Wall clock time and date at job start Tue Mar 31 2020 16:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46502 * 110.87943 * 2 1 4 4 C 1.34768 * 120.00622 * 62.42992 * 3 2 1 5 5 O 1.21283 * 119.99679 * 359.97438 * 4 3 2 6 6 C 1.50698 * 120.00263 * 179.97438 * 4 3 2 7 7 N 1.46505 * 109.47128 * 180.02562 * 6 4 3 8 8 C 1.34777 * 119.99722 * 180.02562 * 7 6 4 9 9 O 1.21513 * 120.00316 * 359.97438 * 8 7 6 10 10 C 1.48176 * 119.99591 * 179.71962 * 8 7 6 11 11 C 1.39305 * 119.72165 * 180.27029 * 10 8 7 12 12 C 1.38581 * 119.05992 * 180.02562 * 11 10 8 13 13 C 1.38626 * 118.48768 * 0.02562 * 12 11 10 14 14 C 1.38556 * 119.35272 * 359.97438 * 13 12 11 15 15 N 1.31523 * 120.90201 * 359.72518 * 14 13 12 16 16 C 1.55149 * 111.03871 * 236.09306 * 2 1 3 17 17 C 1.54319 * 102.94378 * 206.40916 * 16 2 1 18 18 N 1.47020 * 107.27417 * 22.19065 * 17 16 2 19 19 C 1.36936 * 125.65521 * 181.09859 * 18 17 16 20 20 H 1.08000 * 119.99920 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99624 * 359.95900 * 19 18 17 22 22 N 1.31624 * 120.00272 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99930 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47162 * 59.99815 * 23 21 19 25 25 H 1.48500 * 109.47009 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.46772 * 299.99528 * 23 21 19 27 27 C 1.47435 * 108.69897 * 1.06169 * 18 17 16 28 28 H 1.08999 * 109.47259 * 60.70786 * 1 2 3 29 29 H 1.09004 * 109.46521 * 180.70707 * 1 2 3 30 30 H 1.09000 * 109.47014 * 300.69846 * 1 2 3 31 31 H 0.97003 * 119.99575 * 242.42273 * 3 2 1 32 32 H 1.08995 * 109.47517 * 59.99701 * 6 4 3 33 33 H 1.09001 * 109.46874 * 299.99382 * 6 4 3 34 34 H 0.97000 * 119.99795 * 359.97438 * 7 6 4 35 35 H 1.08007 * 120.47100 * 0.02983 * 11 10 8 36 36 H 1.08003 * 120.75698 * 180.02562 * 12 11 10 37 37 H 1.08002 * 120.32254 * 180.02562 * 13 12 11 38 38 H 1.08005 * 119.54762 * 180.02562 * 14 13 12 39 39 H 1.08998 * 110.72515 * 324.77094 * 16 2 1 40 40 H 1.09006 * 110.72260 * 88.04484 * 16 2 1 41 41 H 1.09011 * 109.88036 * 262.77824 * 17 16 2 42 42 H 1.08996 * 109.89005 * 141.61450 * 17 16 2 43 43 H 0.97000 * 120.00195 * 179.97438 * 22 21 19 44 44 H 1.08999 * 110.36716 * 217.02785 * 27 18 17 45 45 H 1.09000 * 110.36431 * 94.71165 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0522 1.3688 0.0000 4 6 1.7877 2.1910 1.0345 5 8 1.1170 1.7979 1.9654 6 6 2.3253 3.5989 1.0347 7 7 1.9025 4.2829 2.2593 8 6 2.2684 5.5616 2.4775 9 8 2.9493 6.1469 1.6588 10 6 1.8356 6.2554 3.7132 11 6 2.2123 7.5789 3.9303 12 6 1.8003 8.2143 5.0909 13 6 1.0260 7.5035 5.9947 14 6 0.6885 6.1893 5.7138 15 7 1.0882 5.6123 4.6015 16 6 2.0870 -0.8078 -1.2018 17 6 3.4684 -1.2732 -0.6951 18 7 3.4276 -1.2419 0.7742 19 6 4.4648 -1.5634 1.6085 20 1 4.3338 -1.5077 2.6791 21 6 5.6843 -1.9611 1.0782 22 7 5.8437 -2.0298 -0.2265 23 14 7.0991 -2.4005 2.2163 24 1 6.6996 -3.5347 3.0875 25 1 8.2823 -2.7894 1.4077 26 1 7.4400 -1.2257 3.0582 27 6 2.0853 -0.8061 1.2007 28 1 -0.3634 0.5028 -0.8962 29 1 -0.3632 -1.0277 0.0127 30 1 -0.3633 0.5246 0.8837 31 1 2.5884 1.6833 -0.7447 32 1 1.9404 4.1349 0.1673 33 1 3.4142 3.5720 0.9915 34 1 1.3587 3.8158 2.9127 35 1 2.8169 8.1023 3.2043 36 1 2.0762 9.2399 5.2868 37 1 0.6883 7.9698 6.9084 38 1 0.0850 5.6328 6.4155 39 1 1.4483 -1.6635 -1.4207 40 1 2.1931 -0.1699 -2.0794 41 1 4.2433 -0.5983 -1.0588 42 1 3.6667 -2.2883 -1.0388 43 1 6.6960 -2.3074 -0.5971 44 1 2.1553 -0.1713 2.0840 45 1 1.4523 -1.6701 1.4028 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699827751.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:15 Heat of formation + Delta-G solvation = -0.687592 kcal Electronic energy + Delta-G solvation = -28197.746618 eV Core-core repulsion = 24216.293208 eV Total energy + Delta-G solvation = -3981.453410 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.86400 -40.01768 -38.94281 -37.36142 -34.58905 -33.95838 -32.91168 -32.03559 -31.72725 -30.14597 -28.73108 -27.80206 -25.66380 -24.63747 -23.79770 -23.57389 -21.24657 -20.70014 -20.15707 -19.13713 -18.67011 -17.08921 -17.05418 -16.47522 -16.07705 -15.89030 -15.80844 -15.25169 -15.03867 -14.87205 -14.60450 -14.12439 -13.93119 -13.67125 -13.56345 -13.33260 -13.03963 -12.81772 -12.61663 -12.31998 -11.99474 -11.94963 -11.74959 -11.66226 -10.89056 -10.85897 -10.54991 -10.42885 -10.36972 -10.33805 -10.09983 -10.00900 -9.83222 -9.64293 -9.58014 -9.38020 -9.19521 -8.67702 -8.54704 -6.78794 -5.69191 -3.01142 0.33612 0.86718 2.53619 2.74466 2.83642 3.42905 3.47030 3.48286 3.53041 3.60290 3.89874 4.44689 4.50856 4.52634 4.62745 4.70246 4.79072 5.06413 5.12558 5.27798 5.36197 5.37458 5.42290 5.48532 5.61413 5.62172 5.72378 5.73259 5.98106 6.11103 6.13614 6.20279 6.22137 6.33224 6.39140 6.52046 6.65941 6.81681 7.08833 7.25969 7.55425 7.56638 7.57275 7.77037 7.82678 8.04687 8.27849 8.43935 9.25319 9.85338 10.51124 11.42784 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.002849 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.207488 B = 9825.287001 C =10941.573151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.156 3.844 3 N -0.695 5.695 4 C 0.513 3.487 5 O -0.536 6.536 6 C 0.097 3.903 7 N -0.693 5.693 8 C 0.572 3.428 9 O -0.537 6.537 10 C 0.082 3.918 11 C -0.112 4.112 12 C -0.083 4.083 13 C -0.152 4.152 14 C 0.099 3.901 15 N -0.455 5.455 16 C -0.146 4.146 17 C 0.177 3.823 18 N -0.603 5.603 19 C -0.222 4.222 20 H 0.075 0.925 21 C -0.009 4.009 22 N -0.925 5.925 23 Si 0.911 3.089 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.131 3.869 28 H 0.050 0.950 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.401 0.599 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.423 0.577 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.164 0.836 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.044 0.956 43 H 0.252 0.748 44 H 0.056 0.944 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.100 18.402 5.160 22.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.070 3.930 3 N -0.345 5.345 4 C 0.298 3.702 5 O -0.413 6.413 6 C -0.031 4.031 7 N -0.347 5.347 8 C 0.356 3.644 9 O -0.413 6.413 10 C -0.056 4.056 11 C -0.133 4.133 12 C -0.109 4.109 13 C -0.172 4.172 14 C -0.060 4.060 15 N -0.166 5.166 16 C -0.185 4.185 17 C 0.052 3.948 18 N -0.329 5.329 19 C -0.351 4.351 20 H 0.093 0.907 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.741 3.259 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.213 1.213 27 C 0.004 3.996 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.235 0.765 32 H 0.116 0.884 33 H 0.121 0.879 34 H 0.263 0.737 35 H 0.167 0.833 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.181 0.819 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.074 0.926 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -12.085 17.519 4.990 21.860 hybrid contribution 1.153 0.498 0.696 1.436 sum -10.932 18.017 5.686 21.828 Atomic orbital electron populations 1.21990 0.94286 1.02247 1.02233 1.21525 0.92542 0.80485 0.98469 1.45689 1.53846 1.12767 1.22200 1.20215 0.80505 0.86826 0.82677 1.90661 1.39544 1.76301 1.34809 1.21152 1.01969 0.91109 0.88822 1.45523 1.53894 1.12534 1.22766 1.17827 0.79986 0.81556 0.85000 1.90793 1.38618 1.66269 1.45648 1.21096 0.97307 0.92481 0.94735 1.22147 0.98662 0.94411 0.98057 1.21644 0.95613 1.00614 0.93031 1.22414 0.98230 0.95991 1.00560 1.22860 0.97008 0.92636 0.93527 1.67602 1.08713 1.37938 1.02372 1.23233 1.00522 0.98902 0.95851 1.21159 0.89962 0.99944 0.83718 1.44435 1.07738 1.78969 1.01780 1.19008 0.89356 1.37762 0.88957 0.90670 1.24759 0.97737 1.01991 0.96008 1.69933 1.24185 1.53990 1.09182 0.86214 0.81877 0.78285 0.79504 1.21208 1.21633 1.21266 1.21894 0.87578 0.94904 0.95205 0.93102 0.91778 0.91037 0.76485 0.88369 0.87931 0.73664 0.83302 0.84000 0.84154 0.81856 0.90830 0.91683 0.93612 0.93832 0.93809 0.92592 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 8.62 37.16 0.32 -1.87 16 2 C 0.16 2.68 0.82 -129.67 -0.11 2.57 16 3 N -0.69 -10.78 5.17 -45.63 -0.24 -11.02 16 4 C 0.51 8.09 7.29 -10.99 -0.08 8.01 16 5 O -0.54 -9.81 12.44 5.55 0.07 -9.74 16 6 C 0.10 1.30 6.15 -5.19 -0.03 1.27 16 7 N -0.69 -9.77 5.52 -62.32 -0.34 -10.11 16 8 C 0.57 8.14 7.81 -12.18 -0.10 8.05 16 9 O -0.54 -8.64 16.32 5.35 0.09 -8.55 16 10 C 0.08 1.00 6.75 -83.01 -0.56 0.44 16 11 C -0.11 -1.09 9.63 -39.06 -0.38 -1.46 16 12 C -0.08 -0.57 10.17 -39.31 -0.40 -0.97 16 13 C -0.15 -0.97 10.11 -39.32 -0.40 -1.36 16 14 C 0.10 0.83 11.18 -17.57 -0.20 0.63 16 15 N -0.45 -5.32 9.54 -9.80 -0.09 -5.41 16 16 C -0.15 -2.53 5.99 -24.90 -0.15 -2.68 16 17 C 0.18 4.13 5.36 -3.07 -0.02 4.12 16 18 N -0.60 -15.36 3.39 -170.07 -0.58 -15.94 16 19 C -0.22 -6.30 10.28 -15.06 -0.15 -6.46 16 20 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 21 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 22 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C 0.13 2.84 6.11 -2.52 -0.02 2.82 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 30 H 0.07 1.14 6.45 -51.93 -0.34 0.80 16 31 H 0.40 5.41 8.49 -40.82 -0.35 5.06 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.10 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.42 6.20 6.77 -40.82 -0.28 5.92 16 35 H 0.15 1.35 7.64 -52.48 -0.40 0.95 16 36 H 0.14 0.55 8.06 -52.48 -0.42 0.13 16 37 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 38 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 39 H 0.07 1.19 8.04 -51.93 -0.42 0.78 16 40 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 41 H 0.05 1.17 7.38 -51.92 -0.38 0.78 16 42 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 44 H 0.06 1.31 6.32 -51.93 -0.33 0.98 16 45 H 0.03 0.54 8.03 -51.93 -0.42 0.13 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -34.56 372.88 -8.50 -43.06 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -6.22 Total: 8.28 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: -2.36 Total: 12.75 kcal Atomic # 7 Polarization: -68.24 SS G_CDS: -0.68 Total: -68.92 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: 0.16 Total: -18.29 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.56 -8.50 -43.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699827751.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.368 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds