Wall clock time and date at job start Tue Mar 31 2020 16:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38485 * 120.82033 * 2 1 4 4 C 1.39270 * 119.18798 * 179.75329 * 3 2 1 5 5 C 1.48330 * 119.57095 * 180.22651 * 4 3 2 6 6 O 1.21497 * 119.99993 * 0.29991 * 5 4 3 7 7 N 1.34775 * 120.00161 * 180.29688 * 5 4 3 8 8 C 1.46503 * 120.00021 * 180.02562 * 7 5 4 9 9 C 1.53784 * 113.61265 * 254.13683 * 8 7 5 10 10 C 1.53956 * 87.01961 * 220.04939 * 9 8 7 11 11 C 1.53000 * 113.66994 * 139.93377 * 10 9 8 12 12 N 1.46498 * 109.47231 * 87.43603 * 11 10 9 13 13 C 1.36936 * 120.00026 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00142 * 0.02562 * 13 12 11 15 15 C 1.38815 * 119.99890 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00048 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99991 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47132 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47219 * 120.00132 * 17 15 13 20 20 H 1.48505 * 109.47289 * 240.00171 * 17 15 13 21 21 C 1.53782 * 87.11007 * 25.36517 * 10 9 8 22 22 N 1.32743 * 120.85726 * 0.52931 * 4 3 2 23 23 C 1.31386 * 121.80356 * 359.72222 * 22 4 3 24 24 C 1.39772 * 120.71442 * 0.02562 * 23 22 4 25 25 C 1.48011 * 120.45986 * 179.97438 * 24 23 22 26 26 N 1.34773 * 119.99926 * 353.97712 * 25 24 23 27 27 O 1.21528 * 119.99922 * 173.97041 * 25 24 23 28 28 H 1.09002 * 109.46688 * 263.10642 * 1 2 3 29 29 H 1.08993 * 109.47347 * 143.10271 * 1 2 3 30 30 H 1.09001 * 109.46702 * 23.10104 * 1 2 3 31 31 H 1.07997 * 120.40804 * 359.96953 * 3 2 1 32 32 H 0.97001 * 119.99963 * 0.02562 * 7 5 4 33 33 H 1.08999 * 112.85006 * 25.33096 * 8 7 5 34 34 H 1.08996 * 113.61571 * 334.56738 * 9 8 7 35 35 H 1.08994 * 113.61403 * 105.47513 * 9 8 7 36 36 H 1.09000 * 113.61010 * 270.80246 * 10 9 8 37 37 H 1.08997 * 109.47103 * 207.44335 * 11 10 9 38 38 H 1.09001 * 109.46993 * 327.44062 * 11 10 9 39 39 H 0.97007 * 119.99784 * 0.02562 * 12 11 10 40 40 H 0.97005 * 119.99899 * 180.02562 * 16 15 13 41 41 H 1.09006 * 113.60948 * 220.09028 * 21 10 9 42 42 H 1.08989 * 113.69137 * 89.19902 * 21 10 9 43 43 H 1.08004 * 119.64435 * 180.02562 * 23 22 4 44 44 H 0.96999 * 120.00337 * 359.97438 * 26 25 24 45 45 H 0.97003 * 119.99861 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2166 1.1893 0.0000 4 6 3.6087 1.1496 0.0052 5 6 4.3772 2.4183 0.0104 6 8 3.7919 3.4830 0.0155 7 7 5.7246 2.3901 0.0094 8 6 6.4835 3.6432 0.0151 9 6 7.1313 3.9772 -1.3391 10 6 8.3604 4.4524 -0.5431 11 6 9.6946 4.0608 -1.1815 12 7 10.0955 5.0891 -2.1448 13 6 11.2648 4.9532 -2.8445 14 1 11.8912 4.0877 -2.6864 15 6 11.6449 5.9279 -3.7569 16 7 10.8818 6.9829 -3.9491 17 14 13.2395 5.7421 -4.7118 18 1 13.9097 4.4777 -4.3151 19 1 12.9444 5.7111 -6.1669 20 1 14.1326 6.8902 -4.4123 21 6 7.9086 3.4977 0.5746 22 7 4.2568 -0.0088 -0.0003 23 6 3.6205 -1.1583 -0.0055 24 6 2.2234 -1.2008 -0.0059 25 6 1.5123 -2.4989 -0.0123 26 7 2.2065 -3.6469 -0.1403 27 8 0.3024 -2.5294 0.0980 28 1 -0.3633 -0.1234 1.0203 29 1 -0.3634 -0.8218 -0.6169 30 1 -0.3633 0.9453 -0.4032 31 1 1.6968 2.1359 -0.0005 32 1 6.1919 1.5401 0.0050 33 1 5.9265 4.4735 0.4492 34 1 7.3243 3.1014 -1.9587 35 1 6.6247 4.7763 -1.8802 36 1 8.3183 5.5047 -0.2621 37 1 10.4560 3.9722 -0.4065 38 1 9.5853 3.1053 -1.6945 39 1 9.5327 5.8663 -2.2870 40 1 11.1473 7.6638 -4.5870 41 1 8.0285 3.9105 1.5763 42 1 8.3139 2.4904 0.4806 43 1 4.1830 -2.0803 -0.0096 44 1 3.1722 -3.6225 -0.2286 45 1 1.7405 -4.4977 -0.1442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674583178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:05 Heat of formation + Delta-G solvation = -8.230008 kcal Electronic energy + Delta-G solvation = -26838.666411 eV Core-core repulsion = 22856.885937 eV Total energy + Delta-G solvation = -3981.780473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.46012 -40.16743 -39.22907 -38.15497 -34.93871 -34.59094 -34.21081 -33.19290 -31.84975 -30.79925 -28.44180 -27.06824 -25.66161 -25.50586 -23.64681 -23.10880 -22.10449 -21.23502 -20.52231 -19.48626 -18.52110 -18.16654 -17.54803 -17.05381 -16.70176 -15.94897 -15.82978 -15.63749 -15.19371 -15.05418 -15.03876 -14.51488 -14.22355 -14.02908 -13.41897 -13.35822 -13.20891 -13.16365 -13.09107 -12.93288 -12.68612 -12.27855 -11.83704 -11.62628 -11.17632 -10.88004 -10.79442 -10.72764 -10.42156 -10.36331 -10.32880 -10.10260 -10.06569 -9.93762 -9.81043 -9.80713 -9.61589 -9.03381 -8.83503 -6.88136 -5.73861 -3.02142 -0.24901 0.61683 1.96459 2.64953 2.77938 2.87033 3.38975 3.44567 3.49790 3.52352 3.56152 4.02755 4.13647 4.24139 4.40995 4.59659 4.62367 4.68810 4.82293 4.94667 5.04353 5.11372 5.16428 5.21201 5.29424 5.55385 5.59967 5.71306 5.79661 5.84798 5.92529 5.95398 6.05736 6.10092 6.16524 6.23690 6.27644 6.43429 6.60354 6.64829 6.79918 6.93171 7.04578 7.41575 7.59510 7.72375 7.97173 8.45231 9.56230 10.15681 10.50077 11.49113 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021387 B = 0.001821 C = 0.001757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.875701 B =15369.751362 C =15930.070907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.018 3.982 3 C -0.122 4.122 4 C 0.112 3.888 5 C 0.566 3.434 6 O -0.528 6.528 7 N -0.693 5.693 8 C 0.114 3.886 9 C -0.138 4.138 10 C -0.110 4.110 11 C 0.165 3.835 12 N -0.732 5.732 13 C -0.238 4.238 14 H 0.070 0.930 15 C -0.016 4.016 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.292 1.292 21 C -0.136 4.136 22 N -0.466 5.466 23 C 0.140 3.860 24 C -0.185 4.185 25 C 0.570 3.430 26 N -0.848 5.848 27 O -0.528 6.528 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.070 0.930 31 H 0.158 0.842 32 H 0.411 0.589 33 H 0.115 0.885 34 H 0.085 0.915 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.384 0.616 40 H 0.254 0.746 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.166 0.834 44 H 0.402 0.598 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.923 -21.225 11.686 31.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 C -0.143 4.143 4 C -0.025 4.025 5 C 0.350 3.650 6 O -0.404 6.404 7 N -0.342 5.342 8 C 0.010 3.990 9 C -0.176 4.176 10 C -0.129 4.129 11 C 0.038 3.962 12 N -0.376 5.376 13 C -0.369 4.369 14 H 0.088 0.912 15 C -0.212 4.212 16 N -0.582 5.582 17 Si 0.738 3.262 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.219 1.219 21 C -0.174 4.174 22 N -0.177 5.177 23 C -0.022 4.022 24 C -0.191 4.191 25 C 0.355 3.645 26 N -0.412 5.412 27 O -0.405 6.405 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.175 0.825 32 H 0.247 0.753 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.037 0.963 38 H 0.037 0.963 39 H 0.218 0.782 40 H 0.064 0.936 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.183 0.817 44 H 0.232 0.768 45 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -20.024 -20.291 11.716 30.821 hybrid contribution 0.510 -0.650 -0.725 1.100 sum -19.514 -20.941 10.991 30.661 Atomic orbital electron populations 1.21134 0.88384 1.04092 1.04378 1.20529 0.97931 0.90816 0.89804 1.22112 0.93719 0.99709 0.98761 1.21480 0.91829 0.92438 0.96783 1.17894 0.82824 0.87085 0.77202 1.90808 1.69724 1.30018 1.49878 1.45924 1.05399 1.10638 1.72276 1.22809 0.90847 0.86575 0.98723 1.23482 0.96399 1.01834 0.95915 1.22566 0.95523 0.99414 0.95439 1.20599 0.91586 0.92473 0.91578 1.42366 1.25044 1.23685 1.46525 1.19284 0.97688 1.04394 1.15580 0.91189 1.24752 0.98932 0.97143 1.00364 1.69674 1.38329 1.11261 1.38907 0.86119 0.83202 0.77161 0.79724 1.20596 1.21912 1.21899 1.23330 0.93934 1.00981 0.99203 1.67559 1.40538 0.97721 1.11909 1.22904 0.90163 0.96305 0.92804 1.20949 0.95260 0.94348 1.08505 1.18008 0.86761 0.83920 0.75811 1.43746 1.11882 1.08646 1.76966 1.90801 1.13560 1.87085 1.49085 0.89605 0.88214 0.91140 0.82470 0.75274 0.86759 0.89674 0.90967 0.88774 0.96307 0.96327 0.78243 0.93597 0.90860 0.89519 0.81729 0.76818 0.75978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.90 8.83 36.01 0.32 -0.59 16 2 C 0.02 0.15 5.95 -103.93 -0.62 -0.47 16 3 C -0.12 -1.15 9.30 -39.11 -0.36 -1.51 16 4 C 0.11 1.18 6.75 -82.94 -0.56 0.62 16 5 C 0.57 7.18 7.82 -12.11 -0.09 7.09 16 6 O -0.53 -8.22 15.93 5.37 0.09 -8.13 16 7 N -0.69 -7.95 5.35 -53.80 -0.29 -8.24 16 8 C 0.11 1.44 4.21 -67.11 -0.28 1.16 16 9 C -0.14 -2.04 7.45 -25.83 -0.19 -2.23 16 10 C -0.11 -1.72 3.75 -89.71 -0.34 -2.06 16 11 C 0.17 3.27 6.10 -4.04 -0.02 3.25 16 12 N -0.73 -18.68 5.60 -59.91 -0.34 -19.02 16 13 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 15 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 16 N -0.93 -28.56 13.06 55.49 0.72 -27.83 16 17 Si 0.91 22.58 29.55 -169.99 -5.02 17.55 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 21 C -0.14 -1.62 7.39 -25.92 -0.19 -1.81 16 22 N -0.47 -4.17 9.52 -9.48 -0.09 -4.26 16 23 C 0.14 0.90 10.69 -17.17 -0.18 0.71 16 24 C -0.19 -1.36 5.90 -104.72 -0.62 -1.97 16 25 C 0.57 3.96 8.00 -12.26 -0.10 3.86 16 26 N -0.85 -2.46 8.83 30.57 0.27 -2.19 16 27 O -0.53 -5.31 14.33 5.34 0.08 -5.24 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.10 0.83 5.96 -51.93 -0.31 0.52 16 30 H 0.07 0.42 8.06 -51.93 -0.42 0.00 16 31 H 0.16 1.41 7.63 -52.49 -0.40 1.01 16 32 H 0.41 4.04 8.03 -40.82 -0.33 3.71 16 33 H 0.11 1.53 7.50 -51.93 -0.39 1.14 16 34 H 0.08 1.29 7.90 -51.93 -0.41 0.88 16 35 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.02 0.37 7.85 -51.93 -0.41 -0.03 16 39 H 0.38 10.33 7.67 -40.82 -0.31 10.02 16 40 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.09 0.94 8.07 -51.94 -0.42 0.53 16 43 H 0.17 0.39 6.46 -52.48 -0.34 0.05 16 44 H 0.40 0.12 6.93 -40.82 -0.28 -0.17 16 45 H 0.41 0.73 8.93 -40.82 -0.36 0.36 16 LS Contribution 378.96 15.07 5.71 5.71 Total: -1.00 -35.75 378.96 -8.40 -44.15 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -6.04 Total: 8.92 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -3.49 Total: -1.42 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.28 Total: -61.55 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.16 Total: -13.37 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.75 -8.40 -44.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674583178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.922 kcal (2) G-P(sol) polarization free energy of solvation -35.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds