.97003 * 119.99933 * 0.28015 * 19 17 16 43 43 H 0.97001 * 120.00144 * 180.02562 * 23 22 20 44 44 H 1.08998 * 110.66745 * 157.63624 * 28 15 14 45 45 H 1.08995 * 110.66786 * 280.77204 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2169 1.1882 0.0000 4 6 3.5995 1.1507 -0.0063 5 7 4.2499 0.0025 -0.0060 6 6 3.6198 -1.1535 -0.0002 7 6 2.2250 -1.2017 0.0054 8 6 1.5177 -2.4998 0.0113 9 8 0.3079 -2.5323 0.1254 10 7 2.2142 -3.6474 -0.1097 11 6 1.5131 -4.9338 -0.1044 12 1 0.6730 -4.9107 0.5897 13 6 1.0367 -5.3030 -1.5279 14 6 1.2823 -6.8181 -1.6538 15 7 1.8362 -7.2767 -0.3614 16 6 2.8052 -8.3629 -0.5597 17 6 3.4202 -8.7352 0.7647 18 8 2.9887 -8.2534 1.7908 19 7 4.4464 -9.6078 0.8096 20 6 5.0024 -9.9509 2.0149 21 1 4.6178 -9.5222 2.9286 22 6 6.0600 -10.8509 2.0613 23 7 6.5276 -11.3729 0.9496 24 14 6.8179 -11.3177 3.7034 25 1 5.7819 -11.9369 4.5686 26 1 7.9209 -12.2870 3.4819 27 1 7.3531 -10.1009 4.3655 28 6 2.4868 -6.0872 0.2453 29 1 -0.3632 -0.1338 1.0189 30 1 -0.3633 0.9493 -0.3935 31 1 -0.3633 -0.8155 -0.6253 32 1 1.6966 2.1346 0.0004 33 1 4.1559 2.0763 -0.0113 34 1 4.1872 -2.0725 0.0003 35 1 3.1795 -3.6214 -0.2011 36 1 1.6188 -4.7621 -2.2739 37 1 -0.0245 -5.0812 -1.6411 38 1 1.9963 -7.0132 -2.4540 39 1 0.3424 -7.3310 -1.8580 40 1 3.5871 -8.0320 -1.2433 41 1 2.2974 -9.2304 -0.9811 42 1 4.7917 -9.9931 -0.0110 43 1 7.2657 -12.0015 0.9819 44 1 2.5720 -6.2044 1.3256 45 1 3.4653 -5.9137 -0.2024 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479948161.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:08 Heat of formation + Delta-G solvation = -22.597872 kcal Electronic energy + Delta-G solvation = -27703.311825 eV Core-core repulsion = 23720.908315 eV Total energy + Delta-G solvation = -3982.403511 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.08104 -39.70944 -38.74449 -37.46829 -34.87626 -34.00031 -33.85092 -32.17352 -31.30095 -30.68337 -28.68507 -27.94783 -26.55623 -24.80550 -24.16573 -22.70481 -21.44785 -21.24362 -20.35781 -19.21618 -18.12208 -17.87988 -17.10291 -16.63665 -16.35860 -15.95900 -15.48515 -15.34464 -15.16363 -14.61151 -14.49272 -14.24297 -14.05153 -13.87227 -13.53153 -13.28484 -13.13198 -13.03157 -12.88727 -12.74540 -12.38747 -12.27429 -11.93226 -11.74624 -11.53839 -11.35166 -11.19890 -10.90129 -10.67737 -10.45990 -10.33458 -10.24065 -9.91440 -9.64394 -9.61775 -9.50865 -9.18735 -8.47173 -8.08707 -7.96934 -6.44540 -3.85515 0.29378 0.81149 2.60510 2.83883 3.18210 3.24432 3.28647 3.47666 3.86253 3.91151 4.03948 4.23928 4.29832 4.31739 4.44527 4.56438 4.68827 4.76210 4.99291 5.00121 5.11919 5.14337 5.22182 5.23495 5.35170 5.38605 5.43932 5.46701 5.63175 5.76232 5.77394 5.84473 5.87541 5.94041 6.05201 6.08089 6.22227 6.23085 6.33581 6.42676 7.08013 7.15075 7.27466 7.48210 7.52407 7.96458 8.02703 8.58143 9.14904 9.50630 10.02103 10.73017 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015370 B = 0.002352 C = 0.002142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.329841 B =11901.099116 C =13067.006552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.019 3.981 3 C -0.186 4.186 4 C 0.123 3.877 5 N -0.492 5.492 6 C 0.140 3.860 7 C -0.193 4.193 8 C 0.565 3.435 9 O -0.528 6.528 10 N -0.715 5.715 11 C 0.141 3.859 12 H 0.106 0.894 13 C -0.139 4.139 14 C 0.034 3.966 15 N -0.490 5.490 16 C 0.038 3.962 17 C 0.440 3.560 18 O -0.579 6.579 19 N -0.562 5.562 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.036 3.964 29 H 0.083 0.917 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.093 0.907 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.114 0.886 45 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.462 21.509 -8.201 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.011 3.989 3 C -0.205 4.205 4 C -0.033 4.033 5 N -0.201 5.201 6 C -0.019 4.019 7 C -0.198 4.198 8 C 0.352 3.648 9 O -0.405 6.405 10 N -0.366 5.366 11 C 0.036 3.964 12 H 0.123 0.877 13 C -0.178 4.178 14 C -0.095 4.095 15 N -0.214 5.214 16 C -0.094 4.094 17 C 0.226 3.774 18 O -0.463 6.463 19 N -0.199 5.199 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.092 4.092 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.116 0.884 32 H 0.159 0.841 33 H 0.178 0.822 34 H 0.176 0.824 35 H 0.235 0.765 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.111 0.889 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.133 0.867 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.957 21.430 -7.121 23.943 hybrid contribution 1.063 -0.322 -0.419 1.188 sum -6.894 21.108 -7.541 23.451 Atomic orbital electron populations 1.21081 0.88988 1.03387 1.04339 1.20523 0.97625 0.91312 0.89467 1.22097 0.95575 0.98712 1.04161 1.23002 0.91794 0.96478 0.92004 1.67720 1.40828 0.98291 1.13252 1.23027 0.90419 0.96723 0.91681 1.20897 0.95225 0.94387 1.09325 1.17984 0.86983 0.83363 0.76515 1.90745 1.13451 1.87045 1.49275 1.45939 1.10825 1.05718 1.74099 1.22001 0.96079 0.81027 0.97301 0.87650 1.22798 1.02469 0.95609 0.96945 1.22927 1.00569 0.94479 0.91475 1.64493 1.31497 1.06183 1.19214 1.22104 0.94340 0.95808 0.97131 1.19701 0.83460 0.84328 0.89937 1.90495 1.63851 1.56843 1.35097 1.41865 1.29320 1.38884 1.09804 1.19647 1.13150 1.23450 0.86675 0.87934 1.25265 0.97104 0.96694 0.98832 1.69603 1.27048 1.30790 1.26827 0.85917 0.78494 0.78395 0.81427 1.19855 1.20971 1.19897 1.23543 0.94165 0.87820 1.03713 0.89817 0.91824 0.88372 0.84063 0.82198 0.82354 0.76525 0.91328 0.90443 0.93673 0.90059 0.93373 0.88871 0.77476 0.91785 0.86746 0.93928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 8.78 36.01 0.32 -0.74 16 2 C 0.02 0.18 5.95 -103.90 -0.62 -0.44 16 3 C -0.19 -1.36 9.78 -39.49 -0.39 -1.74 16 4 C 0.12 0.96 11.17 -17.47 -0.20 0.76 16 5 N -0.49 -4.97 10.35 -12.91 -0.13 -5.11 16 6 C 0.14 1.35 10.70 -17.13 -0.18 1.17 16 7 C -0.19 -2.00 5.89 -104.82 -0.62 -2.62 16 8 C 0.56 6.74 7.72 -12.33 -0.10 6.65 16 9 O -0.53 -7.57 13.27 5.32 0.07 -7.50 16 10 N -0.71 -7.83 5.10 -52.95 -0.27 -8.10 16 11 C 0.14 1.82 3.35 -66.07 -0.22 1.60 16 12 H 0.11 1.56 7.69 -51.93 -0.40 1.16 16 13 C -0.14 -1.60 6.67 -25.37 -0.17 -1.77 16 14 C 0.03 0.42 6.70 -2.75 -0.02 0.40 16 15 N -0.49 -7.91 5.11 -231.89 -1.19 -9.10 16 16 C 0.04 0.65 5.32 -4.98 -0.03 0.63 16 17 C 0.44 10.09 7.38 -10.99 -0.08 10.01 16 18 O -0.58 -15.12 13.89 5.55 0.08 -15.04 16 19 N -0.56 -13.93 5.29 -10.96 -0.06 -13.99 16 20 C -0.30 -8.21 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.21 13.05 55.50 0.72 -23.48 16 24 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 25 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 C 0.04 0.55 5.18 -1.90 -0.01 0.54 16 29 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.40 8.06 -51.93 -0.42 -0.02 16 31 H 0.10 1.03 6.07 -51.93 -0.32 0.71 16 32 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.16 1.20 6.47 -52.48 -0.34 0.86 16 35 H 0.40 3.54 6.63 -40.82 -0.27 3.27 16 36 H 0.07 0.72 8.05 -51.93 -0.42 0.30 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.51 7.67 -51.93 -0.40 0.11 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.75 7.98 -51.93 -0.41 0.33 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.39 9.30 7.90 -40.82 -0.32 8.98 16 43 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.11 2.15 6.44 -51.93 -0.33 1.82 16 45 H 0.04 0.62 7.89 -51.93 -0.41 0.21 16 LS Contribution 371.68 15.07 5.60 5.60 Total: -1.00 -32.82 371.68 -8.83 -41.65 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -6.09 Total: 12.63 kcal Atomic # 6 Polarization: 9.16 SS G_CDS: -2.55 Total: 6.61 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: -0.92 Total: -59.78 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: 0.15 Total: -22.54 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.82 -8.83 -41.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479948161.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.050 kcal (2) G-P(sol) polarization free energy of solvation -32.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds