Wall clock time and date at job start Tue Mar 31 2020 16:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47367 * 2 1 4 4 N 1.46493 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00309 * 263.99349 * 4 3 2 6 6 H 1.08002 * 120.00665 * 156.30524 * 5 4 3 7 7 C 1.38951 * 119.99881 * 336.30683 * 5 4 3 8 8 N 1.31409 * 119.99896 * 325.72388 * 7 5 4 9 9 Si 1.86805 * 120.00255 * 145.71619 * 7 5 4 10 10 H 1.48495 * 109.47017 * 94.98987 * 9 7 5 11 11 H 1.48495 * 109.47325 * 214.99397 * 9 7 5 12 12 H 1.48503 * 109.46908 * 334.99376 * 9 7 5 13 13 C 1.34777 * 120.00082 * 83.99361 * 4 3 2 14 14 O 1.21297 * 120.00101 * 185.95038 * 13 4 3 15 15 C 1.50693 * 119.99929 * 5.95378 * 13 4 3 16 16 C 1.53043 * 109.46189 * 190.93561 * 15 13 4 17 17 C 1.53189 * 109.31590 * 178.62829 * 16 15 13 18 18 N 1.46924 * 108.77573 * 54.63459 * 17 16 15 19 19 S 1.65594 * 120.63374 * 126.37005 * 18 17 16 20 20 O 1.42102 * 104.27514 * 333.92981 * 19 18 17 21 21 O 1.42101 * 104.28201 * 206.07166 * 19 18 17 22 22 C 1.81401 * 104.45074 * 89.99797 * 19 18 17 23 23 C 1.53005 * 109.47232 * 180.02562 * 22 19 18 24 24 C 1.46932 * 118.73916 * 306.64645 * 18 17 16 25 25 C 1.52756 * 109.00777 * 53.30486 * 24 18 17 26 26 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46596 * 300.00094 * 1 2 3 28 28 H 1.09003 * 109.46518 * 59.99888 * 1 2 3 29 29 H 1.08996 * 109.47010 * 240.00039 * 2 1 3 30 30 H 1.09004 * 109.46949 * 120.00415 * 2 1 3 31 31 H 1.08996 * 109.47024 * 60.00047 * 3 2 1 32 32 H 1.08999 * 109.46746 * 300.00225 * 3 2 1 33 33 H 0.97007 * 119.99962 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.46203 * 310.90743 * 15 13 4 35 35 H 1.09001 * 109.49754 * 58.67466 * 16 15 13 36 36 H 1.09000 * 109.49379 * 298.58282 * 16 15 13 37 37 H 1.09004 * 109.58895 * 294.84772 * 17 16 15 38 38 H 1.08991 * 109.70479 * 174.49290 * 17 16 15 39 39 H 1.08994 * 109.47597 * 300.00344 * 22 19 18 40 40 H 1.09001 * 109.46736 * 60.00433 * 22 19 18 41 41 H 1.09005 * 109.47084 * 300.00050 * 23 22 19 42 42 H 1.08992 * 109.47246 * 60.00284 * 23 22 19 43 43 H 1.09000 * 109.46951 * 180.02562 * 23 22 19 44 44 H 1.08992 * 109.58542 * 173.14619 * 24 18 17 45 45 H 1.09002 * 109.58341 * 293.56858 * 24 18 17 46 46 H 1.08999 * 109.56604 * 185.55011 * 25 24 18 47 47 H 1.09006 * 109.36068 * 65.50154 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5668 1.1816 6 1 5.2018 1.1971 1.2607 7 6 3.5828 2.1685 2.2770 8 7 2.7389 3.1598 2.0980 9 14 3.9658 1.5682 4.0040 10 1 5.0442 2.4037 4.5907 11 1 2.7467 1.6710 4.8456 12 1 4.4111 0.1526 3.9486 13 6 4.1795 1.3201 -1.1599 14 8 5.3875 1.2114 -1.1508 15 6 3.4326 1.3183 -2.4687 16 6 4.3793 0.8979 -3.5954 17 6 3.6084 0.8642 -4.9188 18 7 2.9665 2.1695 -5.1256 19 16 3.2081 3.0158 -6.5282 20 8 4.4729 2.5668 -6.9950 21 8 3.0030 4.3725 -6.1588 22 6 1.8847 2.4497 -7.6322 23 6 2.0015 3.1674 -8.9784 24 6 2.1110 2.7125 -4.0616 25 6 2.8942 2.7230 -2.7501 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 2.3152 3.5801 2.8628 34 1 2.6015 0.6156 -2.4117 35 1 4.7805 -0.0930 -3.3827 36 1 5.1976 1.6142 -3.6691 37 1 2.8473 0.0849 -4.8786 38 1 4.2961 0.6611 -5.7396 39 1 1.9743 1.3742 -7.7852 40 1 0.9168 2.6734 -7.1835 41 1 1.9120 4.2429 -8.8257 42 1 2.9693 2.9433 -9.4268 43 1 1.2060 2.8275 -9.6415 44 1 1.8130 3.7296 -4.3158 45 1 1.2253 2.0871 -3.9500 46 1 2.2385 3.0311 -1.9358 47 1 3.7266 3.4220 -2.8319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098022272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:14 Heat of formation + Delta-G solvation = -106.796395 kcal Electronic energy + Delta-G solvation = -28474.846182 eV Core-core repulsion = 24591.942749 eV Total energy + Delta-G solvation = -3882.903432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.45423 -37.40848 -37.23584 -35.99521 -35.30200 -33.44096 -32.96348 -32.10298 -31.26739 -30.81648 -26.19944 -25.43540 -24.35203 -23.77143 -23.15412 -21.22627 -20.46568 -19.08802 -18.56637 -17.62185 -16.90149 -16.55940 -16.32038 -16.07511 -15.03370 -14.77517 -14.61119 -14.27646 -14.24050 -14.16737 -13.81134 -13.62354 -13.26652 -13.20593 -13.12255 -12.80606 -12.32812 -12.25579 -12.16690 -12.14299 -11.89868 -11.81500 -11.73868 -11.52571 -11.36350 -11.10998 -11.02621 -10.87211 -10.81301 -10.63917 -10.42900 -10.38373 -10.17806 -10.06528 -9.80970 -9.04551 -8.89717 -8.26159 -7.55360 -6.41309 -3.79636 0.10376 2.53562 3.14595 3.27062 3.34603 3.74070 3.87671 3.95352 4.16155 4.27567 4.50028 4.65144 4.78887 4.85039 4.93088 5.12570 5.22401 5.29144 5.34508 5.35604 5.40885 5.51574 5.52150 5.55811 5.62843 5.66092 5.79866 5.83601 5.89862 5.96624 6.15035 6.15698 6.25684 6.34013 6.43187 6.46895 6.54033 6.58486 6.73113 6.77151 6.91581 7.24513 7.61349 8.21001 8.52146 9.21070 9.47128 10.05318 10.62554 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.003233 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.966205 B = 8657.982600 C = 8973.646272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.139 4.139 3 C 0.089 3.911 4 N -0.438 5.438 5 C -0.317 4.317 6 H 0.098 0.902 7 C 0.040 3.960 8 N -0.851 5.851 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.282 1.282 12 H -0.269 1.269 13 C 0.455 3.545 14 O -0.585 6.585 15 C -0.098 4.098 16 C -0.107 4.107 17 C 0.118 3.882 18 N -0.997 5.997 19 S 2.606 3.394 20 O -0.953 6.953 21 O -0.953 6.953 22 C -0.635 4.635 23 C -0.147 4.147 24 C 0.120 3.880 25 C -0.124 4.124 26 H 0.046 0.954 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.056 0.944 33 H 0.267 0.733 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.068 0.932 46 H 0.090 0.910 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 -3.509 -16.548 19.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C -0.035 4.035 4 N -0.156 5.156 5 C -0.444 4.444 6 H 0.115 0.885 7 C -0.164 4.164 8 N -0.489 5.489 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.208 1.208 12 H -0.194 1.194 13 C 0.244 3.756 14 O -0.470 6.470 15 C -0.120 4.120 16 C -0.146 4.146 17 C -0.007 4.007 18 N -0.836 5.836 19 S 2.699 3.301 20 O -0.944 6.944 21 O -0.943 6.943 22 C -0.764 4.764 23 C -0.206 4.206 24 C -0.004 4.004 25 C -0.163 4.163 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.110 0.890 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.623 -2.804 -16.573 18.891 hybrid contribution -0.705 -0.702 0.891 1.336 sum -9.328 -3.506 -15.682 18.580 Atomic orbital electron populations 1.21676 0.96337 1.00668 1.01536 1.21962 0.94829 0.99334 1.01690 1.21912 0.82072 0.94839 1.04690 1.43566 1.04527 1.62223 1.05270 1.19450 1.00720 1.37729 0.86537 0.88470 1.25098 0.97456 0.93935 0.99951 1.70106 1.29996 1.16849 1.31926 0.86346 0.78013 0.80126 0.82866 1.20466 1.20781 1.19362 1.20091 0.87713 0.83112 0.84712 1.90509 1.14568 1.54829 1.87051 1.21155 0.98676 0.97624 0.94526 1.21603 0.98003 1.03054 0.91981 1.21559 0.96375 0.83043 0.99687 1.57677 1.61955 1.32827 1.31151 1.05181 0.76162 0.74435 0.74309 1.93588 1.37147 1.82267 1.81371 1.93594 1.86910 1.32694 1.81084 1.30605 1.21005 1.11892 1.12894 1.21499 1.04161 1.00671 0.94221 1.21443 0.92417 0.99292 0.87298 1.21846 1.01057 0.96898 0.96543 0.93474 0.92747 0.93174 0.93187 0.91808 0.86777 0.92559 0.92272 0.90126 0.90523 0.90593 0.91567 0.89012 0.85193 0.85137 0.90987 0.91013 0.90196 0.88858 0.91361 0.89211 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.14 -2.41 6.08 -26.73 -0.16 -2.57 16 3 C 0.09 1.82 4.56 -4.05 -0.02 1.81 16 4 N -0.44 -10.74 2.61 -114.82 -0.30 -11.04 16 5 C -0.32 -8.71 9.13 -14.93 -0.14 -8.85 16 6 H 0.10 2.87 7.55 -52.49 -0.40 2.47 16 7 C 0.04 1.05 4.70 -17.47 -0.08 0.96 16 8 N -0.85 -22.17 11.46 55.50 0.64 -21.54 16 9 Si 0.90 20.18 29.67 -169.99 -5.04 15.14 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 12 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 13 C 0.46 10.84 6.82 -10.99 -0.07 10.77 16 14 O -0.59 -16.25 15.70 5.54 0.09 -16.16 16 15 C -0.10 -1.73 1.66 -91.73 -0.15 -1.88 16 16 C -0.11 -1.73 4.70 -26.61 -0.12 -1.85 16 17 C 0.12 1.41 6.43 -3.71 -0.02 1.38 16 18 N -1.00 -11.89 3.23 -113.77 -0.37 -12.25 16 19 S 2.61 30.22 5.45 -107.50 -0.59 29.63 16 20 O -0.95 -13.93 16.59 -57.54 -0.95 -14.88 16 21 O -0.95 -14.06 16.58 -57.54 -0.95 -15.01 16 22 C -0.64 -4.47 6.90 37.16 0.26 -4.22 16 23 C -0.15 -0.98 9.92 37.16 0.37 -0.62 16 24 C 0.12 1.46 6.40 -3.93 -0.03 1.43 16 25 C -0.12 -2.03 5.02 -26.84 -0.13 -2.16 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.82 6.88 -51.93 -0.36 0.46 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.11 2.62 5.14 -51.93 -0.27 2.35 16 32 H 0.06 1.03 4.51 -51.93 -0.23 0.79 16 33 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 34 H 0.08 1.26 6.22 -51.93 -0.32 0.94 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.08 1.42 8.02 -51.93 -0.42 1.00 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.02 6.86 -51.93 -0.36 0.66 16 39 H 0.13 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 1.07 6.85 -51.93 -0.36 0.72 16 45 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 46 H 0.09 1.51 5.69 -51.93 -0.30 1.21 16 47 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 376.73 15.07 5.68 5.68 Total: -1.00 -34.75 376.73 -9.38 -44.13 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.63 Total: 3.71 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: 0.06 Total: -7.40 kcal Atomic # 7 Polarization: -44.80 SS G_CDS: -0.03 Total: -44.83 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.82 Total: -46.06 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.04 Total: 15.14 kcal Atomic # 16 Polarization: 30.22 SS G_CDS: -0.59 Total: 29.63 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.75 -9.38 -44.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.667 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds