Wall clock time and date at job start Tue Mar 31 2020 17:02:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.31885 * 119.93065 * 2 1 4 4 N 1.28276 * 122.62304 * 180.02562 * 3 2 1 5 5 C 1.32490 * 122.21990 * 359.97438 * 4 3 2 6 6 O 1.35448 * 120.25269 * 179.97438 * 5 4 3 7 7 C 1.40455 * 119.49210 * 359.97438 * 5 4 3 8 8 C 1.47825 * 121.17707 * 179.97438 * 7 5 4 9 9 O 1.21548 * 119.99986 * 83.59508 * 8 7 5 10 10 N 1.34782 * 120.00369 * 263.60082 * 8 7 5 11 11 C 1.47167 * 120.70703 * 5.18688 * 10 8 7 12 12 C 1.53884 * 108.02697 * 132.75377 * 11 10 8 13 13 H 1.09010 * 112.57795 * 182.22426 * 12 11 10 14 14 C 1.54131 * 107.71128 * 306.32061 * 12 11 10 15 15 C 1.54282 * 104.88608 * 89.41440 * 14 12 11 16 16 C 1.54548 * 104.84941 * 359.80739 * 15 14 12 17 17 H 1.09004 * 112.18273 * 146.40876 * 16 15 14 18 18 C 1.49243 * 120.77235 * 185.27284 * 10 8 7 19 19 N 1.48303 * 107.21067 * 58.36165 * 12 11 10 20 20 C 1.36940 * 128.07741 * 106.70023 * 19 12 11 21 21 H 1.07993 * 120.00003 * 164.95883 * 20 19 12 22 22 C 1.38815 * 119.99571 * 344.95531 * 20 19 12 23 23 N 1.31617 * 120.00288 * 351.01541 * 22 20 19 24 24 Si 1.86804 * 119.99703 * 171.01348 * 22 20 19 25 25 H 1.48506 * 109.47101 * 270.00279 * 24 22 20 26 26 H 1.48499 * 109.47272 * 29.99981 * 24 22 20 27 27 H 1.48498 * 109.47175 * 150.00247 * 24 22 20 28 28 C 1.38481 * 119.93537 * 180.27956 * 2 1 3 29 29 C 1.50707 * 121.05503 * 0.02562 * 28 2 1 30 30 H 1.08996 * 109.47215 * 89.99814 * 1 2 3 31 31 H 1.08998 * 109.47169 * 210.00355 * 1 2 3 32 32 H 1.09006 * 109.47078 * 329.99853 * 1 2 3 33 33 H 0.96700 * 113.99624 * 275.47956 * 6 5 4 34 34 H 1.09002 * 109.74940 * 13.11803 * 11 10 8 35 35 H 1.09002 * 109.75076 * 252.38806 * 11 10 8 36 36 H 1.08998 * 110.50787 * 330.47943 * 14 12 11 37 37 H 1.08996 * 110.27711 * 208.22989 * 14 12 11 38 38 H 1.09002 * 110.36658 * 240.96494 * 15 14 12 39 39 H 1.09002 * 110.36565 * 118.64759 * 15 14 12 40 40 H 1.08989 * 110.52192 * 107.81781 * 18 10 8 41 41 H 1.09000 * 109.74271 * 346.59467 * 18 10 8 42 42 H 0.97001 * 120.00143 * 179.97438 * 23 22 20 43 43 H 1.09000 * 109.46687 * 275.35351 * 29 28 2 44 44 H 1.09000 * 109.47108 * 35.35502 * 29 28 2 45 45 H 1.08996 * 109.46681 * 155.35756 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1650 1.1430 0.0000 4 7 3.4463 1.2032 -0.0005 5 6 4.2046 0.1168 -0.0005 6 8 5.5546 0.2268 -0.0016 7 6 3.5978 -1.1500 0.0005 8 6 4.4078 -2.3865 0.0000 9 8 4.8403 -2.8302 1.0457 10 7 4.6670 -3.0219 -1.1601 11 6 4.2492 -2.4397 -2.4455 12 6 5.4437 -2.5141 -3.4127 13 1 5.2261 -2.0649 -4.3818 14 6 6.6489 -1.8467 -2.7216 15 6 7.3423 -2.9863 -1.9464 16 6 6.4872 -4.2405 -2.2369 17 1 7.0896 -5.1478 -2.2821 18 6 5.3821 -4.3319 -1.1700 19 7 5.8250 -3.9425 -3.5301 20 6 5.6190 -4.7874 -4.5878 21 1 6.1536 -5.7242 -4.6427 22 6 4.7230 -4.4398 -5.5894 23 7 3.9430 -3.3903 -5.4396 24 14 4.6243 -5.4616 -7.1502 25 1 5.5745 -4.9221 -8.1559 26 1 4.9768 -6.8709 -6.8423 27 1 3.2434 -5.4040 -7.6931 28 6 2.1980 -1.2000 -0.0059 29 6 1.4671 -2.5180 -0.0129 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5139 33 1 5.9391 0.3424 -0.8813 34 1 3.9564 -1.3998 -2.3010 35 1 3.4108 -3.0061 -2.8512 36 1 6.3132 -1.0701 -2.0344 37 1 7.3263 -1.4272 -3.4654 38 1 7.3475 -2.7700 -0.8780 39 1 8.3599 -3.1284 -2.3104 40 1 4.6951 -5.1403 -1.4196 41 1 5.8281 -4.5153 -0.1925 42 1 3.3171 -3.1472 -6.1396 43 1 1.2067 -2.7944 1.0088 44 1 0.5582 -2.4263 -0.6074 45 1 2.1080 -3.2865 -0.4450 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029416716.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:26 Heat of formation + Delta-G solvation = 23.699096 kcal Electronic energy + Delta-G solvation = -30770.051391 eV Core-core repulsion = 26789.655467 eV Total energy + Delta-G solvation = -3980.395924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55683 -39.90211 -37.99119 -37.74819 -34.97843 -33.83599 -32.84361 -32.30205 -30.79013 -29.39350 -28.78531 -28.05783 -26.53832 -24.65515 -23.90190 -23.39799 -22.71024 -20.24203 -19.86750 -19.02931 -18.77929 -18.11277 -17.45474 -16.30502 -16.05225 -15.68081 -15.30589 -14.86990 -14.75189 -14.33618 -13.93979 -13.73981 -13.38606 -13.28009 -13.19178 -13.10073 -12.95331 -12.89527 -12.84629 -12.27962 -12.15546 -11.92743 -11.90235 -11.80161 -11.25443 -11.22714 -10.99792 -10.91649 -10.55257 -10.24823 -10.11528 -9.99615 -9.89338 -9.74829 -9.71084 -9.47051 -9.30839 -8.93812 -8.30031 -7.01954 -5.99124 -3.34288 0.48214 0.65989 2.66404 3.05150 3.23168 3.27004 3.33870 3.34632 3.42379 4.01531 4.28379 4.30635 4.36782 4.63399 4.79473 4.97738 5.11624 5.19818 5.25282 5.33661 5.38475 5.49789 5.53314 5.58914 5.64839 5.65045 5.71025 5.74654 5.77666 5.83573 5.95530 6.05446 6.12858 6.20789 6.36910 6.41993 6.46063 6.54623 6.70368 6.73638 7.04494 7.25648 7.28242 7.50996 7.76820 7.97380 8.32745 8.56391 8.91062 9.53357 10.28323 11.14221 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.004660 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.435691 B = 6007.200005 C = 6772.432433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.059 3.941 3 N -0.211 5.211 4 N -0.259 5.259 5 C 0.285 3.715 6 O -0.465 6.465 7 C -0.124 4.124 8 C 0.564 3.436 9 O -0.540 6.540 10 N -0.583 5.583 11 C 0.107 3.893 12 C 0.168 3.832 13 H 0.122 0.878 14 C -0.134 4.134 15 C -0.124 4.124 16 C 0.133 3.867 17 H 0.081 0.919 18 C 0.104 3.896 19 N -0.582 5.582 20 C -0.226 4.226 21 H 0.078 0.922 22 C -0.002 4.002 23 N -0.917 5.917 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.281 1.281 27 H -0.291 1.291 28 C -0.034 4.034 29 C -0.122 4.122 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.405 0.595 34 H 0.047 0.953 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.255 0.745 43 H 0.088 0.912 44 H 0.088 0.912 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.170 3.668 7.456 9.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.086 4.086 3 N -0.057 5.057 4 N -0.111 5.111 5 C 0.099 3.901 6 O -0.271 6.271 7 C -0.139 4.139 8 C 0.349 3.651 9 O -0.418 6.418 10 N -0.315 5.315 11 C -0.017 4.017 12 C 0.060 3.940 13 H 0.139 0.861 14 C -0.173 4.173 15 C -0.164 4.164 16 C 0.025 3.975 17 H 0.099 0.901 18 C -0.019 4.019 19 N -0.303 5.303 20 C -0.354 4.354 21 H 0.096 0.904 22 C -0.199 4.199 23 N -0.563 5.563 24 Si 0.744 3.256 25 H -0.215 1.215 26 H -0.206 1.206 27 H -0.217 1.217 28 C -0.046 4.046 29 C -0.179 4.179 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.265 0.735 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.056 4.900 8.310 10.465 hybrid contribution 0.137 -1.804 -1.317 2.238 sum -3.919 3.095 6.993 8.593 Atomic orbital electron populations 1.20702 0.86847 1.04182 1.03994 1.22722 0.99285 0.89289 0.97353 1.72780 1.00168 1.24335 1.08368 1.72996 0.99610 1.26478 1.11977 1.20805 0.86224 0.88285 0.94801 1.84787 1.13099 1.94361 1.34879 1.21345 0.94627 0.95771 1.02182 1.17669 0.80231 0.82773 0.84415 1.90769 1.52651 1.66831 1.31579 1.48749 1.55268 1.21700 1.05771 1.22626 1.01045 0.95794 0.82202 1.21784 0.88959 0.85981 0.97251 0.86059 1.22594 0.99508 0.96882 0.98311 1.22488 0.98654 0.96159 0.99059 1.21985 0.92201 0.96664 0.86650 0.90113 1.22834 0.95604 0.83124 1.00324 1.45145 1.66912 1.06545 1.11688 1.19033 1.18571 1.00458 0.97309 0.90392 1.24811 0.96803 0.98647 0.99604 1.69798 1.24803 1.28009 1.33665 0.86106 0.76954 0.79478 0.83109 1.21521 1.20610 1.21695 1.21077 0.91633 0.97876 0.93997 1.20960 1.01003 0.92282 1.03676 0.89426 0.89971 0.89734 0.73478 0.93441 0.89488 0.94099 0.92300 0.92293 0.92392 0.91134 0.90342 0.93444 0.89373 0.89336 0.90066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.45 36.00 0.34 -0.51 16 2 C 0.06 0.77 6.86 -82.48 -0.57 0.20 16 3 N -0.21 -3.26 11.40 33.56 0.38 -2.87 16 4 N -0.26 -4.32 11.52 30.73 0.35 -3.97 16 5 C 0.28 4.69 7.77 -16.43 -0.13 4.56 16 6 O -0.46 -7.14 13.02 -18.04 -0.23 -7.38 16 7 C -0.12 -2.03 3.76 -104.45 -0.39 -2.42 16 8 C 0.56 10.14 5.46 -12.34 -0.07 10.07 16 9 O -0.54 -11.20 16.61 5.32 0.09 -11.11 16 10 N -0.58 -10.30 2.17 -170.93 -0.37 -10.67 16 11 C 0.11 1.99 5.66 -3.22 -0.02 1.97 16 12 C 0.17 3.40 3.11 -65.89 -0.20 3.19 16 13 H 0.12 2.82 6.35 -51.92 -0.33 2.49 16 14 C -0.13 -2.28 6.16 -25.47 -0.16 -2.44 16 15 C -0.12 -2.09 6.19 -25.25 -0.16 -2.25 16 16 C 0.13 2.46 4.27 -65.66 -0.28 2.18 16 17 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 18 C 0.10 1.86 6.07 -2.06 -0.01 1.85 16 19 N -0.58 -12.71 2.80 -152.84 -0.43 -13.14 16 20 C -0.23 -5.52 10.37 -15.06 -0.16 -5.67 16 21 H 0.08 1.88 7.84 -52.49 -0.41 1.47 16 22 C 0.00 -0.04 5.42 -17.43 -0.09 -0.14 16 23 N -0.92 -23.22 10.42 55.49 0.58 -22.65 16 24 Si 0.91 20.13 29.56 -169.99 -5.03 15.11 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 28 C -0.03 -0.48 5.96 -103.84 -0.62 -1.10 16 29 C -0.12 -1.40 8.85 36.01 0.32 -1.08 16 30 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 0.54 6.90 -51.93 -0.36 0.19 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.40 4.70 7.07 45.56 0.32 5.03 16 34 H 0.05 0.83 6.45 -51.93 -0.34 0.50 16 35 H 0.09 1.86 7.84 -51.93 -0.41 1.45 16 36 H 0.04 0.62 5.75 -51.93 -0.30 0.32 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.99 7.86 -51.93 -0.41 0.58 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.08 1.36 7.14 -51.93 -0.37 0.99 16 42 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 43 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.09 0.79 7.12 -51.93 -0.37 0.42 16 45 H 0.08 1.10 6.97 -51.93 -0.36 0.74 16 LS Contribution 356.78 15.07 5.38 5.38 Total: -1.00 -29.79 356.78 -6.90 -36.68 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -5.42 Total: 6.20 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -2.19 Total: 8.42 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.52 Total: -53.29 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.15 Total: -18.49 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.79 -6.90 -36.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029416716.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.383 kcal (2) G-P(sol) polarization free energy of solvation -29.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds