Wall clock time and date at job start Tue Mar 31 2020 16:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53000 * 109.47127 * 2 1 4 4 N 1.46508 * 109.47516 * 186.24317 * 3 2 1 5 5 C 1.34776 * 119.99884 * 97.94512 * 4 3 2 6 6 O 1.21282 * 119.99546 * 179.47370 * 5 4 3 7 7 C 1.50701 * 119.99978 * 359.74149 * 5 4 3 8 8 H 1.09003 * 109.46992 * 47.66798 * 7 5 4 9 9 C 1.52996 * 109.47565 * 287.66617 * 7 5 4 10 10 N 1.46505 * 109.46871 * 167.66610 * 7 5 4 11 11 C 1.46496 * 119.99833 * 60.00065 * 10 7 5 12 12 C 1.36933 * 120.00036 * 240.00278 * 10 7 5 13 13 H 1.08009 * 119.99891 * 28.96606 * 12 10 7 14 14 C 1.38808 * 120.00388 * 208.96753 * 12 10 7 15 15 N 1.31626 * 119.99545 * 7.70344 * 14 12 10 16 16 Si 1.86801 * 120.00378 * 187.70370 * 14 12 10 17 17 H 1.48499 * 109.46691 * 90.00193 * 16 14 12 18 18 H 1.48498 * 109.47222 * 209.99887 * 16 14 12 19 19 H 1.48493 * 109.47188 * 330.00147 * 16 14 12 20 20 C 1.46500 * 119.99968 * 277.95171 * 4 3 2 21 21 H 1.09007 * 109.64164 * 0.42121 * 20 4 3 22 22 C 1.53876 * 109.64350 * 239.99482 * 20 4 3 23 23 C 1.55047 * 106.62592 * 192.96289 * 22 20 4 24 24 S 1.83291 * 102.56115 * 42.43362 * 23 22 20 25 25 O 1.42100 * 109.35339 * 90.19112 * 24 23 22 26 26 O 1.42100 * 109.35347 * 223.38333 * 24 23 22 27 27 C 1.54166 * 109.64986 * 120.72075 * 20 4 3 28 28 H 1.09004 * 109.47351 * 60.00034 * 1 2 3 29 29 H 1.09006 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47675 * 299.99772 * 1 2 3 31 31 H 1.09002 * 109.47675 * 240.00228 * 2 1 3 32 32 H 1.09004 * 109.47351 * 119.99966 * 2 1 3 33 33 H 1.08998 * 109.47387 * 66.24848 * 3 2 1 34 34 H 1.08999 * 109.47334 * 306.24082 * 3 2 1 35 35 H 1.08996 * 109.47210 * 199.04841 * 9 7 5 36 36 H 1.09001 * 109.47076 * 319.05539 * 9 7 5 37 37 H 1.09000 * 109.46924 * 79.04931 * 9 7 5 38 38 H 1.09005 * 109.47031 * 95.11693 * 11 10 7 39 39 H 1.08999 * 109.47062 * 215.10878 * 11 10 7 40 40 H 1.09000 * 109.47435 * 335.11455 * 11 10 7 41 41 H 0.96997 * 119.99772 * 179.97438 * 15 14 12 42 42 H 1.08993 * 110.02906 * 312.26129 * 22 20 4 43 43 H 1.09004 * 110.02832 * 73.67447 * 22 20 4 44 44 H 1.08998 * 110.79288 * 160.70291 * 23 22 20 45 45 H 1.09002 * 110.78963 * 283.98046 * 23 22 20 46 46 H 1.09003 * 110.31676 * 266.66614 * 27 20 4 47 47 H 1.08999 * 110.31554 * 28.85751 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.4972 1.4453 -0.1502 5 6 4.0493 1.6498 -1.3626 6 8 5.2559 1.6616 -1.4852 7 6 3.1675 1.8696 -2.5647 8 1 2.4027 2.6081 -2.3241 9 6 2.4978 0.5503 -2.9542 10 7 3.9794 2.3542 -3.6838 11 6 5.0808 1.5364 -4.1977 12 6 3.7087 3.5716 -4.2494 13 1 3.2685 4.3578 -3.6539 14 6 3.9998 3.7951 -5.5881 15 7 4.3930 2.7975 -6.3515 16 14 3.8336 5.5116 -6.3061 17 1 5.1222 6.2353 -6.1617 18 1 3.4793 5.4141 -7.7449 19 1 2.7675 6.2497 -5.5827 20 6 4.3544 1.2258 1.0174 21 1 3.7363 1.0723 1.9021 22 6 5.2647 2.4484 1.2281 23 6 6.3522 2.0214 2.2474 24 16 6.7986 0.3392 1.6727 25 8 7.8637 0.4286 0.7363 26 8 6.9099 -0.5273 2.7935 27 6 5.2392 -0.0151 0.7850 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7708 1.9231 0.9406 34 1 1.5882 1.9876 -0.8288 35 1 2.1441 0.6123 -3.9834 36 1 3.2183 -0.2628 -2.8659 37 1 1.6538 0.3615 -2.2908 38 1 4.7317 0.9491 -5.0470 39 1 5.8972 2.1849 -4.5155 40 1 5.4330 0.8668 -3.4130 41 1 4.5961 2.9536 -7.2870 42 1 5.7292 2.7349 0.2846 43 1 4.6852 3.2809 1.6272 44 1 7.2127 2.6885 2.1973 45 1 5.9451 1.9928 3.2581 46 1 4.7615 -0.9033 1.1986 47 1 5.4315 -0.1488 -0.2795 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972283.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:28 Heat of formation + Delta-G solvation = -95.395532 kcal Electronic energy + Delta-G solvation = -29020.296168 eV Core-core repulsion = 25137.887114 eV Total energy + Delta-G solvation = -3882.409054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.48735 -38.15991 -38.07129 -37.07977 -37.06156 -36.09949 -33.76657 -33.14442 -31.15723 -30.37786 -27.98917 -26.99614 -26.37708 -25.46453 -23.74151 -22.50471 -22.17263 -19.84180 -19.50275 -18.91991 -18.17607 -17.83598 -17.28081 -17.06787 -16.71276 -16.45580 -16.09815 -15.76067 -15.36909 -15.23894 -15.11423 -14.76922 -14.57418 -14.16103 -14.05081 -13.59364 -13.35368 -13.28453 -13.22275 -13.12157 -13.10488 -12.99974 -12.84260 -12.80301 -12.66611 -12.53049 -12.31658 -12.30750 -12.13627 -12.02589 -11.98666 -11.85057 -11.64898 -11.32418 -11.21580 -10.72380 -10.32731 -9.61764 -8.70470 -7.80393 -5.38192 -0.91046 1.45601 1.48700 1.54233 1.56605 1.79169 2.05293 2.51322 2.64842 3.07487 3.32071 3.40174 3.57583 3.64538 3.70282 3.89918 3.99743 4.06237 4.13942 4.25852 4.32615 4.45261 4.50957 4.57726 4.62118 4.70161 4.79849 4.81864 4.86940 4.90326 4.98633 5.02304 5.07714 5.12986 5.30566 5.33115 5.37812 5.41699 5.62827 5.64213 5.68996 5.76031 6.31728 6.45437 7.13253 7.37229 7.83695 8.31689 9.20890 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012601 B = 0.004252 C = 0.003564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2221.498676 B = 6583.424819 C = 7854.807731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.150 4.150 3 C 0.098 3.902 4 N -0.600 5.600 5 C 0.497 3.503 6 O -0.557 6.557 7 C 0.152 3.848 8 H 0.099 0.901 9 C -0.148 4.148 10 N -0.591 5.591 11 C 0.191 3.809 12 C -0.269 4.269 13 H 0.072 0.928 14 C -0.047 4.047 15 N -0.936 5.936 16 Si 0.971 3.029 17 H -0.293 1.293 18 H -0.293 1.293 19 H -0.259 1.259 20 C 0.157 3.843 21 H 0.159 0.841 22 C -0.145 4.145 23 C -0.551 4.551 24 S 2.385 3.615 25 O -0.990 6.990 26 O -0.971 6.971 27 C -0.601 4.601 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.113 0.887 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.037 0.963 37 H 0.101 0.899 38 H 0.003 0.997 39 H -0.005 1.005 40 H 0.026 0.974 41 H 0.248 0.752 42 H 0.068 0.932 43 H 0.125 0.875 44 H 0.145 0.855 45 H 0.180 0.820 46 H 0.166 0.834 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 -3.757 22.122 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.189 4.189 3 C -0.024 4.024 4 N -0.333 5.333 5 C 0.285 3.715 6 O -0.435 6.435 7 C 0.041 3.959 8 H 0.116 0.884 9 C -0.207 4.207 10 N -0.313 5.313 11 C 0.046 3.954 12 C -0.399 4.399 13 H 0.090 0.910 14 C -0.243 4.243 15 N -0.581 5.581 16 Si 0.799 3.201 17 H -0.220 1.220 18 H -0.220 1.220 19 H -0.184 1.184 20 C 0.052 3.948 21 H 0.177 0.823 22 C -0.184 4.184 23 C -0.684 4.684 24 S 2.573 3.427 25 O -0.987 6.987 26 O -0.968 6.968 27 C -0.733 4.733 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.097 0.903 33 H 0.131 0.869 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.119 0.881 38 H 0.021 0.979 39 H 0.014 0.986 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.143 0.857 44 H 0.164 0.836 45 H 0.198 0.802 46 H 0.184 0.816 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.819 -4.323 21.986 23.732 hybrid contribution 0.014 1.029 -1.517 1.833 sum -7.805 -3.294 20.469 22.153 Atomic orbital electron populations 1.21696 0.94027 1.02295 1.02622 1.22155 0.97108 0.96537 1.03079 1.22099 0.77170 0.98107 1.05005 1.48159 1.07789 1.71436 1.05941 1.22269 0.89411 0.74543 0.85309 1.90622 1.16759 1.50603 1.85483 1.20547 0.91969 0.97393 0.85978 0.88357 1.22340 1.00555 0.95702 1.02114 1.43768 1.33010 1.19241 1.35272 1.20370 0.88594 0.92665 0.93800 1.19514 1.38463 0.89840 0.92052 0.91010 1.25950 1.00897 1.00948 0.96467 1.70234 1.50844 1.31354 1.05674 0.85221 0.77899 0.79715 0.77294 1.21992 1.21950 1.18362 1.21646 0.92506 0.89697 0.90960 0.82343 1.22704 0.96603 1.00281 0.98837 1.30369 1.09124 1.18810 1.10114 1.08853 0.78003 0.80293 0.75551 1.93579 1.53686 1.87315 1.64154 1.93549 1.86911 1.65283 1.51074 1.30823 1.19263 1.08440 1.14754 0.92811 0.92366 0.91047 0.92356 0.90301 0.86938 0.89884 0.93743 0.94378 0.88097 0.97883 0.98582 0.95586 0.94324 0.91282 0.85682 0.83646 0.80248 0.81594 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.91 71.98 0.71 -0.80 16 2 C -0.15 -1.90 5.38 30.59 0.16 -1.73 16 3 C 0.10 1.39 4.81 86.38 0.42 1.80 16 4 N -0.60 -12.96 2.45 -793.98 -1.95 -14.90 16 5 C 0.50 16.98 5.91 87.66 0.52 17.50 16 6 O -0.56 -23.78 10.54 -3.03 -0.03 -23.82 16 7 C 0.15 5.79 2.28 44.24 0.10 5.89 16 8 H 0.10 3.42 6.48 -2.39 -0.02 3.40 16 9 C -0.15 -4.90 7.94 71.98 0.57 -4.32 16 10 N -0.59 -30.35 2.65 -706.98 -1.87 -32.22 16 11 C 0.19 10.55 7.80 127.77 1.00 11.54 16 12 C -0.27 -14.80 9.52 84.03 0.80 -14.00 16 13 H 0.07 3.74 7.84 -2.91 -0.02 3.72 16 14 C -0.05 -2.66 5.20 84.86 0.44 -2.22 16 15 N -0.94 -56.91 10.80 21.65 0.23 -56.67 16 16 Si 0.97 45.29 29.56 68.60 2.03 47.32 16 17 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 18 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 20 C 0.16 2.58 2.96 45.68 0.14 2.72 16 21 H 0.16 0.93 7.91 -2.38 -0.02 0.91 16 22 C -0.14 -2.61 5.80 31.59 0.18 -2.43 16 23 C -0.55 -7.69 7.31 72.68 0.53 -7.16 16 24 S 2.38 54.86 6.10 -56.49 -0.34 54.51 16 25 O -0.99 -35.26 18.15 -127.49 -2.31 -37.57 16 26 O -0.97 -25.49 18.15 -127.49 -2.31 -27.81 16 27 C -0.60 -12.20 6.54 72.38 0.47 -11.72 16 28 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 1.00 5.62 -2.39 -0.01 0.99 16 32 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.11 0.81 8.10 -2.39 -0.02 0.79 16 34 H 0.08 1.36 5.50 -2.39 -0.01 1.35 16 35 H 0.04 1.72 8.13 -2.39 -0.02 1.70 16 36 H 0.04 1.30 7.99 -2.39 -0.02 1.28 16 37 H 0.10 2.39 4.63 -2.39 -0.01 2.38 16 38 H 0.00 0.18 7.23 -2.38 -0.02 0.16 16 39 H 0.00 -0.29 7.60 -2.39 -0.02 -0.31 16 40 H 0.03 1.35 6.05 -2.39 -0.01 1.34 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.07 1.96 6.00 -2.39 -0.01 1.94 16 43 H 0.12 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.18 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.17 2.20 8.14 -2.39 -0.02 2.19 16 47 H 0.12 3.47 6.09 -2.39 -0.01 3.45 16 Total: -1.00 -87.06 369.72 0.45 -86.62 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.96 Total: 9.48 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: 6.05 Total: -4.93 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -3.59 Total: -103.80 kcal Atomic # 8 Polarization: -84.54 SS G_CDS: -4.66 Total: -89.20 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Atomic # 16 Polarization: 54.86 SS G_CDS: -0.34 Total: 54.51 kcal Total: -87.06 0.45 -86.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972283.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.780 kcal (2) G-P(sol) polarization free energy of solvation -87.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds