Wall clock time and date at job start Tue Mar 31 2020 16:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47117 * 2 1 4 4 N 1.46499 * 109.46825 * 180.02562 * 3 2 1 5 5 C 1.37101 * 119.99763 * 263.43009 * 4 3 2 6 6 H 1.08000 * 119.99953 * 188.12089 * 5 4 3 7 7 C 1.38951 * 120.00320 * 8.12542 * 5 4 3 8 8 N 1.31411 * 119.99648 * 25.93697 * 7 5 4 9 9 Si 1.86803 * 120.00145 * 205.93938 * 7 5 4 10 10 H 1.48500 * 109.46821 * 84.98702 * 9 7 5 11 11 H 1.48492 * 109.46918 * 204.98485 * 9 7 5 12 12 H 1.48493 * 109.46881 * 324.98868 * 9 7 5 13 13 C 1.34775 * 120.00375 * 83.43482 * 4 3 2 14 14 O 1.21293 * 120.00030 * 180.02562 * 13 4 3 15 15 C 1.50703 * 119.99472 * 359.97438 * 13 4 3 16 16 C 1.53010 * 109.46688 * 179.97438 * 15 13 4 17 17 C 1.52998 * 109.46739 * 180.02562 * 16 15 13 18 18 S 1.81397 * 109.46852 * 180.02562 * 17 16 15 19 19 O 1.42100 * 110.54364 * 291.62328 * 18 17 16 20 20 O 1.42097 * 110.54594 * 68.37635 * 18 17 16 21 21 N 1.65600 * 104.44862 * 179.97438 * 18 17 16 22 22 C 1.47026 * 125.64958 * 269.68778 * 21 18 17 23 23 C 1.54316 * 107.27450 * 180.96787 * 22 21 18 24 24 C 1.55150 * 102.86590 * 22.53262 * 23 22 21 25 25 C 1.47433 * 125.64843 * 89.99991 * 21 18 17 26 26 H 1.09004 * 109.47575 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46882 * 299.99752 * 1 2 3 28 28 H 1.08996 * 109.47623 * 59.99964 * 1 2 3 29 29 H 1.08998 * 109.46919 * 239.99851 * 2 1 3 30 30 H 1.09004 * 109.47114 * 120.00390 * 2 1 3 31 31 H 1.09000 * 109.46615 * 60.00171 * 3 2 1 32 32 H 1.08999 * 109.46916 * 299.99708 * 3 2 1 33 33 H 0.96999 * 119.99765 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47102 * 60.00451 * 15 13 4 35 35 H 1.08993 * 109.47201 * 300.00031 * 15 13 4 36 36 H 1.08998 * 109.46779 * 300.00379 * 16 15 13 37 37 H 1.08998 * 109.46973 * 60.00381 * 16 15 13 38 38 H 1.09002 * 109.47031 * 299.99754 * 17 16 15 39 39 H 1.08998 * 109.47380 * 60.00259 * 17 16 15 40 40 H 1.08994 * 109.88229 * 300.51467 * 22 21 18 41 41 H 1.09006 * 109.88060 * 61.68049 * 22 21 18 42 42 H 1.09002 * 110.92435 * 264.10918 * 23 22 21 43 43 H 1.09002 * 110.58495 * 140.78815 * 23 22 21 44 44 H 1.08999 * 111.00586 * 206.23073 * 24 23 22 45 45 H 1.08997 * 111.00738 * 82.37328 * 24 23 22 46 46 H 1.09000 * 110.36363 * 274.67231 * 25 21 18 47 47 H 1.09000 * 110.36237 * 36.88401 * 25 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1909 1.5781 1.1787 6 1 5.2628 1.7098 1.1678 7 6 3.5072 1.5460 2.3879 8 7 2.3627 0.9066 2.4787 9 14 4.2148 2.4116 3.8843 10 1 3.8192 3.8428 3.8613 11 1 3.6916 1.7733 5.1188 12 1 5.6959 2.3070 3.8623 13 6 4.1784 1.3091 -1.1604 14 8 5.3914 1.3086 -1.1608 15 6 3.4243 1.1596 -2.4566 16 6 4.4182 1.0275 -3.6124 17 6 3.6526 0.8763 -4.9285 18 16 4.8308 0.7189 -6.2987 19 8 5.5275 1.9409 -6.5001 20 8 5.5276 -0.5168 -6.2178 21 7 3.8799 0.5635 -7.6455 22 6 3.3937 -0.7043 -8.2094 23 6 2.5708 -0.3599 -9.4687 24 6 3.1179 1.0360 -9.8678 25 6 3.3861 1.6730 -8.4814 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9562 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.8851 0.8845 3.3227 34 1 2.7974 2.0369 -2.6155 35 1 2.7980 0.2687 -2.4118 36 1 5.0442 1.9187 -3.6569 37 1 5.0455 0.1503 -3.4538 38 1 3.0263 -0.0148 -4.8841 39 1 3.0256 1.7536 -5.0869 40 1 4.2383 -1.3386 -8.4782 41 1 2.7606 -1.2143 -7.4833 42 1 1.5074 -0.3054 -9.2359 43 1 2.7569 -1.0874 -10.2589 44 1 2.3707 1.6049 -10.4211 45 1 4.0406 0.9448 -10.4409 46 1 2.4640 2.0796 -8.0659 47 1 4.1424 2.4539 -8.5606 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098022430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:20 Heat of formation + Delta-G solvation = -130.780317 kcal Electronic energy + Delta-G solvation = -27201.249692 eV Core-core repulsion = 23317.306239 eV Total energy + Delta-G solvation = -3883.943453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.56671 -39.18235 -38.26469 -37.34159 -37.08539 -35.59830 -34.11239 -33.12190 -31.83537 -29.84089 -29.66063 -27.42736 -26.13112 -23.86767 -23.07301 -22.29717 -22.02712 -20.57782 -19.91815 -18.86012 -18.70248 -18.12042 -17.52162 -17.27969 -16.77585 -16.39338 -16.26327 -15.91697 -15.29822 -15.20060 -14.83645 -14.63357 -14.53258 -14.18498 -13.99371 -13.83143 -13.61790 -13.47047 -13.31763 -13.22930 -13.19517 -13.03258 -12.92847 -12.67555 -12.60508 -12.49993 -12.16551 -12.09869 -12.07472 -12.01926 -11.99289 -11.86283 -11.65638 -11.48861 -11.29656 -10.74068 -10.31022 -9.91067 -9.67071 -8.33493 -5.82188 -0.84808 1.35026 1.42064 1.51651 1.66921 2.02856 2.28393 2.76805 3.03729 3.04840 3.10254 3.52591 3.68381 3.73256 3.93654 3.98826 4.16573 4.19199 4.32368 4.33278 4.42632 4.56634 4.61076 4.63959 4.65936 4.69314 4.73270 4.92021 4.94914 4.97285 5.03834 5.06769 5.08268 5.12267 5.14630 5.22675 5.26896 5.40677 5.40849 5.48790 5.53266 5.65357 5.97267 6.09889 6.55849 7.20940 7.53329 8.09340 8.63746 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.021555 B = 0.002590 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.691143 B =10810.009488 C =11614.416291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.120 4.120 3 C 0.125 3.875 4 N -0.453 5.453 5 C -0.356 4.356 6 H 0.066 0.934 7 C 0.010 3.990 8 N -0.859 5.859 9 Si 0.974 3.026 10 H -0.269 1.269 11 H -0.272 1.272 12 H -0.284 1.284 13 C 0.418 3.582 14 O -0.647 6.647 15 C -0.108 4.108 16 C -0.099 4.099 17 C -0.602 4.602 18 S 2.630 3.370 19 O -0.991 6.991 20 O -0.993 6.993 21 N -1.015 6.015 22 C 0.104 3.896 23 C -0.121 4.121 24 C -0.128 4.128 25 C 0.101 3.899 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.273 0.727 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.163 0.837 39 H 0.166 0.834 40 H 0.057 0.943 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.835 -1.081 -22.038 25.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.159 4.159 3 C 0.002 3.998 4 N -0.170 5.170 5 C -0.483 4.483 6 H 0.084 0.916 7 C -0.194 4.194 8 N -0.496 5.496 9 Si 0.799 3.201 10 H -0.195 1.195 11 H -0.197 1.197 12 H -0.209 1.209 13 C 0.209 3.791 14 O -0.536 6.536 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.734 4.734 18 S 2.728 3.272 19 O -0.981 6.981 20 O -0.983 6.983 21 N -0.855 5.855 22 C -0.020 4.020 23 C -0.160 4.160 24 C -0.167 4.167 25 C -0.024 4.024 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.181 0.819 39 H 0.184 0.816 40 H 0.076 0.924 41 H 0.100 0.900 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.421 -1.124 -21.798 24.187 hybrid contribution 0.381 0.273 1.533 1.603 sum -10.040 -0.850 -20.265 22.632 Atomic orbital electron populations 1.21517 0.94069 1.01437 1.01519 1.21765 0.96657 0.96679 1.00757 1.21643 0.78619 0.98148 1.01395 1.44087 1.06801 1.60869 1.05243 1.19514 0.93324 1.51119 0.84365 0.91574 1.25754 0.96981 0.96295 1.00390 1.70189 1.16722 1.35314 1.27422 0.85250 0.78127 0.79062 0.77655 1.19486 1.19668 1.20926 1.21080 0.87954 0.83197 0.86911 1.90478 1.16559 1.58609 1.87959 1.21486 0.98176 1.05387 0.89882 1.20965 0.97796 1.03065 0.92039 1.30474 1.16445 1.14766 1.11691 1.04135 0.75288 0.72639 0.75104 1.93529 1.71414 1.48024 1.85177 1.93530 1.71513 1.46398 1.86892 1.58475 1.70298 1.14875 1.41899 1.22003 0.98298 0.84470 0.97277 1.22659 1.00267 0.97291 0.95794 1.22797 1.02211 0.96487 0.95165 1.22367 0.99977 0.88676 0.91353 0.92530 0.93633 0.91592 0.94082 0.92156 0.90131 0.91503 0.91647 0.87189 0.87559 0.91587 0.91954 0.81911 0.81610 0.92423 0.89991 0.88675 0.89052 0.87586 0.91435 0.88995 0.91218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -4.54 5.67 30.59 0.17 -4.37 16 3 C 0.12 5.17 4.35 86.38 0.38 5.55 16 4 N -0.45 -23.08 2.64 -635.53 -1.68 -24.75 16 5 C -0.36 -20.32 9.42 84.04 0.79 -19.53 16 6 H 0.07 4.18 7.31 -2.91 -0.02 4.16 16 7 C 0.01 0.50 4.88 84.93 0.41 0.92 16 8 N -0.86 -42.57 8.70 21.66 0.19 -42.38 16 9 Si 0.97 42.13 29.63 68.60 2.03 44.16 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 11 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 12 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 13 C 0.42 20.65 7.58 87.66 0.66 21.31 16 14 O -0.65 -38.03 15.57 -3.07 -0.05 -38.07 16 15 C -0.11 -3.67 4.31 29.85 0.13 -3.54 16 16 C -0.10 -3.17 4.51 30.60 0.14 -3.03 16 17 C -0.60 -12.04 6.18 71.98 0.44 -11.59 16 18 S 2.63 66.47 5.65 -56.49 -0.32 66.15 16 19 O -0.99 -32.03 17.28 -127.65 -2.21 -34.23 16 20 O -0.99 -32.64 17.60 -127.65 -2.25 -34.88 16 21 N -1.02 -17.81 3.62 -506.40 -1.83 -19.64 16 22 C 0.10 1.42 6.89 86.73 0.60 2.01 16 23 C -0.12 -0.91 6.95 31.78 0.22 -0.69 16 24 C -0.13 -1.10 7.08 31.99 0.23 -0.87 16 25 C 0.10 1.31 7.08 86.86 0.61 1.92 16 26 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 27 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 28 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.04 1.44 6.44 -2.39 -0.02 1.43 16 30 H 0.06 2.79 6.40 -2.39 -0.02 2.77 16 31 H 0.08 3.68 5.83 -2.39 -0.01 3.67 16 32 H 0.07 2.27 6.71 -2.39 -0.02 2.25 16 33 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 34 H 0.11 3.02 7.42 -2.39 -0.02 3.01 16 35 H 0.11 3.11 6.39 -2.39 -0.02 3.09 16 36 H 0.07 2.32 8.10 -2.39 -0.02 2.30 16 37 H 0.06 2.24 8.10 -2.39 -0.02 2.22 16 38 H 0.16 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.17 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 45 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 46 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.07 1.11 7.66 -2.39 -0.02 1.09 16 Total: -1.00 -80.82 383.19 0.34 -80.48 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.95 Total: 18.05 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.50 Total: -14.87 kcal Atomic # 7 Polarization: -83.45 SS G_CDS: -3.32 Total: -86.78 kcal Atomic # 8 Polarization: -102.69 SS G_CDS: -4.50 Total: -107.19 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Atomic # 16 Polarization: 66.47 SS G_CDS: -0.32 Total: 66.15 kcal Total: -80.82 0.34 -80.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098022430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.303 kcal (2) G-P(sol) polarization free energy of solvation -80.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds