Wall clock time and date at job start Tue Mar 31 2020 16:33:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47179 * 2 1 4 4 N 1.46500 * 109.47397 * 185.92707 * 3 2 1 5 5 C 1.34767 * 120.00129 * 96.52019 * 4 3 2 6 6 O 1.21289 * 120.00145 * 186.38384 * 5 4 3 7 7 C 1.50704 * 120.00212 * 6.39428 * 5 4 3 8 8 H 1.08997 * 109.46835 * 47.00217 * 7 5 4 9 9 C 1.53004 * 109.46740 * 287.00652 * 7 5 4 10 10 N 1.46500 * 109.47468 * 167.00653 * 7 5 4 11 11 C 1.46502 * 120.00016 * 59.99253 * 10 7 5 12 12 C 1.36931 * 119.99584 * 239.99882 * 10 7 5 13 13 H 1.08002 * 120.00480 * 24.06073 * 12 10 7 14 14 C 1.38817 * 119.99606 * 204.06428 * 12 10 7 15 15 N 1.31609 * 120.00172 * 8.98746 * 14 12 10 16 16 Si 1.86799 * 119.99766 * 188.98941 * 14 12 10 17 17 H 1.48502 * 109.47624 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47174 * 120.00011 * 16 14 12 19 19 H 1.48506 * 109.47369 * 239.99906 * 16 14 12 20 20 C 1.46501 * 119.99667 * 276.52326 * 4 3 2 21 21 H 1.09001 * 109.64652 * 0.42829 * 20 4 3 22 22 C 1.53883 * 109.64666 * 120.72388 * 20 4 3 23 23 C 1.55046 * 106.62462 * 167.03032 * 22 20 4 24 24 S 1.83288 * 102.56722 * 317.56717 * 23 22 20 25 25 O 1.42093 * 109.35423 * 269.81432 * 24 23 22 26 26 O 1.42106 * 109.47314 * 136.64403 * 24 23 22 27 27 C 1.54162 * 109.64744 * 239.99725 * 20 4 3 28 28 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47093 * 299.99763 * 1 2 3 30 30 H 1.08996 * 109.47195 * 59.99654 * 1 2 3 31 31 H 1.09002 * 109.47318 * 240.00650 * 2 1 3 32 32 H 1.08996 * 109.47195 * 120.00346 * 2 1 3 33 33 H 1.09003 * 109.46969 * 65.92648 * 3 2 1 34 34 H 1.09002 * 109.47042 * 305.92832 * 3 2 1 35 35 H 1.09001 * 109.47089 * 189.65881 * 9 7 5 36 36 H 1.08994 * 109.47515 * 69.65033 * 9 7 5 37 37 H 1.09010 * 109.46732 * 309.65287 * 9 7 5 38 38 H 1.09006 * 109.46483 * 95.11352 * 11 10 7 39 39 H 1.08996 * 109.46915 * 215.10790 * 11 10 7 40 40 H 1.09002 * 109.47282 * 335.11705 * 11 10 7 41 41 H 0.97004 * 120.00366 * 180.02562 * 15 14 12 42 42 H 1.09000 * 110.02659 * 286.32745 * 22 20 4 43 43 H 1.09004 * 110.02160 * 47.73907 * 22 20 4 44 44 H 1.08997 * 110.79159 * 199.29672 * 23 22 20 45 45 H 1.08996 * 110.78872 * 75.83648 * 23 22 20 46 46 H 1.09007 * 110.31742 * 331.14619 * 27 20 4 47 47 H 1.08999 * 110.32039 * 93.33779 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4980 1.4450 -0.1426 5 6 4.0560 1.6186 -1.3570 6 8 5.2557 1.5056 -1.4950 7 6 3.1894 1.9532 -2.5437 8 1 2.4984 2.7522 -2.2751 9 6 2.3971 0.7130 -2.9624 10 7 4.0342 2.3919 -3.6572 11 6 5.0511 1.4905 -4.2045 12 6 3.8733 3.6446 -4.1864 13 1 3.4385 4.4318 -3.5883 14 6 4.2691 3.9027 -5.4916 15 7 4.6326 2.9114 -6.2773 16 14 4.2857 5.6571 -6.1329 17 1 3.8359 6.5805 -5.0605 18 1 5.6640 6.0180 -6.5516 19 1 3.3700 5.7675 -7.2968 20 6 4.3494 1.2589 1.0349 21 1 3.7271 1.1273 1.9201 22 6 5.2368 0.0167 0.8406 23 6 6.3233 0.0706 1.9453 24 16 6.8035 1.8395 1.9466 25 8 7.8742 2.0374 1.0336 26 8 6.9222 2.2972 3.2867 27 6 5.2574 2.4912 1.2182 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7658 1.9248 0.9383 34 1 1.5926 1.9861 -0.8322 35 1 1.9043 0.9016 -3.9162 36 1 1.6472 0.4878 -2.2042 37 1 3.0756 -0.1339 -3.0652 38 1 4.6425 0.9622 -5.0660 39 1 5.9217 2.0694 -4.5128 40 1 5.3456 0.7692 -3.4422 41 1 4.9095 3.0917 -7.1893 42 1 4.6398 -0.8889 0.9479 43 1 5.7038 0.0421 -0.1440 44 1 7.1726 -0.5606 1.6839 45 1 5.9081 -0.2182 2.9108 46 1 5.4605 2.9583 0.2544 47 1 4.7920 3.2068 1.8959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:32 Heat of formation + Delta-G solvation = -65.684949 kcal Electronic energy + Delta-G solvation = -29014.021324 eV Core-core repulsion = 25132.900617 eV Total energy + Delta-G solvation = -3881.120706 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.29937 -37.03129 -36.83856 -36.01296 -35.80216 -34.86486 -32.41005 -31.93477 -29.80370 -28.97082 -26.24312 -25.93635 -25.37822 -23.83312 -22.57494 -21.69091 -20.81605 -18.87821 -18.32494 -17.25060 -17.10709 -16.75673 -16.02009 -15.87421 -15.56453 -15.04118 -14.74724 -14.71968 -14.27741 -14.03952 -13.76096 -13.53854 -13.41805 -12.90593 -12.72048 -12.48604 -12.41245 -12.25128 -12.15709 -12.02517 -12.00550 -11.88743 -11.67264 -11.46594 -11.32806 -11.21380 -10.91882 -10.78487 -10.76482 -10.68199 -10.63126 -10.35242 -10.19071 -10.03459 -9.86431 -8.95443 -8.58206 -8.51652 -6.74715 -5.70740 -3.20829 0.00131 2.44514 3.03661 3.12584 3.38228 3.45071 3.46597 3.55652 3.97798 4.25762 4.42857 4.50155 4.51671 4.66645 4.75945 4.79971 4.90194 5.04467 5.22546 5.27108 5.32894 5.38227 5.42894 5.48309 5.50930 5.55775 5.62634 5.77294 5.79926 5.89346 5.93567 5.98033 5.98762 6.07326 6.32109 6.45032 6.66965 6.83221 7.08908 7.53479 7.65585 7.78005 7.91108 8.37696 8.67303 9.23563 9.84132 10.32955 11.31978 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.004557 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.966917 B = 6142.335006 C = 7748.080343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.151 4.151 3 C 0.107 3.893 4 N -0.615 5.615 5 C 0.496 3.504 6 O -0.515 6.515 7 C 0.161 3.839 8 H 0.085 0.915 9 C -0.166 4.166 10 N -0.573 5.573 11 C 0.166 3.834 12 C -0.262 4.262 13 H 0.066 0.934 14 C 0.008 3.992 15 N -0.901 5.901 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.289 1.289 19 H -0.290 1.290 20 C 0.163 3.837 21 H 0.101 0.899 22 C -0.142 4.142 23 C -0.584 4.584 24 S 2.391 3.609 25 O -0.924 6.924 26 O -0.948 6.948 27 C -0.608 4.608 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.069 0.931 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.024 0.976 39 H 0.039 0.961 40 H 0.016 0.984 41 H 0.252 0.748 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.153 0.847 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.152 -8.234 17.628 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.190 4.190 3 C -0.017 4.017 4 N -0.351 5.351 5 C 0.284 3.716 6 O -0.388 6.388 7 C 0.048 3.952 8 H 0.102 0.898 9 C -0.226 4.226 10 N -0.294 5.294 11 C 0.022 3.978 12 C -0.391 4.391 13 H 0.084 0.916 14 C -0.191 4.191 15 N -0.546 5.546 16 Si 0.736 3.264 17 H -0.204 1.204 18 H -0.215 1.215 19 H -0.216 1.216 20 C 0.057 3.943 21 H 0.119 0.881 22 C -0.181 4.181 23 C -0.714 4.714 24 S 2.573 3.427 25 O -0.921 6.921 26 O -0.945 6.945 27 C -0.738 4.738 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.112 0.888 43 H 0.135 0.865 44 H 0.156 0.844 45 H 0.151 0.849 46 H 0.171 0.829 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.558 -7.785 17.594 20.027 hybrid contribution -0.716 0.559 -0.587 1.081 sum -6.274 -7.227 17.007 19.515 Atomic orbital electron populations 1.21713 0.95132 1.01919 1.02111 1.22178 0.96260 0.97459 1.03068 1.21763 0.79631 0.96990 1.03285 1.48373 1.06093 1.74178 1.06463 1.23045 0.90246 0.74504 0.83845 1.90599 1.15759 1.48465 1.84015 1.20224 0.91362 0.96477 0.87152 0.89759 1.22536 0.99649 0.98165 1.02217 1.43703 1.37034 1.14624 1.34007 1.20827 0.91049 0.91976 0.93926 1.19212 1.39124 0.86335 0.94427 0.91588 1.25023 1.00932 0.97402 0.95707 1.70096 1.48661 1.29190 1.06610 0.86168 0.77407 0.84206 0.78597 1.20362 1.21525 1.21648 1.21206 0.92218 0.90397 0.90498 0.88094 1.22770 0.96178 0.99011 1.00178 1.30533 1.09386 1.24305 1.07176 1.08975 0.78319 0.79893 0.75466 1.93658 1.49934 1.83949 1.64604 1.93589 1.86407 1.79428 1.35109 1.30931 1.19359 1.08216 1.15279 0.92575 0.92745 0.92123 0.90331 0.92014 0.90942 0.89015 0.91235 0.92346 0.93206 0.95778 0.94198 0.96558 0.93744 0.88787 0.86527 0.84433 0.84859 0.82946 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.87 37.15 0.37 -0.67 16 2 C -0.15 -1.22 5.33 -26.73 -0.14 -1.37 16 3 C 0.11 1.00 4.82 -4.04 -0.02 0.98 16 4 N -0.62 -7.63 2.45 -164.89 -0.40 -8.03 16 5 C 0.50 8.62 5.95 -10.99 -0.07 8.56 16 6 O -0.51 -10.66 10.59 5.55 0.06 -10.61 16 7 C 0.16 3.08 2.28 -69.08 -0.16 2.92 16 8 H 0.08 1.53 6.70 -51.93 -0.35 1.18 16 9 C -0.17 -2.70 8.19 37.16 0.30 -2.40 16 10 N -0.57 -14.30 2.68 -174.81 -0.47 -14.77 16 11 C 0.17 4.32 7.67 59.85 0.46 4.78 16 12 C -0.26 -7.13 9.59 -15.06 -0.14 -7.28 16 13 H 0.07 1.74 7.82 -52.49 -0.41 1.33 16 14 C 0.01 0.23 5.18 -17.43 -0.09 0.14 16 15 N -0.90 -26.37 10.56 55.49 0.59 -25.78 16 16 Si 0.91 21.93 29.56 -169.99 -5.03 16.91 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.16 1.69 2.97 -66.86 -0.20 1.49 16 21 H 0.10 0.68 7.89 -51.93 -0.41 0.27 16 22 C -0.14 -1.47 5.80 -25.19 -0.15 -1.62 16 23 C -0.58 -5.03 7.31 38.24 0.28 -4.75 16 24 S 2.39 29.11 6.10 -107.50 -0.66 28.45 16 25 O -0.92 -15.92 18.14 -57.73 -1.05 -16.97 16 26 O -0.95 -13.39 18.15 -57.73 -1.05 -14.44 16 27 C -0.61 -7.06 6.57 37.77 0.25 -6.81 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.76 5.97 -51.93 -0.31 0.45 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.52 8.07 -51.93 -0.42 0.11 16 34 H 0.09 0.92 5.32 -51.93 -0.28 0.65 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 0.71 3.93 -51.93 -0.20 0.51 16 37 H 0.05 0.84 7.96 -51.92 -0.41 0.43 16 38 H 0.02 0.66 7.33 -51.93 -0.38 0.28 16 39 H 0.04 1.14 7.30 -51.93 -0.38 0.77 16 40 H 0.02 0.39 6.02 -51.93 -0.31 0.08 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.12 1.62 5.74 -51.93 -0.30 1.32 16 44 H 0.14 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.13 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.15 2.31 6.35 -51.92 -0.33 1.98 16 47 H 0.14 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 369.06 15.07 5.56 5.56 Total: -1.00 -36.93 369.06 -9.18 -46.11 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -7.43 Total: -0.42 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 0.69 Total: -6.02 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: -0.29 Total: -48.58 kcal Atomic # 8 Polarization: -39.98 SS G_CDS: -2.04 Total: -42.01 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Atomic # 16 Polarization: 29.11 SS G_CDS: -0.66 Total: 28.45 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.93 -9.18 -46.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.576 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds