Wall clock time and date at job start Tue Mar 31 2020 16:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 110.35219 * 2 1 4 4 C 1.34780 * 119.99893 * 60.68817 * 3 2 1 5 5 O 1.21544 * 120.00118 * 359.97438 * 4 3 2 6 6 C 1.47837 * 119.99623 * 180.02562 * 4 3 2 7 7 C 1.40023 * 120.56008 * 179.97438 * 6 4 3 8 8 C 1.38357 * 118.29389 * 179.97438 * 7 6 4 9 9 C 1.38351 * 119.30193 * 0.02562 * 8 7 6 10 10 N 1.31931 * 121.07712 * 0.02562 * 9 8 7 11 11 C 1.31698 * 121.87986 * 359.66459 * 10 9 8 12 12 C 1.54600 * 110.30622 * 122.14018 * 2 1 3 13 13 C 1.54937 * 103.07774 * 140.96510 * 12 2 1 14 14 N 1.48529 * 103.22900 * 322.49131 * 13 12 2 15 15 C 1.46898 * 110.99904 * 159.72264 * 14 13 12 16 16 C 1.50700 * 109.47222 * 69.87751 * 15 14 13 17 17 O 1.21293 * 119.99865 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99839 * 180.02562 * 16 15 14 19 19 C 1.37108 * 119.99765 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99485 * 359.97438 * 19 18 16 21 21 C 1.38945 * 119.99912 * 180.02562 * 19 18 16 22 22 N 1.31416 * 120.00394 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99927 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46976 * 89.99669 * 23 21 19 25 25 H 1.48499 * 109.47120 * 209.99672 * 23 21 19 26 26 H 1.48500 * 109.47065 * 329.99575 * 23 21 19 27 27 C 1.47908 * 105.81635 * 39.21288 * 14 13 12 28 28 H 1.08996 * 109.47411 * 299.31204 * 1 2 3 29 29 H 1.09005 * 109.47394 * 59.31510 * 1 2 3 30 30 H 1.09006 * 109.47075 * 179.31353 * 1 2 3 31 31 H 0.96993 * 120.00012 * 240.68474 * 3 2 1 32 32 H 1.08006 * 120.85098 * 359.97438 * 7 6 4 33 33 H 1.07995 * 120.34843 * 180.02562 * 8 7 6 34 34 H 1.08000 * 119.46156 * 180.02562 * 9 8 7 35 35 H 1.08003 * 119.71738 * 180.31112 * 11 10 9 36 36 H 1.09002 * 110.72660 * 22.51602 * 12 2 1 37 37 H 1.08997 * 110.71952 * 259.40804 * 12 2 1 38 38 H 1.08997 * 110.67172 * 80.93292 * 13 12 2 39 39 H 1.09005 * 110.66412 * 204.06206 * 13 12 2 40 40 H 1.09002 * 109.47151 * 189.87841 * 15 14 13 41 41 H 1.09002 * 109.47286 * 309.87755 * 15 14 13 42 42 H 0.96994 * 120.00731 * 359.97438 * 18 16 15 43 43 H 0.96998 * 120.00204 * 180.02562 * 22 21 19 44 44 H 1.09001 * 109.91763 * 94.01948 * 27 14 13 45 45 H 1.09000 * 109.91195 * 215.11434 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0395 1.3735 0.0000 4 6 1.7381 2.2041 1.0178 5 8 1.0432 1.8137 1.9354 6 6 2.2518 3.5903 1.0175 7 6 1.9456 4.4633 2.0685 8 6 2.4516 5.7502 2.0208 9 6 3.2359 6.1299 0.9462 10 7 3.5073 5.2859 -0.0308 11 6 3.0540 4.0493 -0.0277 12 6 2.0665 -0.7713 1.2277 13 6 3.2876 -1.5346 0.6560 14 7 2.8368 -1.9273 -0.7037 15 6 3.9829 -2.2306 -1.5711 16 6 4.6331 -3.5113 -1.1150 17 8 4.1854 -4.1126 -0.1614 18 7 5.7119 -3.9886 -1.7666 19 6 6.3031 -5.1541 -1.3519 20 1 5.9044 -5.6894 -0.5028 21 6 7.4157 -5.6459 -2.0234 22 7 7.9010 -4.9943 -3.0563 23 14 8.2215 -7.2335 -1.4580 24 1 7.5978 -8.3831 -2.1614 25 1 9.6727 -7.1904 -1.7701 26 1 8.0347 -7.3890 0.0070 27 6 2.0698 -0.7741 -1.2228 28 1 -0.3634 0.5031 0.8960 29 1 -0.3634 0.5244 -0.8838 30 1 -0.3633 -1.0276 -0.0123 31 1 2.5938 1.6852 -0.7324 32 1 1.3302 4.1404 2.8953 33 1 2.2365 6.4508 2.8140 34 1 3.6326 7.1336 0.9065 35 1 3.3019 3.3862 -0.8433 36 1 1.3172 -1.4683 1.6031 37 1 2.3761 -0.0806 2.0120 38 1 4.1578 -0.8808 0.5990 39 1 3.5064 -2.4165 1.2583 40 1 3.6403 -2.3433 -2.5997 41 1 4.7057 -1.4166 -1.5161 42 1 6.0697 -3.5081 -2.5294 43 1 8.6775 -5.3379 -3.5252 44 1 2.7221 -0.1289 -1.8114 45 1 1.2419 -1.1257 -1.8384 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484024943.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:29 Heat of formation + Delta-G solvation = -18.131702 kcal Electronic energy + Delta-G solvation = -27982.389247 eV Core-core repulsion = 24000.179404 eV Total energy + Delta-G solvation = -3982.209843 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14674 -40.03477 -38.67059 -37.54726 -34.77934 -33.82675 -33.00442 -32.54586 -31.28029 -30.81040 -29.59288 -27.55706 -25.58045 -24.90193 -24.01873 -23.76657 -21.87043 -20.99174 -19.79878 -19.16761 -18.46832 -17.87922 -17.15677 -16.84689 -16.21704 -15.85624 -15.48158 -15.36170 -14.93724 -14.69704 -14.47870 -14.28370 -14.04420 -13.87392 -13.59865 -13.47188 -13.36019 -13.13979 -12.64965 -12.57693 -12.38249 -12.11871 -11.78962 -11.49706 -11.32560 -11.24695 -11.02621 -10.91982 -10.77034 -10.39247 -10.37844 -10.34738 -10.21448 -9.77956 -9.70364 -9.49169 -9.28113 -8.49869 -8.02774 -7.93958 -6.41332 -3.82032 0.20190 0.74271 2.53286 2.75039 3.18223 3.26782 3.32634 3.43391 3.80903 3.90682 4.02992 4.23039 4.30083 4.30853 4.37785 4.46969 4.57230 4.70852 4.84187 4.92721 5.10413 5.11651 5.23620 5.29805 5.42187 5.46509 5.54898 5.57485 5.63551 5.68665 5.77350 5.80883 5.90155 5.98280 6.06690 6.17343 6.18438 6.27514 6.38977 6.45668 7.10037 7.13431 7.23117 7.37651 7.55718 7.88802 8.06708 8.62328 9.18826 9.54881 10.06876 10.76532 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017910 B = 0.002304 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.965461 B =12149.140192 C =12989.617250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.164 3.836 3 N -0.714 5.714 4 C 0.565 3.435 5 O -0.526 6.526 6 C -0.186 4.186 7 C -0.017 4.017 8 C -0.180 4.180 9 C 0.120 3.880 10 N -0.487 5.487 11 C 0.134 3.866 12 C -0.121 4.121 13 C 0.040 3.960 14 N -0.487 5.487 15 C 0.036 3.964 16 C 0.445 3.555 17 O -0.576 6.576 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.035 3.965 28 H 0.075 0.925 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.397 0.603 32 H 0.148 0.852 33 H 0.143 0.857 34 H 0.162 0.838 35 H 0.158 0.842 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.036 0.964 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.391 0.609 43 H 0.271 0.729 44 H 0.047 0.953 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.377 22.432 4.305 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.079 3.921 3 N -0.366 5.366 4 C 0.351 3.649 5 O -0.403 6.403 6 C -0.191 4.191 7 C -0.043 4.043 8 C -0.199 4.199 9 C -0.037 4.037 10 N -0.195 5.195 11 C -0.024 4.024 12 C -0.160 4.160 13 C -0.088 4.088 14 N -0.211 5.211 15 C -0.096 4.096 16 C 0.230 3.770 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.427 4.427 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.094 4.094 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.233 0.767 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.179 0.821 35 H 0.175 0.825 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.120 0.880 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -11.806 21.468 4.790 24.964 hybrid contribution 1.128 0.193 -0.169 1.157 sum -10.678 21.661 4.621 24.588 Atomic orbital electron populations 1.22141 0.93016 1.03097 1.02870 1.21311 0.94666 0.79767 0.96384 1.46200 1.53499 1.12682 1.24255 1.17971 0.80230 0.84376 0.82307 1.90767 1.37606 1.76576 1.35313 1.21083 1.03576 0.95893 0.98596 1.21772 0.94114 0.92032 0.96427 1.22205 0.99989 0.97066 1.00674 1.23050 0.92719 0.99162 0.88736 1.67724 1.21580 1.03373 1.26838 1.23003 0.91090 0.92437 0.95892 1.22871 0.98255 0.98458 0.96391 1.23336 0.95159 0.99632 0.90646 1.64559 1.20909 1.33538 1.02104 1.22088 0.92235 0.97458 0.97786 1.19664 0.83241 0.87564 0.86491 1.90511 1.64860 1.60901 1.29688 1.41856 1.25778 1.23157 1.29465 1.19694 1.09323 0.99606 1.14069 0.87926 1.25254 0.97133 0.99625 0.95981 1.69611 1.24793 1.39847 1.20200 0.85864 0.77972 0.81296 0.79199 1.20390 1.20963 1.19437 1.23306 0.98911 0.91817 0.95351 0.90565 0.92734 0.90845 0.76694 0.83402 0.83894 0.82119 0.82513 0.89665 0.90430 0.94543 0.87954 0.89253 0.93319 0.77545 0.91905 0.93479 0.88912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.17 37.16 0.30 -1.34 16 2 C 0.16 1.86 0.96 -130.21 -0.12 1.74 16 3 N -0.71 -6.85 5.11 -47.06 -0.24 -7.09 16 4 C 0.57 6.13 6.98 -12.33 -0.09 6.04 16 5 O -0.53 -7.17 13.29 5.33 0.07 -7.10 16 6 C -0.19 -1.70 5.89 -104.82 -0.62 -2.32 16 7 C -0.02 -0.14 9.72 -38.87 -0.38 -0.51 16 8 C -0.18 -1.09 10.10 -39.50 -0.40 -1.49 16 9 C 0.12 0.81 11.17 -17.47 -0.20 0.61 16 10 N -0.49 -4.38 10.35 -12.91 -0.13 -4.51 16 11 C 0.13 1.12 10.71 -17.13 -0.18 0.94 16 12 C -0.12 -1.65 5.80 -24.87 -0.14 -1.80 16 13 C 0.04 0.64 5.86 -1.90 -0.01 0.63 16 14 N -0.49 -7.87 4.96 -231.58 -1.15 -9.02 16 15 C 0.04 0.63 5.18 -4.98 -0.03 0.60 16 16 C 0.45 10.43 7.58 -10.99 -0.08 10.35 16 17 O -0.58 -15.49 14.42 5.55 0.08 -15.41 16 18 N -0.57 -14.26 5.29 -10.96 -0.06 -14.31 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.53 13.05 55.50 0.72 -23.80 16 23 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.03 0.41 6.15 -2.50 -0.02 0.40 16 28 H 0.08 0.92 6.31 -51.93 -0.33 0.60 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.40 2.88 6.17 -40.82 -0.25 2.63 16 32 H 0.15 1.12 7.74 -52.48 -0.41 0.72 16 33 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 34 H 0.16 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.16 0.96 6.42 -52.48 -0.34 0.62 16 36 H 0.08 1.20 7.86 -51.93 -0.41 0.79 16 37 H 0.08 1.10 6.56 -51.93 -0.34 0.76 16 38 H 0.04 0.57 7.85 -51.93 -0.41 0.16 16 39 H 0.10 1.98 6.92 -51.93 -0.36 1.62 16 40 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 41 H 0.05 0.76 7.90 -51.93 -0.41 0.35 16 42 H 0.39 9.41 7.90 -40.82 -0.32 9.09 16 43 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 44 H 0.05 0.47 7.11 -51.93 -0.37 0.10 16 45 H 0.09 1.02 7.71 -51.93 -0.40 0.62 16 LS Contribution 369.21 15.07 5.56 5.56 Total: -1.00 -33.88 369.21 -8.33 -42.20 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -5.96 Total: 11.50 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: -2.20 Total: 5.91 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.86 Total: -58.74 kcal Atomic # 8 Polarization: -22.66 SS G_CDS: 0.15 Total: -22.51 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.88 -8.33 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484024943.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.071 kcal (2) G-P(sol) polarization free energy of solvation -33.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds