Wall clock time and date at job start Tue Mar 31 2020 17:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30864 * 125.88387 * 2 1 4 4 N 1.40068 * 108.30026 * 179.78350 * 3 2 1 5 5 C 1.46505 * 126.01843 * 180.26466 * 4 3 2 6 6 C 1.50694 * 109.47198 * 270.18404 * 5 4 3 7 7 H 1.07998 * 120.00260 * 359.97438 * 6 5 4 8 8 C 1.37886 * 119.99913 * 180.02562 * 6 5 4 9 9 N 1.31514 * 119.99703 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99861 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47142 * 59.99889 * 10 8 6 12 12 H 1.48501 * 109.46595 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.47083 * 299.99533 * 10 8 6 14 14 C 1.35236 * 107.96420 * 0.42269 * 4 3 2 15 15 C 1.50703 * 126.16413 * 179.84959 * 14 4 3 16 16 C 1.35641 * 107.67223 * 359.58206 * 14 4 3 17 17 O 1.36183 * 126.08187 * 180.29570 * 16 14 4 18 18 C 1.34194 * 116.99843 * 90.00381 * 17 16 14 19 19 O 1.21216 * 119.99792 * 359.97438 * 18 17 16 20 20 C 1.50704 * 120.00406 * 179.97438 * 18 17 16 21 21 C 1.52994 * 109.47379 * 180.02562 * 20 18 17 22 22 C 1.50694 * 109.46980 * 180.02562 * 21 20 18 23 23 C 1.39878 * 125.89683 * 124.71660 * 22 21 20 24 24 C 1.35316 * 107.91823 * 179.86318 * 23 22 21 25 25 N 1.34944 * 107.74426 * 0.39309 * 24 23 22 26 26 C 1.46510 * 126.03480 * 179.74759 * 25 24 23 27 27 N 1.30838 * 125.90008 * 305.02429 * 22 21 20 28 28 H 1.09001 * 109.46895 * 269.95846 * 1 2 3 29 29 H 1.08997 * 109.47706 * 29.95761 * 1 2 3 30 30 H 1.09003 * 109.47189 * 149.95410 * 1 2 3 31 31 H 1.09005 * 109.46438 * 30.18138 * 5 4 3 32 32 H 1.08995 * 109.46762 * 150.17665 * 5 4 3 33 33 H 0.96998 * 119.99598 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47152 * 269.71183 * 15 14 4 35 35 H 1.09001 * 109.46980 * 149.71284 * 15 14 4 36 36 H 1.09004 * 109.47113 * 29.71265 * 15 14 4 37 37 H 1.08994 * 109.46704 * 300.00610 * 20 18 17 38 38 H 1.09000 * 109.46790 * 60.00143 * 20 18 17 39 39 H 1.09005 * 109.47351 * 300.00342 * 21 20 18 40 40 H 1.09000 * 109.47072 * 60.00280 * 21 20 18 41 41 H 1.07998 * 126.03791 * 359.97438 * 23 22 21 42 42 H 1.07998 * 126.12859 * 180.15076 * 24 23 22 43 43 H 1.09000 * 109.47313 * 269.97986 * 26 25 24 44 44 H 1.09005 * 109.46986 * 29.98058 * 26 25 24 45 45 H 1.09005 * 109.46726 * 149.97873 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0603 0.0000 4 7 3.6093 0.6371 0.0050 5 6 4.7885 1.5065 0.0122 6 6 5.1965 1.8113 -1.4061 7 1 4.6340 1.3985 -2.2304 8 6 6.2886 2.6165 -1.6514 9 7 6.9739 3.1189 -0.6475 10 14 6.7947 2.9939 -3.4095 11 1 5.6789 3.6796 -4.1094 12 1 7.9899 3.8752 -3.4021 13 1 7.1173 1.7273 -4.1143 14 6 3.6183 -0.7152 -0.0014 15 6 4.8409 -1.5964 -0.0024 16 6 2.3287 -1.1356 -0.0009 17 8 1.9073 -2.4305 -0.0005 18 6 1.7191 -3.0096 1.1953 19 8 1.9243 -2.3818 2.2117 20 6 1.2529 -4.4405 1.2747 21 6 1.1187 -4.8526 2.7420 22 6 0.6530 -6.2836 2.8213 23 6 1.2957 -7.3183 3.5090 24 6 0.5661 -8.4455 3.3417 25 7 -0.4957 -8.1371 2.5681 26 6 -1.5436 -9.0641 2.1333 27 7 -0.4192 -6.7740 2.2542 28 1 -0.3633 -0.0007 1.0277 29 1 -0.3634 0.8903 -0.5131 30 1 -0.3634 -0.8896 -0.5146 31 1 4.5514 2.4360 0.5299 32 1 5.6077 1.0033 0.5258 33 1 7.7419 3.6856 -0.8201 34 1 5.1354 -1.8081 -1.0303 35 1 4.6154 -2.5312 0.5108 36 1 5.6562 -1.0872 0.5116 37 1 0.2858 -4.5354 0.7811 38 1 1.9781 -5.0869 0.7803 39 1 2.0857 -4.7576 3.2361 40 1 0.3932 -4.2062 3.2360 41 1 2.2114 -7.2322 4.0751 42 1 0.7949 -9.4186 3.7504 43 1 -1.2565 -9.5180 1.1848 44 1 -1.6738 -9.8434 2.8844 45 1 -2.4801 -8.5207 2.0074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001772392371.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:31:56 Heat of formation + Delta-G solvation = 63.629800 kcal Electronic energy + Delta-G solvation = -27452.068881 eV Core-core repulsion = 23473.404483 eV Total energy + Delta-G solvation = -3978.664398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48414 -41.14719 -39.67154 -36.60634 -34.80437 -33.98707 -32.56662 -32.26782 -30.78413 -30.27127 -29.04500 -27.75506 -26.38339 -25.95456 -24.71080 -22.82411 -21.56147 -21.25684 -19.74129 -19.37867 -19.15761 -17.60795 -17.11062 -16.85171 -16.47114 -16.02866 -15.75404 -15.22745 -14.58225 -14.44901 -14.26094 -14.22347 -13.77345 -13.56322 -13.27567 -12.95199 -12.94962 -12.89803 -12.69952 -12.49449 -12.43912 -12.13024 -12.00445 -11.94056 -11.68372 -11.53983 -11.44932 -11.05074 -10.91124 -10.79160 -10.77421 -10.37059 -10.26284 -9.79357 -9.68584 -9.52237 -8.86313 -8.66482 -8.33464 -7.65774 -6.28609 -4.36599 1.56962 2.18128 2.35517 2.41873 2.53173 2.81049 3.22446 3.26414 3.28012 3.36807 3.66059 4.14224 4.27709 4.44885 4.62666 4.73216 4.75956 4.88197 4.98157 5.02374 5.07194 5.18633 5.26926 5.38639 5.44397 5.48833 5.64205 5.64474 5.77158 5.85636 5.85870 5.93740 5.97942 6.13182 6.17335 6.29869 6.36843 6.52186 6.68106 6.71417 6.95757 7.02335 7.30701 7.42654 7.61394 7.82894 7.85780 8.25330 8.47083 8.69167 9.29776 10.79113 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.023986 B = 0.002107 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.052481 B =13285.514289 C =13688.550638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.059 3.941 3 N -0.281 5.281 4 N -0.313 5.313 5 C 0.257 3.743 6 C -0.539 4.539 7 H 0.065 0.935 8 C 0.067 3.933 9 N -0.890 5.890 10 Si 0.908 3.092 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.274 1.274 14 C 0.103 3.897 15 C -0.084 4.084 16 C -0.104 4.104 17 O -0.253 6.253 18 C 0.440 3.560 19 O -0.496 6.496 20 C -0.103 4.103 21 C -0.026 4.026 22 C 0.077 3.923 23 C -0.266 4.266 24 C 0.052 3.948 25 N -0.379 5.379 26 C 0.102 3.898 27 N -0.292 5.292 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.269 0.731 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.149 0.851 42 H 0.173 0.827 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 -24.966 6.519 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 N -0.105 5.105 4 N -0.094 5.094 5 C 0.140 3.860 6 C -0.578 4.578 7 H 0.083 0.917 8 C -0.137 4.137 9 N -0.528 5.528 10 Si 0.735 3.265 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.199 1.199 14 C -0.030 4.030 15 C -0.142 4.142 16 C -0.158 4.158 17 O -0.165 6.165 18 C 0.283 3.717 19 O -0.382 6.382 20 C -0.141 4.141 21 C -0.066 4.066 22 C -0.089 4.089 23 C -0.295 4.295 24 C -0.094 4.094 25 N -0.161 5.161 26 C -0.040 4.040 27 N -0.115 5.115 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.167 0.833 42 H 0.191 0.809 43 H 0.093 0.907 44 H 0.104 0.896 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.521 -23.128 6.114 27.478 hybrid contribution 1.102 -0.860 -0.327 1.435 sum -12.419 -23.987 5.787 27.624 Atomic orbital electron populations 1.20062 0.87279 1.02861 1.02326 1.22258 0.96818 0.89944 1.01679 1.77377 0.87322 1.21634 1.24170 1.49161 1.06081 1.03677 1.50447 1.19792 0.77553 0.89374 0.99237 1.21251 1.13379 1.32021 0.91140 0.91686 1.24932 0.95625 0.94929 0.98233 1.69910 1.19117 1.32740 1.31011 0.86379 0.78055 0.78510 0.83552 1.19901 1.20917 1.19897 1.20879 0.95857 0.86449 0.99829 1.20345 0.93390 0.96995 1.03488 1.17604 0.90566 0.82085 1.25509 1.84693 1.76467 1.23932 1.31381 1.24422 0.74592 0.89958 0.82764 1.90770 1.46387 1.64914 1.36158 1.21258 1.04610 0.89534 0.98743 1.19818 1.03218 0.88193 0.95329 1.22234 0.93145 0.96641 0.96854 1.21462 1.05044 0.91937 1.11058 1.22537 0.89499 1.00571 0.96813 1.48521 1.20448 1.07425 1.39695 1.21856 0.89872 0.91271 1.00977 1.77330 1.21025 0.89031 1.24105 0.91176 0.90877 0.90998 0.92512 0.92701 0.92108 0.89766 0.91257 0.90297 0.87262 0.87676 0.88772 0.89083 0.83315 0.80944 0.90712 0.89555 0.89263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.06 10.44 36.01 0.38 -0.68 16 2 C 0.06 1.22 7.23 -82.28 -0.59 0.63 16 3 N -0.28 -6.73 12.57 33.73 0.42 -6.31 16 4 N -0.31 -7.61 3.60 -58.16 -0.21 -7.82 16 5 C 0.26 6.68 6.00 -5.19 -0.03 6.65 16 6 C -0.54 -14.88 9.39 -34.44 -0.32 -15.20 16 7 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 8 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 9 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 10 Si 0.91 21.08 29.54 -169.99 -5.02 16.06 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 14 C 0.10 2.23 6.95 -82.02 -0.57 1.66 16 15 C -0.08 -1.48 10.09 36.01 0.36 -1.12 16 16 C -0.10 -2.13 5.34 -39.79 -0.21 -2.35 16 17 O -0.25 -4.40 10.13 -24.24 -0.25 -4.64 16 18 C 0.44 6.74 7.91 36.01 0.28 7.03 16 19 O -0.50 -9.16 15.74 -19.06 -0.30 -9.46 16 20 C -0.10 -1.12 5.77 -27.88 -0.16 -1.28 16 21 C -0.03 -0.27 5.08 -27.89 -0.14 -0.42 16 22 C 0.08 0.81 6.49 -82.40 -0.53 0.28 16 23 C -0.27 -2.32 10.72 -40.01 -0.43 -2.75 16 24 C 0.05 0.37 11.49 -17.23 -0.20 0.17 16 25 N -0.38 -3.15 4.01 -68.15 -0.27 -3.43 16 26 C 0.10 0.41 11.47 59.85 0.69 1.10 16 27 N -0.29 -3.26 12.54 33.67 0.42 -2.84 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 32 H 0.06 1.41 7.06 -51.93 -0.37 1.04 16 33 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.08 1.40 7.08 -51.93 -0.37 1.03 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 40 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 41 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.17 0.57 8.06 -52.49 -0.42 0.14 16 43 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 44 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 LS Contribution 394.70 15.07 5.95 5.95 Total: -1.00 -35.02 394.70 -6.72 -41.74 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.62 Total: -0.40 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.58 Total: -4.56 kcal Atomic # 7 Polarization: -45.78 SS G_CDS: 1.10 Total: -44.68 kcal Atomic # 8 Polarization: -13.56 SS G_CDS: -0.55 Total: -14.11 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.02 -6.72 -41.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772392371.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.366 kcal (2) G-P(sol) polarization free energy of solvation -35.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds