Wall clock time and date at job start Tue Mar 31 2020 16:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38388 * 120.85470 * 2 1 4 4 C 1.38318 * 119.30407 * 179.97438 * 3 2 1 5 5 N 1.31951 * 121.07769 * 0.02562 * 4 3 2 6 6 C 1.31660 * 121.88286 * 359.97438 * 5 4 3 7 7 C 1.39567 * 120.56740 * 359.74764 * 6 5 4 8 8 C 1.47839 * 120.56286 * 180.28348 * 7 6 5 9 9 O 1.21548 * 120.00088 * 186.41401 * 8 7 6 10 10 N 1.34781 * 119.99997 * 6.40720 * 8 7 6 11 11 C 1.46494 * 119.99796 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.46970 * 185.03723 * 11 10 8 13 13 N 1.46895 * 115.55205 * 279.75384 * 12 11 10 14 14 C 1.46902 * 111.00049 * 294.52976 * 13 12 11 15 15 C 1.50703 * 109.47138 * 184.66266 * 14 13 12 16 16 O 1.21295 * 119.99849 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99954 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99705 * 179.97438 * 17 15 14 19 19 H 1.07993 * 119.99888 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99899 * 179.97438 * 18 17 15 21 21 N 1.31410 * 120.00147 * 179.97438 * 20 18 17 22 22 Si 1.86802 * 119.99750 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47360 * 90.00330 * 22 20 18 24 24 H 1.48499 * 109.47060 * 210.00138 * 22 20 18 25 25 H 1.48497 * 109.47445 * 330.00169 * 22 20 18 26 26 C 1.53001 * 117.49673 * 134.08496 * 12 11 10 27 27 C 1.53004 * 117.49657 * 65.42735 * 12 11 10 28 28 H 1.08993 * 109.47015 * 96.44094 * 1 2 3 29 29 H 1.08997 * 109.46551 * 336.43778 * 1 2 3 30 30 H 1.09004 * 109.47058 * 216.44293 * 1 2 3 31 31 H 1.07998 * 120.35414 * 359.95894 * 3 2 1 32 32 H 1.07997 * 119.45902 * 179.97438 * 4 3 2 33 33 H 1.08009 * 119.71962 * 180.02562 * 6 5 4 34 34 H 0.96998 * 119.99796 * 0.02562 * 10 8 7 35 35 H 1.09005 * 109.47599 * 305.04211 * 11 10 8 36 36 H 1.08999 * 109.47091 * 65.03804 * 11 10 8 37 37 H 1.00901 * 111.00108 * 170.57168 * 13 12 11 38 38 H 1.09003 * 109.46973 * 304.65402 * 14 13 12 39 39 H 1.09001 * 109.47435 * 64.65538 * 14 13 12 40 40 H 0.96995 * 120.00054 * 359.97438 * 17 15 14 41 41 H 0.96996 * 120.00230 * 179.97438 * 21 20 18 42 42 H 1.09002 * 117.49787 * 359.97438 * 26 12 11 43 43 H 1.09000 * 117.49782 * 145.02042 * 26 12 11 44 44 H 1.08997 * 117.49654 * 214.97518 * 27 12 11 45 45 H 1.08996 * 117.49609 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2168 1.1880 0.0000 4 6 3.5995 1.1506 0.0005 5 7 4.2498 0.0025 0.0005 6 6 3.6198 -1.1536 0.0005 7 6 2.2249 -1.2018 0.0058 8 6 1.5176 -2.4999 0.0121 9 8 0.3078 -2.5335 -0.1009 10 7 2.2142 -3.6463 0.1431 11 6 1.5132 -4.9326 0.1499 12 6 2.5118 -6.0561 0.4355 13 7 3.3134 -6.4985 -0.7132 14 6 2.4656 -7.1223 -1.7379 15 6 3.3323 -7.6645 -2.8451 16 8 4.5377 -7.5428 -2.7866 17 7 2.7679 -8.2837 -3.9009 18 6 3.5564 -8.7765 -4.9084 19 1 4.6296 -8.6682 -4.8562 20 6 2.9747 -9.4154 -5.9966 21 7 3.7304 -9.8873 -6.9625 22 14 1.1183 -9.6034 -6.0863 23 1 0.5346 -8.4277 -6.7807 24 1 0.7817 -10.8393 -6.8376 25 1 0.5628 -9.6928 -4.7121 26 6 2.1098 -7.1136 1.4656 27 6 3.1794 -6.0748 1.8121 28 1 -0.3633 -0.1153 -1.0211 29 1 -0.3632 0.9420 0.4108 30 1 -0.3633 -0.8267 0.6105 31 1 1.6967 2.1345 -0.0007 32 1 4.1559 2.0762 0.0001 33 1 4.1872 -2.0727 0.0010 34 1 3.1796 -3.6196 0.2335 35 1 0.7451 -4.9239 0.9233 36 1 1.0482 -5.0982 -0.8220 37 1 4.0484 -7.1252 -0.4214 38 1 1.8953 -7.9367 -1.2911 39 1 1.7799 -6.3787 -2.1442 40 1 1.8040 -8.3807 -3.9478 41 1 3.3243 -10.3336 -7.7220 42 1 1.1341 -7.0087 1.9401 43 1 2.4405 -8.1375 1.2911 44 1 4.2133 -6.4158 1.8654 45 1 2.9075 -5.2865 2.5140 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670764739.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:30:33 Heat of formation + Delta-G solvation = 0.472095 kcal Electronic energy + Delta-G solvation = -27603.789856 eV Core-core repulsion = 23622.386734 eV Total energy + Delta-G solvation = -3981.403122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02875 -39.61367 -38.76128 -37.93763 -34.80532 -34.10899 -33.85772 -32.75668 -31.84208 -31.66818 -28.54231 -27.14777 -26.74595 -24.54062 -23.94176 -22.71127 -22.45051 -20.88016 -19.93390 -19.42937 -18.40206 -17.97070 -17.02942 -16.66914 -16.52043 -15.87510 -15.65123 -15.48349 -15.19653 -14.90721 -14.84827 -14.25491 -14.15144 -13.92570 -13.75863 -13.13245 -13.09888 -13.00621 -12.94190 -12.70877 -12.62997 -12.39222 -12.27223 -12.19888 -11.77090 -11.74380 -11.23904 -10.96301 -10.61445 -10.46199 -10.26260 -10.00158 -9.88507 -9.61856 -9.60366 -9.57784 -9.18933 -8.60728 -8.27007 -8.20289 -6.34020 -3.85758 0.33635 0.85791 2.62614 2.78787 3.00895 3.05971 3.13938 3.51712 3.52869 3.68081 3.96927 3.98019 4.08133 4.31765 4.35412 4.35919 4.48202 4.55146 4.65268 4.75710 4.77593 5.03933 5.18879 5.19573 5.25236 5.36484 5.42094 5.44677 5.45577 5.50603 5.56583 5.65160 5.67043 5.78073 5.80120 5.86954 5.90100 6.02279 6.21672 6.27255 6.95223 7.27673 7.42140 7.53589 7.54249 7.96636 8.10665 8.55525 8.91215 9.38776 9.77411 10.78911 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.002571 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.551793 B =10889.736355 C =11509.759944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.019 3.981 3 C -0.187 4.187 4 C 0.123 3.877 5 N -0.492 5.492 6 C 0.143 3.857 7 C -0.193 4.193 8 C 0.563 3.437 9 O -0.535 6.535 10 N -0.710 5.710 11 C 0.169 3.831 12 C 0.033 3.967 13 N -0.628 5.628 14 C 0.047 3.953 15 C 0.448 3.552 16 O -0.567 6.567 17 N -0.588 5.588 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.042 3.958 21 N -0.880 5.880 22 Si 0.879 3.121 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.269 1.269 26 C -0.204 4.204 27 C -0.164 4.164 28 H 0.083 0.917 29 H 0.063 0.937 30 H 0.099 0.901 31 H 0.141 0.859 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.406 0.594 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.358 0.642 38 H 0.050 0.950 39 H 0.088 0.912 40 H 0.371 0.629 41 H 0.274 0.726 42 H 0.098 0.902 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.669 17.715 19.332 27.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.207 4.207 4 C -0.032 4.032 5 N -0.200 5.200 6 C -0.016 4.016 7 C -0.198 4.198 8 C 0.350 3.650 9 O -0.413 6.413 10 N -0.362 5.362 11 C 0.045 3.955 12 C -0.060 4.060 13 N -0.259 5.259 14 C -0.085 4.085 15 C 0.234 3.766 16 O -0.449 6.449 17 N -0.227 5.227 18 C -0.435 4.435 19 H 0.138 0.862 20 C -0.161 4.161 21 N -0.519 5.519 22 Si 0.706 3.294 23 H -0.195 1.195 24 H -0.201 1.201 25 H -0.195 1.195 26 C -0.245 4.245 27 C -0.202 4.202 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.159 0.841 32 H 0.178 0.822 33 H 0.178 0.822 34 H 0.242 0.758 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.179 0.821 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.204 0.796 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.766 18.251 18.727 27.011 hybrid contribution -1.987 -1.164 0.085 2.304 sum -8.753 17.088 18.812 26.879 Atomic orbital electron populations 1.21101 0.89084 1.03482 1.04264 1.20507 0.97568 0.91342 0.89562 1.22086 0.95595 0.98688 1.04295 1.23005 0.91775 0.96508 0.91954 1.67723 1.40818 0.98282 1.13222 1.23066 0.90412 0.96765 0.91353 1.20862 0.95248 0.94282 1.09447 1.17992 0.86884 0.83447 0.76714 1.90732 1.13564 1.87136 1.49908 1.45799 1.11382 1.05301 1.73704 1.20735 0.92373 0.79665 1.02745 1.21877 0.98899 0.98158 0.87079 1.59916 1.11495 1.45916 1.08618 1.21729 0.95637 0.98075 0.93104 1.19654 0.88900 0.83782 0.84272 1.90569 1.14507 1.60758 1.79105 1.42192 1.08114 1.52437 1.19924 1.19428 0.94045 1.33223 0.96782 0.86246 1.25045 0.98403 0.97027 0.95619 1.69618 1.35335 1.37571 1.09420 0.86677 0.85225 0.78996 0.78535 1.19526 1.20137 1.19481 1.23650 1.00222 0.96061 1.04542 1.23168 0.98675 1.01989 0.96340 0.89884 0.91854 0.88292 0.84119 0.82223 0.82175 0.75805 0.90500 0.90485 0.82092 0.93215 0.89340 0.79631 0.91554 0.88367 0.88287 0.87992 0.88101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.85 36.01 0.32 -0.76 16 2 C 0.02 0.18 5.95 -103.91 -0.62 -0.44 16 3 C -0.19 -1.43 9.78 -39.50 -0.39 -1.81 16 4 C 0.12 1.01 11.17 -17.47 -0.20 0.81 16 5 N -0.49 -5.17 10.35 -12.91 -0.13 -5.30 16 6 C 0.14 1.44 10.70 -17.13 -0.18 1.25 16 7 C -0.19 -2.05 5.89 -104.82 -0.62 -2.66 16 8 C 0.56 6.61 7.72 -12.33 -0.10 6.52 16 9 O -0.53 -7.50 13.50 5.32 0.07 -7.43 16 10 N -0.71 -7.35 5.47 -61.25 -0.33 -7.69 16 11 C 0.17 1.80 5.68 -4.04 -0.02 1.77 16 12 C 0.03 0.35 1.79 -131.60 -0.24 0.11 16 13 N -0.63 -8.81 6.38 -101.21 -0.65 -9.46 16 14 C 0.05 0.74 5.93 -4.97 -0.03 0.71 16 15 C 0.45 9.92 7.81 -10.98 -0.09 9.84 16 16 O -0.57 -14.82 15.67 5.54 0.09 -14.74 16 17 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 18 C -0.31 -8.61 10.16 -14.93 -0.15 -8.76 16 19 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 21 N -0.88 -25.64 13.96 55.50 0.77 -24.86 16 22 Si 0.88 19.34 27.74 -169.99 -4.71 14.63 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.38 6.52 56.52 0.37 -5.01 16 26 C -0.20 -1.84 10.03 -26.69 -0.27 -2.11 16 27 C -0.16 -1.39 9.97 -26.69 -0.27 -1.66 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.40 8.06 -51.93 -0.42 -0.01 16 30 H 0.10 1.03 5.95 -51.93 -0.31 0.72 16 31 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 32 H 0.16 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.16 1.33 6.48 -52.48 -0.34 0.99 16 34 H 0.41 3.71 6.59 -40.82 -0.27 3.44 16 35 H 0.08 0.76 7.94 -51.93 -0.41 0.35 16 36 H 0.08 0.94 6.63 -51.93 -0.34 0.59 16 37 H 0.36 5.30 8.12 -39.29 -0.32 4.98 16 38 H 0.05 0.70 8.09 -51.93 -0.42 0.28 16 39 H 0.09 1.31 6.83 -51.93 -0.35 0.96 16 40 H 0.37 7.71 5.76 -40.82 -0.24 7.47 16 41 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 43 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -34.33 378.73 -8.11 -42.44 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -5.93 Total: 16.74 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -2.93 Total: 3.88 kcal Atomic # 7 Polarization: -60.82 SS G_CDS: -0.40 Total: -61.22 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: 0.16 Total: -22.17 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.71 Total: 14.63 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.33 -8.11 -42.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670764739.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.909 kcal (2) G-P(sol) polarization free energy of solvation -34.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds