Wall clock time and date at job start Tue Mar 31 2020 16:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.47390 * 2 1 4 4 N 1.46497 * 109.47210 * 173.14635 * 3 2 1 5 5 C 1.34774 * 120.00287 * 261.65670 * 4 3 2 6 6 O 1.21276 * 119.99946 * 181.65867 * 5 4 3 7 7 C 1.50701 * 120.00083 * 1.65513 * 5 4 3 8 8 H 1.09004 * 109.46817 * 310.13093 * 7 5 4 9 9 C 1.52995 * 109.47282 * 70.13297 * 7 5 4 10 10 N 1.46498 * 109.47194 * 190.13743 * 7 5 4 11 11 C 1.46503 * 119.99755 * 299.99787 * 10 7 5 12 12 C 1.36939 * 120.00132 * 119.99996 * 10 7 5 13 13 H 1.08001 * 120.00027 * 11.40287 * 12 10 7 14 14 C 1.38811 * 120.00078 * 191.40600 * 12 10 7 15 15 N 1.31626 * 120.00038 * 25.51896 * 14 12 10 16 16 Si 1.86795 * 120.00317 * 205.52527 * 14 12 10 17 17 H 1.48494 * 109.47366 * 94.99053 * 16 14 12 18 18 H 1.48497 * 109.47179 * 214.99541 * 16 14 12 19 19 H 1.48503 * 109.46856 * 334.99189 * 16 14 12 20 20 C 1.46501 * 119.99761 * 81.65708 * 4 3 2 21 21 H 1.08998 * 109.64089 * 0.42115 * 20 4 3 22 22 C 1.53871 * 109.64887 * 120.72529 * 20 4 3 23 23 C 1.55047 * 106.62303 * 167.03347 * 22 20 4 24 24 S 1.83281 * 102.56727 * 317.56332 * 23 22 20 25 25 O 1.42105 * 109.35767 * 269.81649 * 24 23 22 26 26 O 1.42096 * 109.47707 * 136.65099 * 24 23 22 27 27 C 1.54175 * 109.64485 * 239.99887 * 20 4 3 28 28 H 1.08998 * 109.46877 * 59.99822 * 1 2 3 29 29 H 1.09000 * 109.47163 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46856 * 299.99764 * 1 2 3 31 31 H 1.09007 * 109.46781 * 240.00007 * 2 1 3 32 32 H 1.08998 * 109.46975 * 120.00725 * 2 1 3 33 33 H 1.08996 * 109.47423 * 293.15263 * 3 2 1 34 34 H 1.09007 * 109.46614 * 53.14911 * 3 2 1 35 35 H 1.08992 * 109.47288 * 157.48802 * 9 7 5 36 36 H 1.09006 * 109.47271 * 277.49178 * 9 7 5 37 37 H 1.09007 * 109.46797 * 37.48818 * 9 7 5 38 38 H 1.08995 * 109.47141 * 94.74996 * 11 10 7 39 39 H 1.09001 * 109.46619 * 214.74162 * 11 10 7 40 40 H 1.08995 * 109.47128 * 334.74576 * 11 10 7 41 41 H 0.96997 * 119.99915 * 179.97438 * 15 14 12 42 42 H 1.09002 * 110.02557 * 286.32626 * 22 20 4 43 43 H 1.09001 * 110.02869 * 47.74002 * 22 20 4 44 44 H 1.09006 * 110.78569 * 199.29803 * 23 22 20 45 45 H 1.08993 * 110.79181 * 75.83794 * 23 22 20 46 46 H 1.08998 * 110.31462 * 331.14077 * 27 20 4 47 47 H 1.08999 * 110.31462 * 93.23214 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.4958 1.4457 0.1648 5 6 4.0359 1.6623 1.3805 6 8 5.2411 1.6949 1.5114 7 6 3.1422 1.8642 2.5770 8 1 2.3873 2.6151 2.3440 9 6 2.4558 0.5431 2.9295 10 7 3.9454 2.3163 3.7157 11 6 5.0332 1.4769 4.2240 12 6 3.6794 3.5234 4.3049 13 1 2.7732 4.0568 4.0582 14 6 4.5744 4.0617 5.2193 15 7 5.8471 3.7299 5.1680 16 14 3.9727 5.2566 6.5229 17 1 3.6836 4.5165 7.7773 18 1 5.0203 6.2771 6.7804 19 1 2.7356 5.9264 6.0471 20 6 4.3644 1.2134 -0.9918 21 1 3.7554 1.0661 -1.8837 22 6 5.2904 2.4254 -1.1952 23 6 6.3852 1.9834 -2.2001 24 16 6.8066 0.2983 -1.6152 25 8 7.8613 0.3791 -0.6663 26 8 6.9232 -0.5748 -2.7302 27 6 5.2329 -0.0364 -0.7452 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.7803 1.9197 -0.9448 34 1 1.5801 1.9904 0.8224 35 1 2.1452 0.5624 3.9741 36 1 1.5815 0.4067 2.2929 37 1 3.1517 -0.2811 2.7725 38 1 5.9736 1.7847 3.7670 39 1 5.1020 1.5874 5.3062 40 1 4.8333 0.4342 3.9771 41 1 6.4726 4.1063 5.8067 42 1 4.7248 3.2628 -1.6037 43 1 5.7467 2.7097 -0.2470 44 1 7.2524 2.6413 -2.1416 45 1 5.9892 1.9529 -3.2151 46 1 5.4110 -0.1688 0.3220 47 1 4.7497 -0.9209 -1.1603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:24 Heat of formation + Delta-G solvation = -92.218733 kcal Electronic energy + Delta-G solvation = -29103.009357 eV Core-core repulsion = 25220.738060 eV Total energy + Delta-G solvation = -3882.271298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.44049 -38.15930 -38.07635 -37.10095 -37.06787 -36.11442 -33.80799 -33.12247 -31.11439 -30.36841 -28.02693 -26.97396 -26.37095 -25.48001 -23.73546 -22.47474 -22.15600 -19.85582 -19.45994 -18.94112 -18.16126 -17.83019 -17.23881 -17.14055 -16.70356 -16.45721 -16.03146 -15.75114 -15.39876 -15.18105 -15.11845 -14.82196 -14.58587 -14.14834 -13.87803 -13.59697 -13.39170 -13.35440 -13.25303 -13.19975 -13.10762 -12.97115 -12.89264 -12.74468 -12.55046 -12.51790 -12.34066 -12.30035 -12.20619 -12.00440 -11.89821 -11.82208 -11.66017 -11.32278 -11.23080 -10.70777 -10.24799 -9.58697 -8.87828 -7.83600 -5.19409 -0.92514 1.47273 1.49578 1.53716 1.58950 1.85919 2.09023 2.53236 2.63643 3.05966 3.27544 3.40397 3.57010 3.63227 3.69486 3.90448 4.00114 4.05663 4.14050 4.27714 4.32037 4.44238 4.50441 4.56520 4.61704 4.71381 4.73086 4.77685 4.87040 4.91091 4.97880 5.02146 5.09133 5.12525 5.26878 5.34109 5.36097 5.44364 5.62799 5.66451 5.76451 5.82291 6.24161 6.50275 7.10164 7.43805 7.87532 8.29427 9.21388 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.004489 C = 0.003614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.610443 B = 6236.164170 C = 7745.277662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.150 4.150 3 C 0.099 3.901 4 N -0.603 5.603 5 C 0.488 3.512 6 O -0.556 6.556 7 C 0.149 3.851 8 H 0.098 0.902 9 C -0.149 4.149 10 N -0.590 5.590 11 C 0.194 3.806 12 C -0.267 4.267 13 H 0.087 0.913 14 C -0.056 4.056 15 N -0.933 5.933 16 Si 0.966 3.034 17 H -0.289 1.289 18 H -0.303 1.303 19 H -0.259 1.259 20 C 0.158 3.842 21 H 0.159 0.841 22 C -0.147 4.147 23 C -0.552 4.552 24 S 2.384 3.616 25 O -0.992 6.992 26 O -0.969 6.969 27 C -0.598 4.598 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.061 0.939 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.040 0.960 38 H -0.004 1.004 39 H 0.015 0.985 40 H 0.016 0.984 41 H 0.245 0.755 42 H 0.122 0.878 43 H 0.065 0.935 44 H 0.143 0.857 45 H 0.181 0.819 46 H 0.118 0.882 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.275 -6.561 -18.807 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C -0.023 4.023 4 N -0.337 5.337 5 C 0.275 3.725 6 O -0.433 6.433 7 C 0.038 3.962 8 H 0.116 0.884 9 C -0.207 4.207 10 N -0.311 5.311 11 C 0.049 3.951 12 C -0.396 4.396 13 H 0.105 0.895 14 C -0.252 4.252 15 N -0.579 5.579 16 Si 0.794 3.206 17 H -0.216 1.216 18 H -0.231 1.231 19 H -0.183 1.183 20 C 0.052 3.948 21 H 0.176 0.824 22 C -0.186 4.186 23 C -0.685 4.685 24 S 2.572 3.428 25 O -0.989 6.989 26 O -0.966 6.966 27 C -0.729 4.729 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.079 0.921 33 H 0.126 0.874 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.121 0.879 37 H 0.059 0.941 38 H 0.015 0.985 39 H 0.033 0.967 40 H 0.035 0.965 41 H 0.054 0.946 42 H 0.141 0.859 43 H 0.084 0.916 44 H 0.161 0.839 45 H 0.199 0.801 46 H 0.136 0.864 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.666 -7.070 -18.722 23.164 hybrid contribution 0.179 1.060 1.411 1.774 sum -11.487 -6.010 -17.311 21.628 Atomic orbital electron populations 1.21697 0.93940 1.02314 1.02634 1.22162 0.97124 0.96398 1.03164 1.22077 0.77244 0.98199 1.04775 1.48274 1.07748 1.71461 1.06221 1.22704 0.89814 0.74600 0.85389 1.90688 1.17140 1.50070 1.85409 1.20745 0.92548 0.98148 0.84794 0.88387 1.22359 1.00499 0.95044 1.02844 1.44191 1.36523 1.18679 1.31729 1.20303 0.89827 0.89432 0.95568 1.19689 1.02674 0.98154 1.19087 0.89497 1.25655 0.94643 1.01436 1.03422 1.70459 1.02020 1.48609 1.36792 0.85266 0.77589 0.77873 0.79859 1.21626 1.23052 1.18321 1.21604 0.92328 0.89390 0.91443 0.82366 1.22711 0.96460 1.00510 0.98917 1.30363 1.08909 1.18945 1.10273 1.08865 0.78127 0.80193 0.75566 1.93583 1.54449 1.87346 1.63538 1.93546 1.86858 1.64732 1.51498 1.30795 1.19337 1.08385 1.14432 0.91296 0.92303 0.92544 0.90541 0.92059 0.87371 0.89769 0.92423 0.87900 0.94101 0.98544 0.96666 0.96534 0.94566 0.85947 0.91624 0.83922 0.80142 0.86357 0.81331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.86 71.98 0.71 -0.66 16 2 C -0.15 -1.81 5.33 30.60 0.16 -1.65 16 3 C 0.10 1.42 4.80 86.38 0.41 1.84 16 4 N -0.60 -13.78 2.45 -794.02 -1.95 -15.73 16 5 C 0.49 17.43 5.96 87.66 0.52 17.95 16 6 O -0.56 -25.75 11.03 -3.02 -0.03 -25.78 16 7 C 0.15 5.52 2.29 44.24 0.10 5.62 16 8 H 0.10 3.30 6.46 -2.39 -0.02 3.28 16 9 C -0.15 -4.35 7.38 71.98 0.53 -3.82 16 10 N -0.59 -29.76 2.65 -707.00 -1.87 -31.63 16 11 C 0.19 10.58 7.53 127.77 0.96 11.54 16 12 C -0.27 -14.50 9.65 84.03 0.81 -13.68 16 13 H 0.09 4.38 7.81 -2.91 -0.02 4.36 16 14 C -0.06 -3.21 4.86 84.86 0.41 -2.80 16 15 N -0.93 -58.56 10.85 21.65 0.23 -58.32 16 16 Si 0.97 45.40 29.62 68.60 2.03 47.44 16 17 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 18 H -0.30 -14.62 7.11 99.48 0.71 -13.92 16 19 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 20 C 0.16 2.89 2.96 45.68 0.14 3.02 16 21 H 0.16 1.17 7.91 -2.39 -0.02 1.15 16 22 C -0.15 -3.09 5.79 31.59 0.18 -2.91 16 23 C -0.55 -9.14 7.31 72.68 0.53 -8.61 16 24 S 2.38 59.67 6.10 -56.49 -0.34 59.33 16 25 O -0.99 -37.93 18.15 -127.47 -2.31 -40.25 16 26 O -0.97 -26.77 18.15 -127.47 -2.31 -29.08 16 27 C -0.60 -13.02 6.55 72.38 0.47 -12.55 16 28 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.98 5.58 -2.39 -0.01 0.97 16 33 H 0.11 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.08 1.34 5.48 -2.38 -0.01 1.33 16 35 H 0.06 1.85 8.11 -2.39 -0.02 1.83 16 36 H 0.10 2.11 4.79 -2.38 -0.01 2.09 16 37 H 0.04 1.24 7.44 -2.38 -0.02 1.23 16 38 H 0.00 -0.24 6.88 -2.39 -0.02 -0.26 16 39 H 0.01 0.87 6.87 -2.39 -0.02 0.85 16 40 H 0.02 0.79 6.97 -2.39 -0.02 0.78 16 41 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.07 2.15 5.90 -2.39 -0.01 2.14 16 44 H 0.14 2.37 8.14 -2.38 -0.02 2.35 16 45 H 0.18 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.12 3.60 6.19 -2.39 -0.01 3.58 16 47 H 0.17 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -89.72 368.54 0.36 -89.35 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.96 Total: 11.39 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.95 Total: -6.71 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -3.58 Total: -105.68 kcal Atomic # 8 Polarization: -90.45 SS G_CDS: -4.66 Total: -95.11 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.44 kcal Atomic # 16 Polarization: 59.67 SS G_CDS: -0.34 Total: 59.33 kcal Total: -89.72 0.36 -89.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.866 kcal (2) G-P(sol) polarization free energy of solvation -89.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds