Wall clock time and date at job start Tue Mar 31 2020 16:31:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38498 * 120.81770 * 2 1 4 4 C 1.39264 * 119.18834 * 180.20533 * 3 2 1 5 5 C 1.48336 * 119.56673 * 179.79788 * 4 3 2 6 6 O 1.21486 * 120.00423 * 359.72578 * 5 4 3 7 7 N 1.34778 * 119.99648 * 179.72321 * 5 4 3 8 8 C 1.47420 * 125.65060 * 4.72161 * 7 5 4 9 9 C 1.54912 * 104.83603 * 155.90441 * 8 7 5 10 10 C 1.55157 * 101.58118 * 37.00907 * 9 8 7 11 11 C 1.47024 * 125.64909 * 184.75769 * 7 5 4 12 12 H 1.08998 * 109.88009 * 300.60161 * 11 7 5 13 13 C 1.53000 * 109.87974 * 61.60601 * 11 7 5 14 14 N 1.46504 * 109.47022 * 183.38375 * 13 11 7 15 15 C 1.36936 * 119.99819 * 175.08021 * 14 13 11 16 16 H 1.07996 * 120.00144 * 0.02562 * 15 14 13 17 17 C 1.38816 * 119.99656 * 179.97438 * 15 14 13 18 18 N 1.31617 * 120.00181 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99628 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47117 * 270.00182 * 19 17 15 21 21 H 1.48502 * 109.47083 * 30.00355 * 19 17 15 22 22 H 1.48497 * 109.46647 * 150.00222 * 19 17 15 23 23 N 1.32747 * 120.85868 * 359.51491 * 4 3 2 24 24 C 1.31378 * 121.80183 * 0.25787 * 23 4 3 25 25 C 1.39765 * 120.72017 * 359.97438 * 24 23 4 26 26 C 1.48009 * 120.46503 * 180.02562 * 25 24 23 27 27 N 1.34775 * 120.00116 * 355.37556 * 26 25 24 28 28 O 1.21528 * 119.99940 * 175.37870 * 26 25 24 29 29 H 1.09003 * 109.46841 * 263.21527 * 1 2 3 30 30 H 1.08991 * 109.47514 * 23.21638 * 1 2 3 31 31 H 1.08998 * 109.47051 * 143.22465 * 1 2 3 32 32 H 1.07996 * 120.40531 * 359.97438 * 3 2 1 33 33 H 1.09003 * 110.36862 * 274.74104 * 8 7 5 34 34 H 1.08998 * 110.37158 * 36.95371 * 8 7 5 35 35 H 1.09001 * 111.00308 * 155.08046 * 9 8 7 36 36 H 1.08994 * 111.00574 * 278.93780 * 9 8 7 37 37 H 1.08990 * 110.72222 * 206.13966 * 10 9 8 38 38 H 1.08998 * 110.72304 * 82.86203 * 10 9 8 39 39 H 1.09003 * 109.46825 * 63.38921 * 13 11 7 40 40 H 1.08997 * 109.47650 * 303.38396 * 13 11 7 41 41 H 0.97000 * 120.00015 * 355.07667 * 14 13 11 42 42 H 0.97000 * 120.00078 * 359.97438 * 18 17 15 43 43 H 1.08001 * 119.64222 * 179.97438 * 24 23 4 44 44 H 0.97002 * 119.99624 * 0.02562 * 27 26 25 45 45 H 0.97001 * 119.99930 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1894 0.0000 4 6 3.6086 1.1498 -0.0044 5 6 4.3769 2.4187 -0.0089 6 8 3.7916 3.4833 -0.0139 7 7 5.7244 2.3905 -0.0075 8 6 6.5585 1.1785 -0.1003 9 6 7.9117 1.6711 -0.6713 10 6 8.0599 3.0500 0.0244 11 6 6.6059 3.5633 0.0875 12 1 6.4129 4.2404 -0.7446 13 6 6.3668 4.2877 1.4137 14 7 7.1903 5.4984 1.4642 15 6 7.0690 6.3655 2.5171 16 1 6.3667 6.1567 3.3104 17 6 7.8496 7.5124 2.5651 18 7 8.7059 7.7666 1.5984 19 14 7.6836 8.6956 4.0011 20 1 6.6483 9.7129 3.6871 21 1 7.2859 7.9439 5.2184 22 1 8.9847 9.3706 4.2391 23 7 4.2568 -0.0086 0.0012 24 6 3.6205 -1.1580 0.0059 25 6 2.2235 -1.2007 0.0057 26 6 1.5125 -2.4988 0.0116 27 7 2.2091 -3.6492 -0.0769 28 8 0.3005 -2.5274 0.0963 29 1 -0.3633 -0.1214 1.0205 30 1 -0.3634 0.9443 -0.4051 31 1 -0.3633 -0.8231 -0.6152 32 1 1.6966 2.1360 -0.0004 33 1 6.7008 0.7394 0.8872 34 1 6.1016 0.4541 -0.7744 35 1 8.7229 1.0008 -0.3869 36 1 7.8611 1.7833 -1.7542 37 1 8.6793 3.7188 -0.5731 38 1 8.4718 2.9340 1.0269 39 1 6.6363 3.6304 2.2405 40 1 5.3146 4.5604 1.4944 41 1 7.8214 5.6858 0.7518 42 1 8.7918 7.1524 0.8526 43 1 4.1831 -2.0799 0.0099 44 1 3.1765 -3.6264 -0.1442 45 1 1.7431 -4.4999 -0.0727 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666458701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:14 Heat of formation + Delta-G solvation = -10.240169 kcal Electronic energy + Delta-G solvation = -28200.216688 eV Core-core repulsion = 24218.349048 eV Total energy + Delta-G solvation = -3981.867641 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39010 -40.09995 -39.00386 -37.42086 -34.89196 -34.70362 -34.09697 -32.07928 -31.35332 -31.24780 -28.53743 -28.32205 -25.84487 -24.75154 -23.52413 -22.83373 -22.24280 -21.60988 -20.74417 -19.25905 -18.46961 -17.97461 -17.27135 -16.91580 -16.68944 -16.25426 -15.63415 -15.57237 -15.40092 -14.73917 -14.67160 -14.26787 -13.83733 -13.72249 -13.57531 -13.44571 -13.26236 -13.08068 -12.99095 -12.90329 -12.66072 -12.54426 -12.16578 -11.68563 -11.20755 -10.76065 -10.61162 -10.55390 -10.51905 -10.46270 -10.30358 -10.19195 -9.97649 -9.94106 -9.68088 -9.60867 -9.17308 -8.82041 -8.47932 -6.94919 -6.05436 -3.04362 -0.12721 0.72691 2.09112 2.76781 2.83395 2.89743 3.52168 3.55940 3.61346 3.63920 3.74882 4.11728 4.21112 4.25451 4.51033 4.65020 4.68902 4.74562 4.87695 5.04008 5.07700 5.27296 5.31790 5.39471 5.41983 5.50463 5.65233 5.66324 5.74334 5.83714 5.88898 5.91228 5.97631 6.05427 6.07658 6.11492 6.22624 6.35678 6.45876 6.70850 6.76001 6.89485 7.20081 7.55705 7.66160 7.87364 8.12023 8.80936 9.27866 10.13966 10.28984 11.43444 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.019346 B = 0.002526 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.011703 B =11082.065988 C =12012.109556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.018 3.982 3 C -0.122 4.122 4 C 0.121 3.879 5 C 0.574 3.426 6 O -0.517 6.517 7 N -0.589 5.589 8 C 0.110 3.890 9 C -0.139 4.139 10 C -0.122 4.122 11 C 0.127 3.873 12 H 0.078 0.922 13 C 0.153 3.847 14 N -0.739 5.739 15 C -0.326 4.326 16 H 0.064 0.936 17 C -0.047 4.047 18 N -0.946 5.946 19 Si 1.084 2.916 20 H -0.295 1.295 21 H -0.295 1.295 22 H -0.288 1.288 23 N -0.461 5.461 24 C 0.136 3.864 25 C -0.188 4.188 26 C 0.570 3.430 27 N -0.849 5.849 28 O -0.529 6.529 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.099 0.901 32 H 0.158 0.842 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.017 0.983 40 H 0.036 0.964 41 H 0.367 0.633 42 H 0.254 0.746 43 H 0.164 0.836 44 H 0.402 0.598 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.788 -26.847 -7.026 29.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.010 3.990 3 C -0.143 4.143 4 C -0.016 4.016 5 C 0.360 3.640 6 O -0.393 6.393 7 N -0.321 5.321 8 C -0.013 4.013 9 C -0.177 4.177 10 C -0.160 4.160 11 C 0.025 3.975 12 H 0.096 0.904 13 C 0.024 3.976 14 N -0.385 5.385 15 C -0.457 4.457 16 H 0.082 0.918 17 C -0.244 4.244 18 N -0.592 5.592 19 Si 0.915 3.085 20 H -0.223 1.223 21 H -0.222 1.222 22 H -0.214 1.214 23 N -0.173 5.173 24 C -0.026 4.026 25 C -0.193 4.193 26 C 0.356 3.644 27 N -0.413 5.413 28 O -0.406 6.406 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.118 0.882 32 H 0.175 0.825 33 H 0.087 0.913 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.034 0.966 40 H 0.054 0.946 41 H 0.200 0.800 42 H 0.065 0.935 43 H 0.181 0.819 44 H 0.231 0.769 45 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -9.649 -24.649 -6.122 27.170 hybrid contribution -0.861 -1.874 -0.792 2.209 sum -10.510 -26.523 -6.914 29.355 Atomic orbital electron populations 1.21133 0.88433 1.04044 1.04381 1.20516 0.97881 0.90784 0.89818 1.22112 0.93643 0.99768 0.98780 1.21433 0.91687 0.92320 0.96187 1.17481 0.81039 0.87225 0.78234 1.90854 1.68703 1.29955 1.49739 1.48309 1.04233 1.09442 1.70151 1.22538 0.89821 0.87208 1.01739 1.22887 0.97008 0.97397 1.00410 1.22676 0.94994 0.96120 1.02231 1.21925 0.88787 0.86770 1.00052 0.90370 1.20867 0.95862 0.88504 0.92338 1.42206 1.46638 1.22930 1.26711 1.20051 1.21436 1.03505 1.00710 0.91819 1.25771 0.96425 0.98092 1.04077 1.70850 1.37723 1.39420 1.11186 0.83184 0.75880 0.75414 0.74067 1.22302 1.22203 1.21391 1.67876 1.39668 0.97676 1.12074 1.22958 0.90166 0.96501 0.92960 1.20917 0.95272 0.94231 1.08901 1.18029 0.86792 0.83939 0.75673 1.43742 1.11582 1.08493 1.77509 1.90795 1.13477 1.87178 1.49125 0.89624 0.91167 0.88213 0.82450 0.91341 0.88675 0.89951 0.90962 0.89956 0.89884 0.96567 0.94573 0.80030 0.93471 0.81878 0.76884 0.76060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.83 36.00 0.32 -0.76 16 2 C 0.02 0.18 5.95 -103.93 -0.62 -0.44 16 3 C -0.12 -1.41 9.30 -39.10 -0.36 -1.77 16 4 C 0.12 1.56 6.72 -82.93 -0.56 1.00 16 5 C 0.57 9.48 7.58 -12.10 -0.09 9.39 16 6 O -0.52 -10.38 15.48 5.38 0.08 -10.30 16 7 N -0.59 -9.15 3.06 -163.94 -0.50 -9.65 16 8 C 0.11 1.28 5.75 -2.53 -0.01 1.27 16 9 C -0.14 -1.50 7.09 -24.58 -0.17 -1.68 16 10 C -0.12 -1.79 6.01 -24.89 -0.15 -1.94 16 11 C 0.13 2.27 2.95 -66.95 -0.20 2.07 16 12 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 13 C 0.15 3.43 5.64 -4.04 -0.02 3.40 16 14 N -0.74 -19.55 5.44 -59.91 -0.33 -19.88 16 15 C -0.33 -9.67 9.99 -15.06 -0.15 -9.82 16 16 H 0.06 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 18 N -0.95 -29.85 13.70 55.49 0.76 -29.09 16 19 Si 1.08 26.88 29.92 -169.99 -5.09 21.80 16 20 H -0.30 -7.16 7.11 56.52 0.40 -6.75 16 21 H -0.30 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 N -0.46 -4.81 6.69 -9.48 -0.06 -4.87 16 24 C 0.14 1.00 10.70 -17.18 -0.18 0.82 16 25 C -0.19 -1.58 5.90 -104.73 -0.62 -2.20 16 26 C 0.57 4.46 8.01 -12.26 -0.10 4.36 16 27 N -0.85 -2.99 8.83 30.57 0.27 -2.72 16 28 O -0.53 -5.79 14.31 5.34 0.08 -5.72 16 29 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.52 8.06 -51.93 -0.42 0.10 16 31 H 0.10 0.94 5.95 -51.93 -0.31 0.63 16 32 H 0.16 1.81 7.63 -52.49 -0.40 1.41 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.98 6.21 -51.93 -0.32 0.66 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.08 1.31 7.79 -51.93 -0.40 0.91 16 39 H 0.02 0.38 8.06 -51.93 -0.42 -0.04 16 40 H 0.04 0.91 6.91 -51.93 -0.36 0.55 16 41 H 0.37 9.65 6.23 -40.82 -0.25 9.40 16 42 H 0.25 7.85 6.77 -40.82 -0.28 7.58 16 43 H 0.16 0.49 6.44 -52.49 -0.34 0.16 16 44 H 0.40 0.32 6.91 -40.82 -0.28 0.04 16 45 H 0.41 0.95 8.93 -40.82 -0.36 0.59 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -37.93 367.22 -8.16 -46.09 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -5.89 Total: 6.60 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -3.02 Total: 2.20 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: 0.14 Total: -66.21 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.16 Total: -16.01 kcal Atomic # 14 Polarization: 26.88 SS G_CDS: -5.09 Total: 21.80 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -37.93 -8.16 -46.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666458701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.855 kcal (2) G-P(sol) polarization free energy of solvation -37.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds