Wall clock time and date at job start Tue Mar 31 2020 16:33:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 N 1.46508 * 109.47516 * 186.24317 * 3 2 1 5 5 C 1.34776 * 119.99884 * 97.94512 * 4 3 2 6 6 O 1.21282 * 119.99546 * 179.47370 * 5 4 3 7 7 C 1.50701 * 119.99978 * 359.74149 * 5 4 3 8 8 H 1.09003 * 109.46992 * 47.66798 * 7 5 4 9 9 C 1.52996 * 109.47565 * 287.66617 * 7 5 4 10 10 N 1.46505 * 109.46871 * 167.66610 * 7 5 4 11 11 C 1.46496 * 119.99833 * 60.00065 * 10 7 5 12 12 C 1.36933 * 120.00036 * 240.00278 * 10 7 5 13 13 H 1.08009 * 119.99891 * 28.96606 * 12 10 7 14 14 C 1.38808 * 120.00388 * 208.96753 * 12 10 7 15 15 N 1.31626 * 119.99545 * 7.70344 * 14 12 10 16 16 Si 1.86801 * 120.00378 * 187.70370 * 14 12 10 17 17 H 1.48499 * 109.46691 * 90.00193 * 16 14 12 18 18 H 1.48498 * 109.47222 * 209.99887 * 16 14 12 19 19 H 1.48493 * 109.47188 * 330.00147 * 16 14 12 20 20 C 1.46500 * 119.99968 * 277.95171 * 4 3 2 21 21 H 1.09007 * 109.64164 * 0.42121 * 20 4 3 22 22 C 1.53876 * 109.64350 * 239.99482 * 20 4 3 23 23 C 1.55047 * 106.62592 * 192.96289 * 22 20 4 24 24 S 1.83291 * 102.56115 * 42.43362 * 23 22 20 25 25 O 1.42100 * 109.35339 * 90.19112 * 24 23 22 26 26 O 1.42100 * 109.35347 * 223.38333 * 24 23 22 27 27 C 1.54166 * 109.64986 * 120.72075 * 20 4 3 28 28 H 1.09004 * 109.47351 * 60.00034 * 1 2 3 29 29 H 1.09006 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47675 * 299.99772 * 1 2 3 31 31 H 1.09002 * 109.47675 * 240.00228 * 2 1 3 32 32 H 1.09004 * 109.47351 * 119.99966 * 2 1 3 33 33 H 1.08998 * 109.47387 * 66.24848 * 3 2 1 34 34 H 1.08999 * 109.47334 * 306.24082 * 3 2 1 35 35 H 1.08996 * 109.47210 * 199.04841 * 9 7 5 36 36 H 1.09001 * 109.47076 * 319.05539 * 9 7 5 37 37 H 1.09000 * 109.46924 * 79.04931 * 9 7 5 38 38 H 1.09005 * 109.47031 * 95.11693 * 11 10 7 39 39 H 1.08999 * 109.47062 * 215.10878 * 11 10 7 40 40 H 1.09000 * 109.47435 * 335.11455 * 11 10 7 41 41 H 0.96997 * 119.99772 * 179.97438 * 15 14 12 42 42 H 1.08993 * 110.02906 * 312.26129 * 22 20 4 43 43 H 1.09004 * 110.02832 * 73.67447 * 22 20 4 44 44 H 1.08998 * 110.79288 * 160.70291 * 23 22 20 45 45 H 1.09002 * 110.78963 * 283.98046 * 23 22 20 46 46 H 1.09003 * 110.31676 * 266.66614 * 27 20 4 47 47 H 1.08999 * 110.31554 * 28.85751 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4972 1.4453 -0.1502 5 6 4.0493 1.6498 -1.3626 6 8 5.2559 1.6616 -1.4852 7 6 3.1675 1.8696 -2.5647 8 1 2.4027 2.6081 -2.3241 9 6 2.4978 0.5503 -2.9542 10 7 3.9794 2.3542 -3.6838 11 6 5.0808 1.5364 -4.1977 12 6 3.7087 3.5716 -4.2494 13 1 3.2685 4.3578 -3.6539 14 6 3.9998 3.7951 -5.5881 15 7 4.3930 2.7975 -6.3515 16 14 3.8336 5.5116 -6.3061 17 1 5.1222 6.2353 -6.1617 18 1 3.4793 5.4141 -7.7449 19 1 2.7675 6.2497 -5.5827 20 6 4.3544 1.2258 1.0174 21 1 3.7363 1.0723 1.9021 22 6 5.2647 2.4484 1.2281 23 6 6.3522 2.0214 2.2474 24 16 6.7986 0.3392 1.6727 25 8 7.8637 0.4286 0.7363 26 8 6.9099 -0.5273 2.7935 27 6 5.2392 -0.0151 0.7850 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7708 1.9231 0.9406 34 1 1.5882 1.9876 -0.8288 35 1 2.1441 0.6123 -3.9834 36 1 3.2183 -0.2628 -2.8659 37 1 1.6538 0.3615 -2.2908 38 1 4.7317 0.9491 -5.0470 39 1 5.8972 2.1849 -4.5155 40 1 5.4330 0.8668 -3.4130 41 1 4.5961 2.9536 -7.2870 42 1 5.7292 2.7349 0.2846 43 1 4.6852 3.2809 1.6272 44 1 7.2127 2.6885 2.1973 45 1 5.9451 1.9928 3.2581 46 1 4.7615 -0.9033 1.1986 47 1 5.4315 -0.1488 -0.2795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:29 Heat of formation + Delta-G solvation = -67.987086 kcal Electronic energy + Delta-G solvation = -29019.107648 eV Core-core repulsion = 25137.887114 eV Total energy + Delta-G solvation = -3881.220535 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.28718 -37.04573 -36.83122 -36.01994 -35.77915 -34.85599 -32.34307 -31.91894 -29.84321 -29.03832 -26.24926 -25.88687 -25.29689 -23.92323 -22.48113 -21.77647 -20.80702 -18.88311 -18.29277 -17.22007 -17.09321 -16.68520 -16.03148 -15.96874 -15.56545 -14.96606 -14.93100 -14.65089 -14.25899 -13.98007 -13.78700 -13.59346 -13.36105 -12.77710 -12.70035 -12.55472 -12.41469 -12.26768 -12.23410 -12.06528 -12.00110 -11.82402 -11.59648 -11.52652 -11.32536 -11.24028 -10.92169 -10.78481 -10.76223 -10.67284 -10.58581 -10.37405 -10.18933 -10.07097 -9.87917 -8.96320 -8.56914 -8.52633 -6.68959 -5.71505 -3.26540 -0.00445 2.43654 3.05323 3.11920 3.37424 3.43164 3.44284 3.54396 3.97183 4.26327 4.42302 4.50005 4.50677 4.66224 4.77033 4.80690 4.90160 5.06875 5.23205 5.30249 5.32857 5.39273 5.41050 5.48132 5.53179 5.55123 5.63797 5.75901 5.82630 5.89645 5.95373 5.99116 6.03074 6.09474 6.33226 6.45886 6.66817 6.87118 7.09378 7.52137 7.63663 7.79028 7.88729 8.39487 8.67956 9.23175 9.82736 10.34559 11.30581 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.004252 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.498676 B = 6583.424819 C = 7854.807731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.108 3.892 4 N -0.614 5.614 5 C 0.495 3.505 6 O -0.516 6.516 7 C 0.161 3.839 8 H 0.085 0.915 9 C -0.163 4.163 10 N -0.572 5.572 11 C 0.163 3.837 12 C -0.264 4.264 13 H 0.064 0.936 14 C 0.012 3.988 15 N -0.899 5.899 16 Si 0.906 3.094 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.279 1.279 20 C 0.163 3.837 21 H 0.101 0.899 22 C -0.140 4.140 23 C -0.584 4.584 24 S 2.391 3.609 25 O -0.925 6.925 26 O -0.949 6.949 27 C -0.607 4.607 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.034 0.966 40 H 0.017 0.983 41 H 0.253 0.747 42 H 0.113 0.887 43 H 0.095 0.905 44 H 0.137 0.863 45 H 0.134 0.866 46 H 0.135 0.865 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.447 -4.707 18.277 19.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.192 4.192 3 C -0.016 4.016 4 N -0.350 5.350 5 C 0.283 3.717 6 O -0.389 6.389 7 C 0.048 3.952 8 H 0.103 0.897 9 C -0.223 4.223 10 N -0.292 5.292 11 C 0.019 3.981 12 C -0.394 4.394 13 H 0.081 0.919 14 C -0.188 4.188 15 N -0.542 5.542 16 Si 0.736 3.264 17 H -0.214 1.214 18 H -0.216 1.216 19 H -0.204 1.204 20 C 0.057 3.943 21 H 0.119 0.881 22 C -0.180 4.180 23 C -0.714 4.714 24 S 2.574 3.426 25 O -0.922 6.922 26 O -0.946 6.946 27 C -0.737 4.737 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.131 0.869 43 H 0.113 0.887 44 H 0.156 0.844 45 H 0.152 0.848 46 H 0.153 0.847 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.874 -5.229 18.067 19.430 hybrid contribution -0.801 1.333 -0.481 1.628 sum -5.675 -3.895 17.586 18.885 Atomic orbital electron populations 1.21710 0.95175 1.01905 1.02058 1.22201 0.96222 0.97501 1.03235 1.21750 0.79596 0.97046 1.03166 1.48377 1.06113 1.73479 1.07036 1.23017 0.90536 0.74086 0.84049 1.90612 1.15292 1.48468 1.84566 1.20257 0.91909 0.96122 0.86920 0.89705 1.22506 0.99558 0.97337 1.02881 1.43647 1.32452 1.19580 1.33546 1.20828 0.89175 0.93596 0.94472 1.19120 1.39716 0.88684 0.91851 0.91869 1.25135 1.00415 0.97341 0.95866 1.70059 1.49044 1.29331 1.05805 0.86248 0.77925 0.83968 0.78276 1.21395 1.21623 1.20450 1.21196 0.92198 0.90544 0.90352 0.88069 1.22694 0.95958 0.99094 1.00209 1.30537 1.09209 1.23169 1.08470 1.08960 0.78357 0.78828 0.76490 1.93658 1.50349 1.85937 1.62235 1.93588 1.86494 1.63463 1.51034 1.30928 1.19582 1.06296 1.16942 0.92147 0.92598 0.92780 0.90195 0.92051 0.90971 0.89043 0.90911 0.93567 0.92473 0.95484 0.94703 0.96469 0.93656 0.86908 0.88662 0.84432 0.84811 0.84694 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.15 0.37 -0.72 16 2 C -0.15 -1.30 5.38 -26.74 -0.14 -1.44 16 3 C 0.11 1.01 4.81 -4.04 -0.02 0.99 16 4 N -0.61 -7.60 2.45 -164.89 -0.40 -8.00 16 5 C 0.50 8.60 5.91 -10.99 -0.06 8.54 16 6 O -0.52 -10.68 10.54 5.56 0.06 -10.62 16 7 C 0.16 3.08 2.28 -69.08 -0.16 2.92 16 8 H 0.09 1.53 6.48 -51.93 -0.34 1.19 16 9 C -0.16 -2.71 7.94 37.16 0.30 -2.41 16 10 N -0.57 -14.22 2.65 -174.81 -0.46 -14.68 16 11 C 0.16 4.25 7.80 59.84 0.47 4.72 16 12 C -0.26 -7.15 9.52 -15.06 -0.14 -7.29 16 13 H 0.06 1.66 7.84 -52.48 -0.41 1.25 16 14 C 0.01 0.33 5.20 -17.43 -0.09 0.24 16 15 N -0.90 -26.15 10.80 55.49 0.60 -25.55 16 16 Si 0.91 21.65 29.56 -169.99 -5.03 16.62 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 C 0.16 1.68 2.96 -66.87 -0.20 1.48 16 21 H 0.10 0.68 7.91 -51.93 -0.41 0.27 16 22 C -0.14 -1.50 5.80 -25.19 -0.15 -1.65 16 23 C -0.58 -5.12 7.31 38.24 0.28 -4.84 16 24 S 2.39 28.43 6.10 -107.50 -0.66 27.77 16 25 O -0.92 -15.57 18.15 -57.71 -1.05 -16.62 16 26 O -0.95 -13.10 18.15 -57.71 -1.05 -14.15 16 27 C -0.61 -6.72 6.54 37.77 0.25 -6.47 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.81 5.62 -51.93 -0.29 0.52 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.09 0.92 5.50 -51.93 -0.29 0.64 16 35 H 0.07 1.38 8.13 -51.93 -0.42 0.96 16 36 H 0.05 0.78 7.99 -51.93 -0.41 0.36 16 37 H 0.06 0.72 4.63 -51.93 -0.24 0.48 16 38 H 0.03 0.74 7.23 -51.93 -0.38 0.37 16 39 H 0.03 0.99 7.60 -51.93 -0.39 0.59 16 40 H 0.02 0.41 6.05 -51.93 -0.31 0.10 16 41 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 42 H 0.11 1.63 6.00 -51.93 -0.31 1.32 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.14 1.12 8.14 -51.93 -0.42 0.69 16 45 H 0.13 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.15 2.17 6.09 -51.93 -0.32 1.86 16 LS Contribution 369.72 15.07 5.57 5.57 Total: -1.00 -36.59 369.72 -9.18 -45.77 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -7.46 Total: -0.19 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 0.69 Total: -5.92 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: -0.27 Total: -48.24 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -2.04 Total: -41.39 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Atomic # 16 Polarization: 28.43 SS G_CDS: -0.66 Total: 27.77 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.59 -9.18 -45.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.212 kcal (2) G-P(sol) polarization free energy of solvation -36.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds