Wall clock time and date at job start Tue Mar 31 2020 16:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47179 * 2 1 4 4 N 1.46500 * 109.47397 * 185.92707 * 3 2 1 5 5 C 1.34767 * 120.00129 * 96.52019 * 4 3 2 6 6 O 1.21289 * 120.00145 * 186.38384 * 5 4 3 7 7 C 1.50704 * 120.00212 * 6.39428 * 5 4 3 8 8 H 1.08997 * 109.46835 * 47.00217 * 7 5 4 9 9 C 1.53004 * 109.46740 * 287.00652 * 7 5 4 10 10 N 1.46500 * 109.47468 * 167.00653 * 7 5 4 11 11 C 1.46502 * 120.00016 * 59.99253 * 10 7 5 12 12 C 1.36931 * 119.99584 * 239.99882 * 10 7 5 13 13 H 1.08002 * 120.00480 * 24.06073 * 12 10 7 14 14 C 1.38817 * 119.99606 * 204.06428 * 12 10 7 15 15 N 1.31609 * 120.00172 * 8.98746 * 14 12 10 16 16 Si 1.86799 * 119.99766 * 188.98941 * 14 12 10 17 17 H 1.48502 * 109.47624 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47174 * 120.00011 * 16 14 12 19 19 H 1.48506 * 109.47369 * 239.99906 * 16 14 12 20 20 C 1.46501 * 119.99667 * 276.52326 * 4 3 2 21 21 H 1.09001 * 109.64652 * 0.42829 * 20 4 3 22 22 C 1.53883 * 109.64666 * 120.72388 * 20 4 3 23 23 C 1.55046 * 106.62462 * 167.03032 * 22 20 4 24 24 S 1.83288 * 102.56722 * 317.56717 * 23 22 20 25 25 O 1.42093 * 109.35423 * 269.81432 * 24 23 22 26 26 O 1.42106 * 109.47314 * 136.64403 * 24 23 22 27 27 C 1.54162 * 109.64744 * 239.99725 * 20 4 3 28 28 H 1.08999 * 109.47387 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47093 * 299.99763 * 1 2 3 30 30 H 1.08996 * 109.47195 * 59.99654 * 1 2 3 31 31 H 1.09002 * 109.47318 * 240.00650 * 2 1 3 32 32 H 1.08996 * 109.47195 * 120.00346 * 2 1 3 33 33 H 1.09003 * 109.46969 * 65.92648 * 3 2 1 34 34 H 1.09002 * 109.47042 * 305.92832 * 3 2 1 35 35 H 1.09001 * 109.47089 * 189.65881 * 9 7 5 36 36 H 1.08994 * 109.47515 * 69.65033 * 9 7 5 37 37 H 1.09010 * 109.46732 * 309.65287 * 9 7 5 38 38 H 1.09006 * 109.46483 * 95.11352 * 11 10 7 39 39 H 1.08996 * 109.46915 * 215.10790 * 11 10 7 40 40 H 1.09002 * 109.47282 * 335.11705 * 11 10 7 41 41 H 0.97004 * 120.00366 * 180.02562 * 15 14 12 42 42 H 1.09000 * 110.02659 * 286.32745 * 22 20 4 43 43 H 1.09004 * 110.02160 * 47.73907 * 22 20 4 44 44 H 1.08997 * 110.79159 * 199.29672 * 23 22 20 45 45 H 1.08996 * 110.78872 * 75.83648 * 23 22 20 46 46 H 1.09007 * 110.31742 * 331.14619 * 27 20 4 47 47 H 1.08999 * 110.32039 * 93.33779 * 27 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4980 1.4450 -0.1426 5 6 4.0560 1.6186 -1.3570 6 8 5.2557 1.5056 -1.4950 7 6 3.1894 1.9532 -2.5437 8 1 2.4984 2.7522 -2.2751 9 6 2.3971 0.7130 -2.9624 10 7 4.0342 2.3919 -3.6572 11 6 5.0511 1.4905 -4.2045 12 6 3.8733 3.6446 -4.1864 13 1 3.4385 4.4318 -3.5883 14 6 4.2691 3.9027 -5.4916 15 7 4.6326 2.9114 -6.2773 16 14 4.2857 5.6571 -6.1329 17 1 3.8359 6.5805 -5.0605 18 1 5.6640 6.0180 -6.5516 19 1 3.3700 5.7675 -7.2968 20 6 4.3494 1.2589 1.0349 21 1 3.7271 1.1273 1.9201 22 6 5.2368 0.0167 0.8406 23 6 6.3233 0.0706 1.9453 24 16 6.8035 1.8395 1.9466 25 8 7.8742 2.0374 1.0336 26 8 6.9222 2.2972 3.2867 27 6 5.2574 2.4912 1.2182 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.7658 1.9248 0.9383 34 1 1.5926 1.9861 -0.8322 35 1 1.9043 0.9016 -3.9162 36 1 1.6472 0.4878 -2.2042 37 1 3.0756 -0.1339 -3.0652 38 1 4.6425 0.9622 -5.0660 39 1 5.9217 2.0694 -4.5128 40 1 5.3456 0.7692 -3.4422 41 1 4.9095 3.0917 -7.1893 42 1 4.6398 -0.8889 0.9479 43 1 5.7038 0.0421 -0.1440 44 1 7.1726 -0.5606 1.6839 45 1 5.9081 -0.2182 2.9108 46 1 5.4605 2.9583 0.2544 47 1 4.7920 3.2068 1.8959 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:31 Heat of formation + Delta-G solvation = -93.543248 kcal Electronic energy + Delta-G solvation = -29015.229350 eV Core-core repulsion = 25132.900617 eV Total energy + Delta-G solvation = -3882.328733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49937 -38.17435 -38.07737 -37.09275 -37.07979 -36.10771 -33.77584 -33.20013 -31.13797 -30.29798 -28.02175 -26.99080 -26.47381 -25.38506 -23.76223 -22.49931 -22.11933 -19.86785 -19.52591 -18.94610 -18.22061 -17.89242 -17.32316 -16.99671 -16.71509 -16.45844 -15.96605 -15.81940 -15.42256 -15.32629 -15.05995 -14.68760 -14.61955 -14.11495 -14.07280 -13.77388 -13.33046 -13.25647 -13.15040 -13.11837 -13.11414 -12.97066 -12.84640 -12.82181 -12.66438 -12.49806 -12.37508 -12.27146 -12.13228 -12.03007 -11.94077 -11.86073 -11.65339 -11.33658 -11.21856 -10.74785 -10.31384 -9.62495 -8.76577 -7.81904 -5.34080 -0.92137 1.43112 1.46261 1.53254 1.55396 1.77883 2.05066 2.49890 2.64771 3.06113 3.30795 3.39213 3.58512 3.63311 3.71254 3.89338 3.99041 4.07001 4.15437 4.26244 4.32479 4.46427 4.49774 4.56975 4.61364 4.70947 4.79305 4.82768 4.87561 4.90379 4.97938 5.02614 5.09249 5.14961 5.32473 5.34782 5.41365 5.42838 5.60812 5.64665 5.71265 5.76416 6.28687 6.44743 7.12253 7.36295 7.84021 8.28585 9.20058 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011162 B = 0.004557 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2507.966917 B = 6142.335006 C = 7748.080343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.096 3.904 4 N -0.601 5.601 5 C 0.498 3.502 6 O -0.556 6.556 7 C 0.151 3.849 8 H 0.094 0.906 9 C -0.150 4.150 10 N -0.594 5.594 11 C 0.194 3.806 12 C -0.266 4.266 13 H 0.073 0.927 14 C -0.051 4.051 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.264 1.264 18 H -0.298 1.298 19 H -0.286 1.286 20 C 0.156 3.844 21 H 0.159 0.841 22 C -0.147 4.147 23 C -0.547 4.547 24 S 2.382 3.618 25 O -0.991 6.991 26 O -0.972 6.972 27 C -0.604 4.604 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.083 0.917 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.103 0.897 37 H 0.039 0.961 38 H 0.001 0.999 39 H -0.002 1.002 40 H 0.029 0.971 41 H 0.247 0.753 42 H 0.127 0.873 43 H 0.076 0.924 44 H 0.148 0.852 45 H 0.180 0.820 46 H 0.113 0.887 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.994 -9.270 21.213 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C -0.026 4.026 4 N -0.335 5.335 5 C 0.285 3.715 6 O -0.433 6.433 7 C 0.040 3.960 8 H 0.112 0.888 9 C -0.209 4.209 10 N -0.315 5.315 11 C 0.049 3.951 12 C -0.396 4.396 13 H 0.090 0.910 14 C -0.246 4.246 15 N -0.583 5.583 16 Si 0.798 3.202 17 H -0.188 1.188 18 H -0.225 1.225 19 H -0.212 1.212 20 C 0.051 3.949 21 H 0.177 0.823 22 C -0.186 4.186 23 C -0.681 4.681 24 S 2.571 3.429 25 O -0.989 6.989 26 O -0.969 6.969 27 C -0.735 4.735 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.065 0.935 36 H 0.122 0.878 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.017 0.983 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.146 0.854 43 H 0.095 0.905 44 H 0.166 0.834 45 H 0.198 0.802 46 H 0.131 0.869 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.446 -8.793 21.263 24.511 hybrid contribution 0.067 0.805 -1.546 1.744 sum -8.379 -7.988 19.717 22.864 Atomic orbital electron populations 1.21706 0.94093 1.02407 1.02540 1.22121 0.97021 0.96117 1.03234 1.22117 0.77201 0.98424 1.04867 1.48146 1.07762 1.72189 1.05358 1.22283 0.89149 0.74911 0.85133 1.90609 1.17207 1.50544 1.84983 1.20534 0.91298 0.97943 0.86217 0.88772 1.22375 0.99867 0.96261 1.02432 1.43828 1.37927 1.14034 1.35760 1.20366 0.89855 0.91459 0.93410 1.19586 1.37921 0.87623 0.94494 0.90964 1.25819 1.01495 1.01051 0.96212 1.70259 1.50333 1.31061 1.06609 0.85173 0.76714 0.80109 0.78239 1.18845 1.22490 1.21214 1.21667 0.92545 0.89500 0.91149 0.82345 1.22783 0.96783 1.00373 0.98645 1.30349 1.09380 1.19262 1.09069 1.08934 0.77878 0.82015 0.74097 1.93576 1.53313 1.85913 1.66063 1.93548 1.86806 1.81047 1.35489 1.30839 1.19421 1.09569 1.13693 0.92108 0.91207 0.92901 0.92226 0.89845 0.87312 0.90019 0.93500 0.87834 0.94190 0.98047 0.98331 0.95304 0.94350 0.85447 0.90527 0.83364 0.80207 0.86864 0.81698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.87 71.98 0.71 -0.68 16 2 C -0.15 -1.66 5.33 30.59 0.16 -1.49 16 3 C 0.10 1.35 4.82 86.38 0.42 1.77 16 4 N -0.60 -13.03 2.45 -793.98 -1.94 -14.97 16 5 C 0.50 17.04 5.95 87.66 0.52 17.56 16 6 O -0.56 -23.72 10.59 -3.06 -0.03 -23.75 16 7 C 0.15 5.76 2.28 44.25 0.10 5.86 16 8 H 0.09 3.34 6.70 -2.39 -0.02 3.33 16 9 C -0.15 -4.81 8.19 71.98 0.59 -4.22 16 10 N -0.59 -30.65 2.68 -706.96 -1.89 -32.54 16 11 C 0.19 10.67 7.67 127.77 0.98 11.65 16 12 C -0.27 -14.90 9.59 84.04 0.81 -14.09 16 13 H 0.07 3.85 7.82 -2.91 -0.02 3.83 16 14 C -0.05 -2.91 5.18 84.86 0.44 -2.47 16 15 N -0.94 -57.34 10.56 21.65 0.23 -57.11 16 16 Si 0.97 46.26 29.56 68.60 2.03 48.28 16 17 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 18 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 19 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 20 C 0.16 2.60 2.97 45.68 0.14 2.73 16 21 H 0.16 0.94 7.89 -2.39 -0.02 0.92 16 22 C -0.15 -2.50 5.80 31.59 0.18 -2.32 16 23 C -0.55 -7.31 7.31 72.68 0.53 -6.78 16 24 S 2.38 56.21 6.10 -56.49 -0.34 55.87 16 25 O -0.99 -36.12 18.14 -127.47 -2.31 -38.43 16 26 O -0.97 -26.21 18.15 -127.47 -2.31 -28.52 16 27 C -0.60 -12.99 6.57 72.38 0.48 -12.52 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.46 8.14 -2.38 -0.02 0.44 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.92 5.97 -2.39 -0.01 0.91 16 32 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.11 0.87 8.07 -2.39 -0.02 0.85 16 34 H 0.08 1.36 5.32 -2.39 -0.01 1.34 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.10 2.32 3.93 -2.39 -0.01 2.31 16 37 H 0.04 1.34 7.96 -2.38 -0.02 1.32 16 38 H 0.00 0.08 7.33 -2.38 -0.02 0.06 16 39 H 0.00 -0.14 7.30 -2.39 -0.02 -0.16 16 40 H 0.03 1.47 6.02 -2.39 -0.01 1.46 16 41 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.08 2.05 5.74 -2.39 -0.01 2.04 16 44 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.18 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.11 3.52 6.35 -2.38 -0.02 3.50 16 47 H 0.17 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -88.24 369.06 0.43 -87.80 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.96 Total: 8.38 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 6.05 Total: -5.00 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -3.61 Total: -104.62 kcal Atomic # 8 Polarization: -86.05 SS G_CDS: -4.66 Total: -90.71 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 56.21 SS G_CDS: -0.34 Total: 55.87 kcal Total: -88.24 0.43 -87.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.740 kcal (2) G-P(sol) polarization free energy of solvation -88.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds