Wall clock time and date at job start Tue Mar 31 2020 17:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.46818 * 2 1 4 4 C 1.52999 * 109.47075 * 239.99623 * 2 1 3 5 5 S 1.81405 * 109.46872 * 119.99810 * 2 1 3 6 6 O 1.42099 * 109.46665 * 176.39155 * 5 2 1 7 7 C 1.81399 * 103.00134 * 60.00055 * 5 2 1 8 8 C 1.53004 * 109.46774 * 179.97438 * 7 5 2 9 9 N 1.46506 * 109.46572 * 179.97438 * 8 7 5 10 10 C 1.34773 * 119.99502 * 179.97438 * 9 8 7 11 11 O 1.21583 * 120.00520 * 0.02562 * 10 9 8 12 12 N 1.34774 * 119.99861 * 180.02562 * 10 9 8 13 13 C 1.47025 * 125.64960 * 0.02616 * 12 10 9 14 14 C 1.54326 * 107.27378 * 181.02381 * 13 12 10 15 15 C 1.55153 * 102.94010 * 22.19171 * 14 13 12 16 16 O 1.42895 * 111.00729 * 82.57617 * 15 14 13 17 17 C 1.50707 * 111.00275 * 206.38851 * 15 14 13 18 18 H 1.08000 * 119.99443 * 359.97438 * 17 15 14 19 19 C 1.37873 * 120.00116 * 180.02562 * 17 15 14 20 20 N 1.31517 * 120.00286 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00079 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47008 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47321 * 119.99599 * 21 19 17 24 24 H 1.48502 * 109.46857 * 239.99847 * 21 19 17 25 25 C 1.47424 * 125.65218 * 179.71749 * 12 10 9 26 26 H 1.09003 * 109.47642 * 299.99925 * 1 2 3 27 27 H 1.08998 * 109.47327 * 60.00479 * 1 2 3 28 28 H 1.09001 * 109.47275 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47060 * 179.97438 * 3 2 1 30 30 H 1.09004 * 109.47231 * 299.99098 * 3 2 1 31 31 H 1.08994 * 109.47695 * 59.99875 * 3 2 1 32 32 H 1.09001 * 109.46994 * 300.00080 * 4 2 1 33 33 H 1.08998 * 109.47127 * 59.99775 * 4 2 1 34 34 H 1.09000 * 109.47132 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.47032 * 299.99763 * 7 5 2 36 36 H 1.08997 * 109.46935 * 59.99597 * 7 5 2 37 37 H 1.08993 * 109.47118 * 299.99896 * 8 7 5 38 38 H 1.08994 * 109.47024 * 60.00435 * 8 7 5 39 39 H 0.97000 * 120.00344 * 0.02562 * 9 8 7 40 40 H 1.09004 * 109.88069 * 300.44011 * 13 12 10 41 41 H 1.08997 * 109.88367 * 61.59975 * 13 12 10 42 42 H 1.08993 * 110.71968 * 140.55122 * 14 13 12 43 43 H 1.09000 * 110.71929 * 263.65158 * 14 13 12 44 44 H 0.96701 * 114.00173 * 180.02562 * 16 15 14 45 45 H 0.96994 * 120.00601 * 180.02562 * 20 19 17 46 46 H 1.09000 * 110.36334 * 274.74791 * 25 12 10 47 47 H 1.09006 * 110.36742 * 37.06251 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 16 2.1346 -0.8551 1.4812 6 8 3.5531 -0.9286 1.4398 7 6 1.4374 -2.5204 1.3042 8 6 1.8634 -3.3808 2.4955 9 7 1.2998 -4.7256 2.3528 10 6 1.5444 -5.6617 3.2910 11 8 2.2324 -5.3901 4.2560 12 7 1.0264 -6.8990 3.1596 13 6 0.1820 -7.3608 2.0481 14 6 -0.1926 -8.8297 2.3369 15 6 -0.0061 -8.9403 3.8732 16 8 -1.1580 -8.4545 4.5654 17 6 0.3062 -10.3577 4.2788 18 1 0.3717 -11.1320 3.5287 19 6 0.5074 -10.6662 5.6075 20 7 0.4271 -9.7234 6.5209 21 14 0.8952 -12.4230 6.1101 22 1 0.9294 -13.2871 4.9030 23 1 2.2167 -12.4641 6.7865 24 1 -0.1526 -12.9144 7.0406 25 6 1.2179 -8.0154 4.1032 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1299 1.4425 0.0005 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9563 0.8899 32 1 1.6766 -1.7490 -1.2491 33 1 1.6766 -0.2076 -2.1392 34 1 3.1300 -0.7217 -1.2490 35 1 0.3497 -2.4573 1.2716 36 1 1.8030 -2.9711 0.3816 37 1 2.9510 -3.4438 2.5277 38 1 1.4980 -2.9302 3.4182 39 1 0.7512 -4.9424 1.5828 40 1 -0.7206 -6.7524 1.9908 41 1 0.7349 -7.2965 1.1110 42 1 -1.2283 -9.0253 2.0592 43 1 0.4804 -9.5093 1.8141 44 1 -1.0877 -8.5031 5.5286 45 1 0.5689 -9.9403 7.4556 46 1 2.1440 -8.5454 3.8808 47 1 1.2275 -7.6475 5.1292 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649845095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:37 Heat of formation + Delta-G solvation = -151.783596 kcal Electronic energy + Delta-G solvation = -26915.085089 eV Core-core repulsion = 23030.230865 eV Total energy + Delta-G solvation = -3884.854224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.24739 -39.15417 -37.14973 -36.90313 -36.33102 -36.06429 -34.14003 -32.36901 -31.04232 -29.52231 -28.36455 -28.07750 -26.94149 -24.64408 -23.67243 -21.71009 -21.43990 -21.11106 -19.32140 -18.87428 -18.14452 -17.50996 -17.09705 -17.01830 -16.59557 -16.30484 -16.10259 -15.70602 -15.50002 -15.29699 -14.94899 -14.79285 -14.67270 -14.55923 -13.99196 -13.79741 -13.56808 -13.48339 -13.30060 -13.17381 -13.05005 -12.86237 -12.79597 -12.71368 -12.50830 -12.34437 -12.29288 -12.18087 -12.09367 -11.92201 -11.85469 -11.44373 -11.23431 -10.88256 -10.64675 -10.34457 -10.22560 -9.33195 -9.19984 -8.25264 -6.41985 0.42617 1.41192 1.44695 1.55353 1.59937 1.76916 2.12677 2.38521 2.77604 3.00985 3.15592 3.66666 3.75309 3.80714 3.81313 3.95646 4.12818 4.18764 4.19754 4.34971 4.42792 4.57686 4.62595 4.64027 4.71073 4.76065 4.83788 4.85634 4.88076 5.02355 5.05523 5.06248 5.09975 5.17399 5.27584 5.30213 5.38487 5.43834 5.46255 5.51486 5.77876 6.03006 6.17242 6.65519 7.05478 7.30907 7.40787 7.55060 8.80569 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031672 B = 0.002187 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.847925 B =12798.739612 C =13142.263353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.375 4.375 3 C -0.131 4.131 4 C -0.150 4.150 5 S 1.293 4.707 6 O -0.909 6.909 7 C -0.454 4.454 8 C 0.155 3.845 9 N -0.725 5.725 10 C 0.707 3.293 11 O -0.646 6.646 12 N -0.632 5.632 13 C 0.107 3.893 14 C -0.111 4.111 15 C 0.234 3.766 16 O -0.588 6.588 17 C -0.554 4.554 18 H 0.070 0.930 19 C 0.024 3.976 20 N -0.918 5.918 21 Si 0.965 3.035 22 H -0.263 1.263 23 H -0.285 1.285 24 H -0.279 1.279 25 C 0.123 3.877 26 H 0.097 0.903 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.168 0.832 36 H 0.094 0.906 37 H 0.034 0.966 38 H 0.083 0.917 39 H 0.412 0.588 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.377 0.623 45 H 0.271 0.729 46 H 0.039 0.961 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.725 20.525 -15.367 26.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.475 4.475 3 C -0.189 4.189 4 C -0.208 4.208 5 S 1.493 4.507 6 O -0.905 6.905 7 C -0.591 4.591 8 C 0.030 3.970 9 N -0.384 5.384 10 C 0.408 3.592 11 O -0.529 6.529 12 N -0.369 5.369 13 C -0.015 4.015 14 C -0.149 4.149 15 C 0.193 3.807 16 O -0.397 6.397 17 C -0.593 4.593 18 H 0.089 0.911 19 C -0.177 4.177 20 N -0.558 5.558 21 Si 0.791 3.209 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.204 1.204 25 C -0.001 4.001 26 H 0.116 0.884 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.049 0.951 35 H 0.186 0.814 36 H 0.113 0.887 37 H 0.052 0.948 38 H 0.101 0.899 39 H 0.249 0.751 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.228 0.772 45 H 0.080 0.920 46 H 0.058 0.942 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -4.791 21.295 -14.393 26.146 hybrid contribution 1.572 -2.248 -0.929 2.896 sum -3.219 19.047 -15.322 24.656 Atomic orbital electron populations 1.21726 0.87794 1.04084 1.04950 1.27084 1.05449 1.04452 1.10495 1.21629 0.99807 0.92561 1.04907 1.22001 0.99659 1.00743 0.98411 1.69989 0.89142 0.89278 1.02310 1.93028 1.29939 1.84353 1.83171 1.27989 1.13066 1.16222 1.01793 1.20698 0.96958 0.80875 0.98501 1.44925 1.56899 1.10913 1.25617 1.15810 0.80067 0.80232 0.83064 1.90852 1.46312 1.80941 1.34776 1.47841 1.52867 1.09477 1.26695 1.22137 0.94340 0.96133 0.88900 1.22597 1.02750 0.94909 0.94642 1.19861 0.81331 0.89843 0.89673 1.86037 1.42110 1.87038 1.24520 1.21873 1.49311 0.94688 0.93394 0.91136 1.25853 0.93595 1.01582 0.96659 1.69687 1.49878 1.34219 1.01984 0.85390 0.77490 0.79663 0.78374 1.18706 1.21075 1.20418 1.22773 0.99936 0.85808 0.91562 0.88413 0.91193 0.90708 0.94741 0.90320 0.88939 0.91608 0.90604 0.95071 0.81381 0.88679 0.94773 0.89857 0.75127 0.90267 0.89488 0.89404 0.89479 0.77205 0.91999 0.94233 0.94292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.40 8.32 71.98 0.60 0.20 16 2 C -0.37 -3.66 0.94 -10.80 -0.01 -3.67 16 3 C -0.13 -1.27 8.48 71.98 0.61 -0.66 16 4 C -0.15 -2.02 8.29 71.98 0.60 -1.42 16 5 S 1.29 18.52 12.09 -56.49 -0.68 17.84 16 6 O -0.91 -27.03 18.10 -148.98 -2.70 -29.72 16 7 C -0.45 -6.26 5.15 71.98 0.37 -5.89 16 8 C 0.15 3.83 5.68 86.38 0.49 4.32 16 9 N -0.73 -20.65 5.52 -478.54 -2.64 -23.29 16 10 C 0.71 29.21 8.49 179.06 1.52 30.73 16 11 O -0.65 -33.13 16.60 -3.98 -0.07 -33.19 16 12 N -0.63 -26.11 3.32 -829.31 -2.76 -28.87 16 13 C 0.11 3.36 6.15 86.73 0.53 3.89 16 14 C -0.11 -4.10 6.12 31.78 0.19 -3.90 16 15 C 0.23 11.27 0.89 -10.07 -0.01 11.26 16 16 O -0.59 -30.21 13.19 -148.98 -1.97 -32.17 16 17 C -0.55 -28.74 8.25 25.60 0.21 -28.53 16 18 H 0.07 3.52 7.77 -2.91 -0.02 3.50 16 19 C 0.02 1.23 5.30 84.65 0.45 1.68 16 20 N -0.92 -50.36 10.72 21.45 0.23 -50.13 16 21 Si 0.97 41.88 29.54 68.60 2.03 43.91 16 22 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 23 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 C 0.12 6.16 5.64 86.93 0.49 6.65 16 26 H 0.10 -0.12 8.14 -2.39 -0.02 -0.14 16 27 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 28 H 0.07 0.09 6.68 -2.39 -0.02 0.08 16 29 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 0.77 6.68 -2.39 -0.02 0.75 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.03 0.59 8.14 -2.39 -0.02 0.58 16 35 H 0.17 0.89 6.99 -2.39 -0.02 0.87 16 36 H 0.09 1.39 6.99 -2.39 -0.02 1.37 16 37 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.41 8.64 7.46 -92.71 -0.69 7.95 16 40 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.09 3.00 8.02 -2.39 -0.02 2.98 16 44 H 0.38 20.64 6.93 -74.06 -0.51 20.12 16 45 H 0.27 14.19 8.31 -92.71 -0.77 13.42 16 46 H 0.04 2.06 8.04 -2.39 -0.02 2.04 16 47 H 0.04 2.25 7.64 -2.38 -0.02 2.23 16 Total: -1.00 -82.85 387.30 -2.74 -85.59 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -0.23 Total: 35.36 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 6.05 Total: 14.67 kcal Atomic # 7 Polarization: -97.11 SS G_CDS: -5.17 Total: -102.28 kcal Atomic # 8 Polarization: -90.36 SS G_CDS: -4.73 Total: -95.08 kcal Atomic # 14 Polarization: 41.88 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 18.52 SS G_CDS: -0.68 Total: 17.84 kcal Total: -82.85 -2.74 -85.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649845095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.191 kcal (2) G-P(sol) polarization free energy of solvation -82.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds