Wall clock time and date at job start Tue Mar 31 2020 16:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 N 1.46499 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99763 * 263.43009 * 4 3 2 6 6 H 1.08000 * 119.99953 * 188.12089 * 5 4 3 7 7 C 1.38951 * 120.00320 * 8.12542 * 5 4 3 8 8 N 1.31411 * 119.99648 * 25.93697 * 7 5 4 9 9 Si 1.86803 * 120.00145 * 205.93938 * 7 5 4 10 10 H 1.48500 * 109.46821 * 84.98702 * 9 7 5 11 11 H 1.48492 * 109.46918 * 204.98485 * 9 7 5 12 12 H 1.48493 * 109.46881 * 324.98868 * 9 7 5 13 13 C 1.34775 * 120.00375 * 83.43482 * 4 3 2 14 14 O 1.21293 * 120.00030 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99472 * 359.97438 * 13 4 3 16 16 C 1.53010 * 109.46688 * 179.97438 * 15 13 4 17 17 C 1.52998 * 109.46739 * 180.02562 * 16 15 13 18 18 S 1.81397 * 109.46852 * 180.02562 * 17 16 15 19 19 O 1.42100 * 110.54364 * 291.62328 * 18 17 16 20 20 O 1.42097 * 110.54594 * 68.37635 * 18 17 16 21 21 N 1.65600 * 104.44862 * 179.97438 * 18 17 16 22 22 C 1.47026 * 125.64958 * 269.68778 * 21 18 17 23 23 C 1.54316 * 107.27450 * 180.96787 * 22 21 18 24 24 C 1.55150 * 102.86590 * 22.53262 * 23 22 21 25 25 C 1.47433 * 125.64843 * 89.99991 * 21 18 17 26 26 H 1.09004 * 109.47575 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46882 * 299.99752 * 1 2 3 28 28 H 1.08996 * 109.47623 * 59.99964 * 1 2 3 29 29 H 1.08998 * 109.46919 * 239.99851 * 2 1 3 30 30 H 1.09004 * 109.47114 * 120.00390 * 2 1 3 31 31 H 1.09000 * 109.46615 * 60.00171 * 3 2 1 32 32 H 1.08999 * 109.46916 * 299.99708 * 3 2 1 33 33 H 0.96999 * 119.99765 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47102 * 60.00451 * 15 13 4 35 35 H 1.08993 * 109.47201 * 300.00031 * 15 13 4 36 36 H 1.08998 * 109.46779 * 300.00379 * 16 15 13 37 37 H 1.08998 * 109.46973 * 60.00381 * 16 15 13 38 38 H 1.09002 * 109.47031 * 299.99754 * 17 16 15 39 39 H 1.08998 * 109.47380 * 60.00259 * 17 16 15 40 40 H 1.08994 * 109.88229 * 300.51467 * 22 21 18 41 41 H 1.09006 * 109.88060 * 61.68049 * 22 21 18 42 42 H 1.09002 * 110.92435 * 264.10918 * 23 22 21 43 43 H 1.09002 * 110.58495 * 140.78815 * 23 22 21 44 44 H 1.08999 * 111.00586 * 206.23073 * 24 23 22 45 45 H 1.08997 * 111.00738 * 82.37328 * 24 23 22 46 46 H 1.09000 * 110.36363 * 274.67231 * 25 21 18 47 47 H 1.09000 * 110.36237 * 36.88401 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1909 1.5781 1.1787 6 1 5.2628 1.7098 1.1678 7 6 3.5072 1.5460 2.3879 8 7 2.3627 0.9066 2.4787 9 14 4.2148 2.4116 3.8843 10 1 3.8192 3.8428 3.8613 11 1 3.6916 1.7733 5.1188 12 1 5.6959 2.3070 3.8623 13 6 4.1784 1.3091 -1.1604 14 8 5.3914 1.3086 -1.1608 15 6 3.4243 1.1596 -2.4566 16 6 4.4182 1.0275 -3.6124 17 6 3.6526 0.8763 -4.9285 18 16 4.8308 0.7189 -6.2987 19 8 5.5275 1.9409 -6.5001 20 8 5.5276 -0.5168 -6.2178 21 7 3.8799 0.5635 -7.6455 22 6 3.3937 -0.7043 -8.2094 23 6 2.5708 -0.3599 -9.4687 24 6 3.1179 1.0360 -9.8678 25 6 3.3861 1.6730 -8.4814 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.8851 0.8845 3.3227 34 1 2.7974 2.0369 -2.6155 35 1 2.7980 0.2687 -2.4118 36 1 5.0442 1.9187 -3.6569 37 1 5.0455 0.1503 -3.4538 38 1 3.0263 -0.0148 -4.8841 39 1 3.0256 1.7536 -5.0869 40 1 4.2383 -1.3386 -8.4782 41 1 2.7606 -1.2143 -7.4833 42 1 1.5074 -0.3054 -9.2359 43 1 2.7569 -1.0874 -10.2589 44 1 2.3707 1.6049 -10.4211 45 1 4.0406 0.9448 -10.4409 46 1 2.4640 2.0796 -8.0659 47 1 4.1424 2.4539 -8.5606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098022430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:21 Heat of formation + Delta-G solvation = -106.890790 kcal Electronic energy + Delta-G solvation = -27200.213764 eV Core-core repulsion = 23317.306239 eV Total energy + Delta-G solvation = -3882.907526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.74760 -38.61792 -37.14702 -35.97460 -35.53916 -34.19623 -32.36479 -31.31515 -31.25266 -29.31557 -28.25995 -25.76748 -24.40899 -22.99866 -21.92790 -21.56114 -20.75316 -19.06353 -18.84148 -17.77196 -17.01025 -16.86395 -16.34155 -16.03736 -15.72158 -15.09945 -14.52692 -14.17375 -14.12507 -14.02288 -13.69999 -13.66197 -13.61542 -12.99839 -12.93462 -12.52718 -12.46295 -12.16197 -12.09500 -12.02964 -11.82339 -11.68357 -11.65651 -11.52850 -11.49700 -11.34071 -11.08666 -10.96839 -10.92877 -10.69825 -10.61723 -10.38431 -10.31774 -10.08515 -9.65919 -9.23779 -8.87446 -8.36715 -7.75716 -6.37383 -3.77500 0.13372 2.53345 3.15530 3.26031 3.30972 3.75479 3.86566 3.90380 4.11258 4.16078 4.38576 4.53878 4.57856 4.79735 4.93054 4.97181 5.05031 5.10923 5.19843 5.26542 5.38089 5.46992 5.50491 5.56281 5.59118 5.67004 5.73840 5.76797 5.81007 5.88333 5.94496 6.08016 6.11540 6.17185 6.33107 6.37017 6.39697 6.59338 6.77980 6.82994 7.26597 7.46512 7.70929 8.08916 8.50382 9.18068 9.44103 9.99204 10.63173 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.002590 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.691143 B =10810.009488 C =11614.416291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.126 4.126 3 C 0.125 3.875 4 N -0.442 5.442 5 C -0.309 4.309 6 H 0.104 0.896 7 C 0.031 3.969 8 N -0.863 5.863 9 Si 0.917 3.083 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.438 3.562 14 O -0.594 6.594 15 C -0.121 4.121 16 C -0.093 4.093 17 C -0.622 4.622 18 S 2.623 3.377 19 O -0.952 6.952 20 O -0.951 6.951 21 N -1.018 6.018 22 C 0.118 3.882 23 C -0.129 4.129 24 C -0.130 4.130 25 C 0.112 3.888 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.036 0.964 29 H 0.031 0.969 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.031 0.969 33 H 0.267 0.733 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.976 -1.182 -20.736 22.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.165 4.165 3 C 0.001 3.999 4 N -0.159 5.159 5 C -0.436 4.436 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.503 5.503 9 Si 0.744 3.256 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.195 1.195 13 C 0.226 3.774 14 O -0.479 6.479 15 C -0.162 4.162 16 C -0.132 4.132 17 C -0.752 4.752 18 S 2.719 3.281 19 O -0.942 6.942 20 O -0.941 6.941 21 N -0.856 5.856 22 C -0.008 4.008 23 C -0.168 4.168 24 C -0.169 4.169 25 C -0.013 4.013 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.049 0.951 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.100 0.900 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.524 -1.214 -20.486 21.534 hybrid contribution -0.796 0.331 1.100 1.398 sum -7.320 -0.883 -19.386 20.741 Atomic orbital electron populations 1.21606 0.97282 1.00072 1.00562 1.21907 0.93973 0.98334 1.02252 1.21522 0.80746 0.96845 1.00775 1.43826 1.05280 1.61207 1.05620 1.19731 0.94303 1.47391 0.82194 0.87794 1.25166 0.96496 0.96698 0.98812 1.70109 1.16799 1.36773 1.26607 0.86083 0.79603 0.79694 0.80229 1.20426 1.21180 1.19505 1.19901 0.88010 0.84413 0.85070 1.90519 1.13967 1.56531 1.86924 1.21504 0.98266 1.03015 0.93426 1.21025 0.97712 1.04684 0.89793 1.30653 1.17113 1.11459 1.16002 1.04706 0.74895 0.74258 0.74196 1.93583 1.69546 1.46801 1.84274 1.93587 1.69564 1.44993 1.85983 1.58796 1.70611 1.13350 1.42831 1.21722 0.98131 0.85346 0.95564 1.22640 0.99818 0.97450 0.96924 1.22762 1.01799 0.96051 0.96263 1.22068 0.99464 0.89408 0.90334 0.94053 0.92665 0.94507 0.95068 0.88122 0.88000 0.95061 0.92308 0.90385 0.89885 0.89822 0.89781 0.85135 0.85140 0.90901 0.91605 0.90530 0.90155 0.89961 0.90550 0.91529 0.89731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.13 -2.51 5.67 -26.73 -0.15 -2.66 16 3 C 0.12 2.68 4.35 -4.04 -0.02 2.67 16 4 N -0.44 -11.08 2.64 -114.81 -0.30 -11.38 16 5 C -0.31 -8.48 9.42 -14.93 -0.14 -8.62 16 6 H 0.10 3.06 7.31 -52.49 -0.38 2.67 16 7 C 0.03 0.80 4.88 -17.47 -0.09 0.71 16 8 N -0.86 -21.49 8.70 55.50 0.48 -21.01 16 9 Si 0.92 20.34 29.63 -169.99 -5.04 15.31 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.44 10.60 7.58 -10.98 -0.08 10.52 16 14 O -0.59 -16.54 15.57 5.55 0.09 -16.45 16 15 C -0.12 -2.16 4.31 -27.88 -0.12 -2.28 16 16 C -0.09 -1.51 4.51 -26.73 -0.12 -1.63 16 17 C -0.62 -7.08 6.18 37.16 0.23 -6.85 16 18 S 2.62 33.56 5.65 -107.50 -0.61 32.95 16 19 O -0.95 -15.02 17.28 -57.54 -0.99 -16.01 16 20 O -0.95 -15.21 17.60 -57.54 -1.01 -16.22 16 21 N -1.02 -9.75 3.62 -111.41 -0.40 -10.15 16 22 C 0.12 0.92 6.89 -3.07 -0.02 0.90 16 23 C -0.13 -0.69 6.95 -24.90 -0.17 -0.87 16 24 C -0.13 -0.73 7.08 -24.58 -0.17 -0.90 16 25 C 0.11 0.85 7.08 -2.52 -0.02 0.84 16 26 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.59 6.44 -51.93 -0.33 0.25 16 30 H 0.10 2.35 6.40 -51.93 -0.33 2.02 16 31 H 0.10 2.38 5.83 -51.93 -0.30 2.07 16 32 H 0.03 0.58 6.71 -51.93 -0.35 0.23 16 33 H 0.27 6.33 8.31 -40.82 -0.34 5.99 16 34 H 0.08 1.23 7.42 -51.93 -0.39 0.84 16 35 H 0.08 1.36 6.39 -51.93 -0.33 1.03 16 36 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 37 H 0.08 1.46 8.10 -51.93 -0.42 1.04 16 38 H 0.13 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.13 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.08 0.70 7.66 -51.93 -0.40 0.30 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -34.42 383.19 -10.39 -44.80 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.87 Total: 2.42 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -0.51 Total: -10.02 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.22 Total: -42.55 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -1.92 Total: -48.68 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.04 Total: 15.31 kcal Atomic # 16 Polarization: 33.56 SS G_CDS: -0.61 Total: 32.95 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.42 -10.39 -44.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.089 kcal (2) G-P(sol) polarization free energy of solvation -34.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds