Wall clock time and date at job start Tue Mar 31 2020 16:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47367 * 2 1 4 4 N 1.46493 * 109.47061 * 179.97438 * 3 2 1 5 5 C 1.37097 * 120.00309 * 263.99349 * 4 3 2 6 6 H 1.08002 * 120.00665 * 156.30524 * 5 4 3 7 7 C 1.38951 * 119.99881 * 336.30683 * 5 4 3 8 8 N 1.31409 * 119.99896 * 325.72388 * 7 5 4 9 9 Si 1.86805 * 120.00255 * 145.71619 * 7 5 4 10 10 H 1.48495 * 109.47017 * 94.98987 * 9 7 5 11 11 H 1.48495 * 109.47325 * 214.99397 * 9 7 5 12 12 H 1.48503 * 109.46908 * 334.99376 * 9 7 5 13 13 C 1.34777 * 120.00082 * 83.99361 * 4 3 2 14 14 O 1.21297 * 120.00101 * 185.95038 * 13 4 3 15 15 C 1.50693 * 119.99929 * 5.95378 * 13 4 3 16 16 C 1.53043 * 109.46189 * 190.93561 * 15 13 4 17 17 C 1.53189 * 109.31590 * 178.62829 * 16 15 13 18 18 N 1.46924 * 108.77573 * 54.63459 * 17 16 15 19 19 S 1.65594 * 120.63374 * 126.37005 * 18 17 16 20 20 O 1.42102 * 104.27514 * 333.92981 * 19 18 17 21 21 O 1.42101 * 104.28201 * 206.07166 * 19 18 17 22 22 C 1.81401 * 104.45074 * 89.99797 * 19 18 17 23 23 C 1.53005 * 109.47232 * 180.02562 * 22 19 18 24 24 C 1.46932 * 118.73916 * 306.64645 * 18 17 16 25 25 C 1.52756 * 109.00777 * 53.30486 * 24 18 17 26 26 H 1.08997 * 109.47012 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46596 * 300.00094 * 1 2 3 28 28 H 1.09003 * 109.46518 * 59.99888 * 1 2 3 29 29 H 1.08996 * 109.47010 * 240.00039 * 2 1 3 30 30 H 1.09004 * 109.46949 * 120.00415 * 2 1 3 31 31 H 1.08996 * 109.47024 * 60.00047 * 3 2 1 32 32 H 1.08999 * 109.46746 * 300.00225 * 3 2 1 33 33 H 0.97007 * 119.99962 * 180.02562 * 8 7 5 34 34 H 1.08993 * 109.46203 * 310.90743 * 15 13 4 35 35 H 1.09001 * 109.49754 * 58.67466 * 16 15 13 36 36 H 1.09000 * 109.49379 * 298.58282 * 16 15 13 37 37 H 1.09004 * 109.58895 * 294.84772 * 17 16 15 38 38 H 1.08991 * 109.70479 * 174.49290 * 17 16 15 39 39 H 1.08994 * 109.47597 * 300.00344 * 22 19 18 40 40 H 1.09001 * 109.46736 * 60.00433 * 22 19 18 41 41 H 1.09005 * 109.47084 * 300.00050 * 23 22 19 42 42 H 1.08992 * 109.47246 * 60.00284 * 23 22 19 43 43 H 1.09000 * 109.46951 * 180.02562 * 23 22 19 44 44 H 1.08992 * 109.58542 * 173.14619 * 24 18 17 45 45 H 1.09002 * 109.58341 * 293.56858 * 24 18 17 46 46 H 1.08999 * 109.56604 * 185.55011 * 25 24 18 47 47 H 1.09006 * 109.36068 * 65.50154 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1901 1.5668 1.1816 6 1 5.2018 1.1971 1.2607 7 6 3.5828 2.1685 2.2770 8 7 2.7389 3.1598 2.0980 9 14 3.9658 1.5682 4.0040 10 1 5.0442 2.4037 4.5907 11 1 2.7467 1.6710 4.8456 12 1 4.4111 0.1526 3.9486 13 6 4.1795 1.3201 -1.1599 14 8 5.3875 1.2114 -1.1508 15 6 3.4326 1.3183 -2.4687 16 6 4.3793 0.8979 -3.5954 17 6 3.6084 0.8642 -4.9188 18 7 2.9665 2.1695 -5.1256 19 16 3.2081 3.0158 -6.5282 20 8 4.4729 2.5668 -6.9950 21 8 3.0030 4.3725 -6.1588 22 6 1.8847 2.4497 -7.6322 23 6 2.0015 3.1674 -8.9784 24 6 2.1110 2.7125 -4.0616 25 6 2.8942 2.7230 -2.7501 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3632 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 2.3152 3.5801 2.8628 34 1 2.6015 0.6156 -2.4117 35 1 4.7805 -0.0930 -3.3827 36 1 5.1976 1.6142 -3.6691 37 1 2.8473 0.0849 -4.8786 38 1 4.2961 0.6611 -5.7396 39 1 1.9743 1.3742 -7.7852 40 1 0.9168 2.6734 -7.1835 41 1 1.9120 4.2429 -8.8257 42 1 2.9693 2.9433 -9.4268 43 1 1.2060 2.8275 -9.6415 44 1 1.8130 3.7296 -4.3158 45 1 1.2253 2.0871 -3.9500 46 1 2.2385 3.0311 -1.9358 47 1 3.7266 3.4220 -2.8319 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098022272.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:14 Heat of formation + Delta-G solvation = -132.031549 kcal Electronic energy + Delta-G solvation = -28475.940460 eV Core-core repulsion = 24591.942749 eV Total energy + Delta-G solvation = -3883.997711 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.05404 -38.75438 -38.22239 -37.13615 -36.97617 -34.63878 -33.97710 -33.43098 -32.95540 -32.02116 -27.89757 -26.85502 -25.51804 -24.71739 -24.32283 -22.59292 -21.80904 -20.51483 -19.63715 -18.86497 -18.66165 -17.87134 -17.39137 -17.16634 -16.67131 -16.23920 -15.80619 -15.75877 -15.48011 -15.23070 -15.05434 -14.79460 -14.60939 -14.38694 -14.02712 -13.76212 -13.58061 -13.45977 -13.38760 -13.36056 -13.18153 -13.17421 -12.91715 -12.89756 -12.56710 -12.44744 -12.35967 -12.18974 -12.15143 -11.99741 -11.93328 -11.71193 -11.54091 -11.43443 -11.28895 -10.80659 -10.27865 -9.86317 -9.50356 -8.42308 -5.88776 -0.72856 1.31136 1.39934 1.52901 1.66347 2.02793 2.29964 2.94269 2.95939 3.11878 3.15641 3.57689 3.78625 3.88230 3.95054 3.97847 4.09236 4.16932 4.22664 4.37230 4.42722 4.45409 4.46234 4.58642 4.67957 4.73247 4.79047 4.84217 4.87816 4.89285 4.90613 4.98173 5.04299 5.13140 5.19224 5.24462 5.29276 5.36946 5.42114 5.44490 5.53045 5.64123 5.67321 6.17304 6.54723 7.21414 7.54761 8.13609 8.60134 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021718 B = 0.003233 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.966205 B = 8657.982600 C = 8973.646272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C 0.088 3.912 4 N -0.448 5.448 5 C -0.360 4.360 6 H 0.059 0.941 7 C 0.016 3.984 8 N -0.864 5.864 9 Si 0.962 3.038 10 H -0.280 1.280 11 H -0.261 1.261 12 H -0.273 1.273 13 C 0.436 3.564 14 O -0.642 6.642 15 C -0.084 4.084 16 C -0.109 4.109 17 C 0.126 3.874 18 N -1.002 6.002 19 S 2.595 3.405 20 O -0.997 6.997 21 O -0.997 6.997 22 C -0.595 4.595 23 C -0.162 4.162 24 C 0.126 3.874 25 C -0.123 4.123 26 H 0.069 0.931 27 H 0.045 0.955 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.276 0.724 34 H 0.115 0.885 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.161 0.839 40 H 0.161 0.839 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.116 0.884 46 H 0.083 0.917 47 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.035 -5.024 -18.412 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.171 4.171 3 C -0.035 4.035 4 N -0.165 5.165 5 C -0.487 4.487 6 H 0.077 0.923 7 C -0.188 4.188 8 N -0.501 5.501 9 Si 0.786 3.214 10 H -0.206 1.206 11 H -0.186 1.186 12 H -0.198 1.198 13 C 0.227 3.773 14 O -0.531 6.531 15 C -0.106 4.106 16 C -0.148 4.148 17 C 0.001 3.999 18 N -0.840 5.840 19 S 2.694 3.306 20 O -0.987 6.987 21 O -0.987 6.987 22 C -0.729 4.729 23 C -0.221 4.221 24 C 0.002 3.998 25 C -0.163 4.163 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.133 0.867 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.131 0.869 38 H 0.116 0.884 39 H 0.179 0.821 40 H 0.179 0.821 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.126 0.874 44 H 0.117 0.883 45 H 0.134 0.866 46 H 0.102 0.898 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -12.891 -4.289 -18.394 22.867 hybrid contribution 0.657 -0.159 1.450 1.600 sum -12.234 -4.448 -16.944 21.367 Atomic orbital electron populations 1.21631 0.92905 1.02440 1.02412 1.21884 0.97652 0.96519 1.01069 1.22074 0.79586 0.97253 1.04621 1.43831 1.06250 1.61677 1.04719 1.19278 1.00363 1.39960 0.89118 0.92280 1.25742 0.97101 0.93289 1.02703 1.70129 1.30018 1.16637 1.33311 0.85439 0.78412 0.79029 0.78557 1.20612 1.18566 1.19834 1.21274 0.87609 0.81755 0.86701 1.90457 1.17295 1.57176 1.88143 1.21119 0.99051 0.99333 0.91068 1.21605 0.97315 1.01456 0.94453 1.21590 0.97344 0.84248 0.96715 1.57582 1.62146 1.32556 1.31723 1.05326 0.76896 0.73561 0.74807 1.93531 1.40910 1.82429 1.81842 1.93535 1.87638 1.35450 1.82106 1.30269 1.18477 1.13423 1.10759 1.21714 1.05223 1.00787 0.94409 1.21494 0.92781 1.01059 0.84503 1.21825 1.00108 0.94879 0.99465 0.91248 0.93532 0.90682 0.91919 0.94423 0.89185 0.90100 0.91423 0.86716 0.90933 0.94860 0.86904 0.88357 0.82140 0.82131 0.91264 0.91236 0.87373 0.88298 0.86610 0.89838 0.95007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.91 71.98 0.71 -2.52 16 2 C -0.13 -4.38 6.08 30.60 0.19 -4.19 16 3 C 0.09 3.57 4.56 86.38 0.39 3.96 16 4 N -0.45 -22.91 2.61 -635.56 -1.66 -24.57 16 5 C -0.36 -20.91 9.13 84.04 0.77 -20.14 16 6 H 0.06 3.80 7.55 -2.91 -0.02 3.78 16 7 C 0.02 0.86 4.70 84.93 0.40 1.26 16 8 N -0.86 -45.65 11.46 21.66 0.25 -45.40 16 9 Si 0.96 42.29 29.67 68.60 2.04 44.32 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 12 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 13 C 0.44 21.92 6.82 87.65 0.60 22.51 16 14 O -0.64 -38.65 15.70 -3.08 -0.05 -38.70 16 15 C -0.08 -2.98 1.66 -11.51 -0.02 -3.00 16 16 C -0.11 -3.58 4.70 30.67 0.14 -3.43 16 17 C 0.13 2.67 6.43 86.36 0.56 3.23 16 18 N -1.00 -21.50 3.23 -513.86 -1.66 -23.16 16 19 S 2.59 56.09 5.45 -56.49 -0.31 55.78 16 20 O -1.00 -29.03 16.59 -127.65 -2.12 -31.14 16 21 O -1.00 -29.23 16.58 -127.65 -2.12 -31.35 16 22 C -0.60 -5.40 6.90 71.98 0.50 -4.90 16 23 C -0.16 -1.54 9.92 71.98 0.71 -0.83 16 24 C 0.13 2.70 6.40 86.22 0.55 3.26 16 25 C -0.12 -4.03 5.02 30.53 0.15 -3.88 16 26 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.06 1.89 6.88 -2.39 -0.02 1.87 16 30 H 0.04 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.09 4.15 5.14 -2.39 -0.01 4.14 16 32 H 0.08 2.83 4.51 -2.39 -0.01 2.82 16 33 H 0.28 13.45 8.31 -92.70 -0.77 12.68 16 34 H 0.11 3.25 6.22 -2.39 -0.01 3.23 16 35 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.03 1.34 8.02 -2.39 -0.02 1.32 16 37 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.10 2.00 6.86 -2.39 -0.02 1.98 16 39 H 0.16 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.16 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.10 2.05 6.85 -2.39 -0.02 2.04 16 45 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.08 2.79 5.69 -2.39 -0.01 2.77 16 47 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 Total: -1.00 -85.19 376.73 0.98 -84.21 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.96 Total: 18.69 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: 5.65 Total: -8.68 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -3.07 Total: -93.13 kcal Atomic # 8 Polarization: -96.91 SS G_CDS: -4.28 Total: -101.19 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.04 Total: 44.32 kcal Atomic # 16 Polarization: 56.09 SS G_CDS: -0.31 Total: 55.78 kcal Total: -85.19 0.98 -84.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022272.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.824 kcal (2) G-P(sol) polarization free energy of solvation -85.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds