Wall clock time and date at job start Tue Mar 31 2020 17:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46818 * 2 1 4 4 C 1.52999 * 109.47075 * 239.99623 * 2 1 3 5 5 S 1.81405 * 109.46872 * 119.99810 * 2 1 3 6 6 O 1.42099 * 109.46665 * 176.39155 * 5 2 1 7 7 C 1.81399 * 103.00134 * 60.00055 * 5 2 1 8 8 C 1.53004 * 109.46774 * 179.97438 * 7 5 2 9 9 N 1.46506 * 109.46572 * 179.97438 * 8 7 5 10 10 C 1.34773 * 119.99502 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00520 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99861 * 180.02562 * 10 9 8 13 13 C 1.47025 * 125.64960 * 0.02616 * 12 10 9 14 14 C 1.54326 * 107.27378 * 181.02381 * 13 12 10 15 15 C 1.55153 * 102.94010 * 22.19171 * 14 13 12 16 16 O 1.42895 * 111.00729 * 82.57617 * 15 14 13 17 17 C 1.50707 * 111.00275 * 206.38851 * 15 14 13 18 18 H 1.08000 * 119.99443 * 359.97438 * 17 15 14 19 19 C 1.37873 * 120.00116 * 180.02562 * 17 15 14 20 20 N 1.31517 * 120.00286 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00079 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47008 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47321 * 119.99599 * 21 19 17 24 24 H 1.48502 * 109.46857 * 239.99847 * 21 19 17 25 25 C 1.47424 * 125.65218 * 179.71749 * 12 10 9 26 26 H 1.09003 * 109.47642 * 299.99925 * 1 2 3 27 27 H 1.08998 * 109.47327 * 60.00479 * 1 2 3 28 28 H 1.09001 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47060 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47231 * 299.99098 * 3 2 1 31 31 H 1.08994 * 109.47695 * 59.99875 * 3 2 1 32 32 H 1.09001 * 109.46994 * 300.00080 * 4 2 1 33 33 H 1.08998 * 109.47127 * 59.99775 * 4 2 1 34 34 H 1.09000 * 109.47132 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47032 * 299.99763 * 7 5 2 36 36 H 1.08997 * 109.46935 * 59.99597 * 7 5 2 37 37 H 1.08993 * 109.47118 * 299.99896 * 8 7 5 38 38 H 1.08994 * 109.47024 * 60.00435 * 8 7 5 39 39 H 0.97000 * 120.00344 * 0.02562 * 9 8 7 40 40 H 1.09004 * 109.88069 * 300.44011 * 13 12 10 41 41 H 1.08997 * 109.88367 * 61.59975 * 13 12 10 42 42 H 1.08993 * 110.71968 * 140.55122 * 14 13 12 43 43 H 1.09000 * 110.71929 * 263.65158 * 14 13 12 44 44 H 0.96701 * 114.00173 * 180.02562 * 16 15 14 45 45 H 0.96994 * 120.00601 * 180.02562 * 20 19 17 46 46 H 1.09000 * 110.36334 * 274.74791 * 25 12 10 47 47 H 1.09006 * 110.36742 * 37.06251 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1346 -0.8551 1.4812 6 8 3.5531 -0.9286 1.4398 7 6 1.4374 -2.5204 1.3042 8 6 1.8634 -3.3808 2.4955 9 7 1.2998 -4.7256 2.3528 10 6 1.5444 -5.6617 3.2910 11 8 2.2324 -5.3901 4.2560 12 7 1.0264 -6.8990 3.1596 13 6 0.1820 -7.3608 2.0481 14 6 -0.1926 -8.8297 2.3369 15 6 -0.0061 -8.9403 3.8732 16 8 -1.1580 -8.4545 4.5654 17 6 0.3062 -10.3577 4.2788 18 1 0.3717 -11.1320 3.5287 19 6 0.5074 -10.6662 5.6075 20 7 0.4271 -9.7234 6.5209 21 14 0.8952 -12.4230 6.1101 22 1 0.9294 -13.2871 4.9030 23 1 2.2167 -12.4641 6.7865 24 1 -0.1526 -12.9144 7.0406 25 6 1.2179 -8.0154 4.1032 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6766 -0.2076 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 0.3497 -2.4573 1.2716 36 1 1.8030 -2.9711 0.3816 37 1 2.9510 -3.4438 2.5277 38 1 1.4980 -2.9302 3.4182 39 1 0.7512 -4.9424 1.5828 40 1 -0.7206 -6.7524 1.9908 41 1 0.7349 -7.2965 1.1110 42 1 -1.2283 -9.0253 2.0592 43 1 0.4804 -9.5093 1.8141 44 1 -1.0877 -8.5031 5.5286 45 1 0.5689 -9.9403 7.4556 46 1 2.1440 -8.5454 3.8808 47 1 1.2275 -7.6475 5.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649845095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:39 Heat of formation + Delta-G solvation = -122.771773 kcal Electronic energy + Delta-G solvation = -26913.827042 eV Core-core repulsion = 23030.230865 eV Total energy + Delta-G solvation = -3883.596177 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.63372 -37.44712 -36.65878 -36.00497 -34.99858 -34.23676 -32.13858 -30.99100 -29.65059 -27.88531 -27.78014 -27.60548 -25.12758 -23.34632 -22.32652 -21.14036 -19.68038 -19.56350 -17.68160 -17.39370 -17.05722 -16.53964 -15.83822 -15.58639 -15.20510 -14.98625 -14.83954 -14.68888 -14.36218 -14.29386 -13.93694 -13.55181 -13.10766 -12.98103 -12.85239 -12.76087 -12.68595 -12.32950 -12.23124 -12.21974 -11.99489 -11.66230 -11.60551 -11.47640 -11.42481 -11.32548 -11.05493 -10.78768 -10.59059 -10.46714 -10.24965 -10.17286 -9.61103 -9.39118 -8.85477 -8.67986 -8.50647 -8.35403 -7.67278 -6.28414 -4.37871 1.10286 2.23086 3.16352 3.21832 3.29194 3.32365 3.48958 3.75135 4.23975 4.25943 4.30675 4.51924 4.53554 4.66201 4.69722 4.98709 5.09157 5.12041 5.22400 5.26064 5.33714 5.35756 5.40805 5.43434 5.62060 5.63263 5.66544 5.71295 5.72856 5.77824 5.83122 6.02471 6.11771 6.50895 6.70620 6.71808 6.88022 6.96599 7.23778 7.33570 7.63213 7.75466 8.01165 8.53446 8.66489 9.13320 9.31964 9.47264 10.78907 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031672 B = 0.002187 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.847925 B =12798.739612 C =13142.263353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.388 4.388 3 C -0.125 4.125 4 C -0.145 4.145 5 S 1.263 4.737 6 O -0.836 6.836 7 C -0.466 4.466 8 C 0.162 3.838 9 N -0.749 5.749 10 C 0.715 3.285 11 O -0.596 6.596 12 N -0.627 5.627 13 C 0.106 3.894 14 C -0.117 4.117 15 C 0.250 3.750 16 O -0.584 6.584 17 C -0.537 4.537 18 H 0.067 0.933 19 C 0.070 3.930 20 N -0.894 5.894 21 Si 0.904 3.096 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.111 3.889 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.393 0.607 40 H 0.056 0.944 41 H 0.048 0.952 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.386 0.614 45 H 0.271 0.729 46 H 0.057 0.943 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 19.887 -13.025 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.486 4.486 3 C -0.183 4.183 4 C -0.202 4.202 5 S 1.459 4.541 6 O -0.831 6.831 7 C -0.602 4.602 8 C 0.037 3.963 9 N -0.407 5.407 10 C 0.417 3.583 11 O -0.474 6.474 12 N -0.364 5.364 13 C -0.018 4.018 14 C -0.155 4.155 15 C 0.209 3.791 16 O -0.394 6.394 17 C -0.576 4.576 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.533 5.533 21 Si 0.732 3.268 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.011 4.011 26 H 0.091 0.909 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.227 0.773 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.239 0.761 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.407 20.644 -11.986 23.992 hybrid contribution 0.869 -2.123 -1.588 2.790 sum -1.538 18.521 -13.575 23.015 Atomic orbital electron populations 1.21603 0.90554 1.02727 1.03305 1.27187 1.03491 1.05010 1.12920 1.21532 1.01301 0.92394 1.03057 1.21930 1.01441 0.99825 0.97042 1.70819 0.91700 0.90102 1.01453 1.93130 1.25961 1.83208 1.80803 1.28061 1.10492 1.17511 1.04167 1.20542 0.98724 0.81356 0.95707 1.45115 1.57732 1.11278 1.26604 1.15532 0.80415 0.79679 0.82696 1.90891 1.44141 1.80021 1.32392 1.47898 1.52204 1.09959 1.26313 1.21921 0.93434 0.97474 0.88943 1.22596 1.01472 0.92945 0.98436 1.19627 0.81925 0.90789 0.86804 1.86050 1.41353 1.86887 1.25138 1.21532 1.49349 0.93598 0.93074 0.91442 1.25089 0.93635 0.98096 0.96472 1.69573 1.49254 1.32619 1.01852 0.86336 0.78058 0.83783 0.78637 1.19606 1.20745 1.20740 1.23213 1.00285 0.84672 0.92942 0.90898 0.91842 0.91885 0.92181 0.91568 0.91311 0.92320 0.91829 0.92127 0.85662 0.88728 0.91529 0.90696 0.77291 0.92613 0.93336 0.90768 0.90529 0.76143 0.91899 0.92500 0.90022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.47 8.32 37.16 0.31 -0.16 16 2 C -0.39 -2.36 0.94 -90.62 -0.08 -2.44 16 3 C -0.12 -0.71 8.48 37.15 0.32 -0.40 16 4 C -0.14 -1.09 8.29 37.16 0.31 -0.78 16 5 S 1.26 9.75 12.09 -107.50 -1.30 8.45 16 6 O -0.84 -11.93 18.10 -35.23 -0.64 -12.57 16 7 C -0.47 -3.82 5.15 37.16 0.19 -3.63 16 8 C 0.16 2.09 5.68 -4.04 -0.02 2.06 16 9 N -0.75 -11.36 5.52 -65.23 -0.36 -11.72 16 10 C 0.72 14.84 8.49 -86.92 -0.74 14.11 16 11 O -0.60 -14.76 16.60 5.29 0.09 -14.67 16 12 N -0.63 -13.15 3.32 -176.10 -0.59 -13.73 16 13 C 0.11 1.83 6.15 -3.06 -0.02 1.81 16 14 C -0.12 -2.28 6.12 -24.90 -0.15 -2.44 16 15 C 0.25 6.03 0.89 -89.50 -0.08 5.95 16 16 O -0.58 -14.92 13.19 -35.23 -0.46 -15.39 16 17 C -0.54 -13.91 8.25 -34.44 -0.28 -14.19 16 18 H 0.07 1.71 7.77 -52.49 -0.41 1.30 16 19 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 20 N -0.89 -23.86 10.72 55.43 0.59 -23.26 16 21 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C 0.11 2.71 5.64 -2.41 -0.01 2.69 16 26 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.21 6.68 -51.93 -0.35 -0.14 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.41 6.68 -51.93 -0.35 0.07 16 33 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.13 0.65 6.99 -51.92 -0.36 0.29 16 36 H 0.09 0.82 6.99 -51.93 -0.36 0.46 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.39 4.87 7.46 -40.82 -0.30 4.56 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 44 H 0.39 10.27 6.93 45.56 0.32 10.58 16 45 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.06 1.42 8.04 -51.93 -0.42 1.01 16 47 H 0.08 2.25 7.64 -51.93 -0.40 1.85 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -35.67 387.30 -9.47 -45.14 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -7.25 Total: 12.31 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -0.37 Total: 4.32 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.35 Total: -48.72 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -1.01 Total: -42.63 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 9.75 SS G_CDS: -1.30 Total: 8.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.67 -9.47 -45.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649845095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.635 kcal (2) G-P(sol) polarization free energy of solvation -35.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds