Wall clock time and date at job start Tue Mar 31 2020 16:31:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47225 * 2 1 4 4 N 1.46497 * 109.47454 * 180.02562 * 3 2 1 5 5 C 1.36947 * 119.99972 * 264.01523 * 4 3 2 6 6 H 1.07999 * 119.99767 * 187.77873 * 5 4 3 7 7 C 1.38810 * 119.99596 * 7.78037 * 5 4 3 8 8 N 1.31612 * 120.00169 * 25.64962 * 7 5 4 9 9 Si 1.86801 * 119.99572 * 205.64398 * 7 5 4 10 10 H 1.48507 * 109.46943 * 84.98842 * 9 7 5 11 11 H 1.48494 * 109.47196 * 204.98755 * 9 7 5 12 12 H 1.48499 * 109.47216 * 324.99185 * 9 7 5 13 13 C 1.46499 * 120.00258 * 84.00935 * 4 3 2 14 14 C 1.50702 * 109.47253 * 270.00712 * 13 4 3 15 15 O 1.21277 * 119.99827 * 359.97438 * 14 13 4 16 16 N 1.34777 * 120.00110 * 179.97438 * 14 13 4 17 17 C 1.46503 * 119.99938 * 359.97438 * 16 14 13 18 18 C 1.53008 * 109.46823 * 90.00061 * 17 16 14 19 19 C 1.46493 * 120.00248 * 180.02562 * 16 14 13 20 20 H 1.08999 * 109.64523 * 180.70189 * 19 16 14 21 21 C 1.53873 * 109.65013 * 60.26781 * 19 16 14 22 22 C 1.55044 * 106.62675 * 192.97125 * 21 19 16 23 23 S 1.83287 * 102.57037 * 42.43342 * 22 21 19 24 24 O 1.42093 * 109.35426 * 90.18500 * 23 22 21 25 25 O 1.42097 * 109.35668 * 223.39166 * 23 22 21 26 26 C 1.54167 * 109.64334 * 301.12685 * 19 16 14 27 27 H 1.09001 * 109.47112 * 300.00051 * 1 2 3 28 28 H 1.09003 * 109.46963 * 60.00046 * 1 2 3 29 29 H 1.08994 * 109.47205 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47112 * 239.99949 * 2 1 3 31 31 H 1.09003 * 109.46963 * 119.99954 * 2 1 3 32 32 H 1.09003 * 109.47588 * 60.00190 * 3 2 1 33 33 H 1.09003 * 109.47112 * 299.99862 * 3 2 1 34 34 H 0.97008 * 120.00144 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.47320 * 150.00212 * 13 4 3 36 36 H 1.09000 * 109.47089 * 30.00492 * 13 4 3 37 37 H 1.09001 * 109.47383 * 330.00476 * 17 16 14 38 38 H 1.08998 * 109.47296 * 210.00302 * 17 16 14 39 39 H 1.09001 * 109.46802 * 60.00059 * 18 17 16 40 40 H 1.08998 * 109.47381 * 300.00188 * 18 17 16 41 41 H 1.09001 * 109.46929 * 180.02562 * 18 17 16 42 42 H 1.09003 * 110.02715 * 312.26007 * 21 19 16 43 43 H 1.08995 * 110.02599 * 73.62871 * 21 19 16 44 44 H 1.09005 * 110.79116 * 160.70231 * 22 21 19 45 45 H 1.09002 * 110.79134 * 283.97339 * 22 21 19 46 46 H 1.09003 * 110.31988 * 266.66237 * 26 19 16 47 47 H 1.08994 * 110.32121 * 28.86108 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.5660 1.1786 6 1 5.2627 1.6924 1.1693 7 6 3.5062 1.5287 2.3859 8 7 2.3538 0.8984 2.4702 9 14 4.2213 2.3730 3.8910 10 1 3.8395 3.8081 3.8817 11 1 3.6915 1.7277 5.1190 12 1 5.7014 2.2544 3.8686 13 6 4.2370 1.3103 -1.2627 14 6 4.4880 -0.1481 -1.5475 15 8 4.0946 -0.9938 -0.7723 16 7 5.1497 -0.5127 -2.6637 17 6 5.6244 0.5089 -3.6004 18 6 7.0396 0.9403 -3.2102 19 6 5.3932 -1.9304 -2.9408 20 1 5.9483 -2.0313 -3.8734 21 6 4.0505 -2.6733 -3.0550 22 6 4.3769 -4.1884 -3.0130 23 16 5.6385 -4.2881 -1.6871 24 8 4.9939 -4.5015 -0.4389 25 8 6.6889 -5.1512 -2.1003 26 6 6.2027 -2.5527 -1.7858 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.8756 0.8727 3.3138 35 1 5.1895 1.8349 -1.1870 36 1 3.6476 1.7422 -2.0715 37 1 4.9590 1.3715 -3.5652 38 1 5.6349 0.0991 -4.6103 39 1 7.7050 0.0777 -3.2454 40 1 7.0291 1.3501 -2.2003 41 1 7.3927 1.7006 -3.9069 42 1 3.4044 -2.4074 -2.2184 43 1 3.5636 -2.4216 -3.9971 44 1 3.4920 -4.7677 -2.7493 45 1 4.7863 -4.5226 -3.9663 46 1 7.2692 -2.5154 -2.0080 47 1 5.9914 -2.0319 -0.8519 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122993631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:21 Heat of formation + Delta-G solvation = -90.252367 kcal Electronic energy + Delta-G solvation = -29186.908918 eV Core-core repulsion = 25304.722888 eV Total energy + Delta-G solvation = -3882.186030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.11858 -38.16077 -38.08469 -37.11611 -36.85727 -35.63250 -33.68371 -33.08542 -31.29476 -30.28004 -28.53439 -27.33543 -25.86591 -24.32341 -23.67596 -22.61229 -21.64328 -19.86078 -19.70123 -18.71243 -18.16378 -17.76904 -17.14595 -17.09353 -16.65887 -16.39082 -16.14153 -15.56524 -15.17424 -15.03630 -14.88160 -14.66097 -14.55691 -14.38348 -13.83528 -13.66910 -13.61547 -13.37714 -13.28846 -13.19034 -13.09403 -12.92261 -12.81028 -12.64640 -12.52936 -12.44145 -12.31702 -12.22845 -11.99082 -11.89640 -11.79359 -11.60849 -11.48772 -11.22020 -11.02359 -10.42734 -10.13273 -9.50435 -8.75746 -7.74328 -5.05907 -0.91234 1.47647 1.49094 1.55963 1.56680 2.01244 2.19144 2.57110 2.65179 3.06977 3.32592 3.44308 3.62985 3.72177 3.74801 3.95285 4.07578 4.21526 4.25934 4.47779 4.55746 4.57775 4.61377 4.63198 4.66721 4.78230 4.79031 4.80598 4.88923 4.91542 4.97748 5.05195 5.13841 5.15494 5.28571 5.47257 5.50317 5.60797 5.64797 5.86238 5.96343 6.36285 6.38276 6.63004 7.25902 7.60581 7.97875 8.33887 9.25763 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.004504 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.420035 B = 6214.984342 C = 6532.155091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.106 4.106 3 C 0.177 3.823 4 N -0.586 5.586 5 C -0.252 4.252 6 H 0.068 0.932 7 C -0.049 4.049 8 N -0.905 5.905 9 Si 0.951 3.049 10 H -0.283 1.283 11 H -0.305 1.305 12 H -0.280 1.280 13 C 0.128 3.872 14 C 0.470 3.530 15 O -0.543 6.543 16 N -0.610 5.610 17 C 0.101 3.899 18 C -0.172 4.172 19 C 0.159 3.841 20 H 0.155 0.845 21 C -0.141 4.141 22 C -0.548 4.548 23 S 2.380 3.620 24 O -0.994 6.994 25 O -0.974 6.974 26 C -0.602 4.602 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.039 0.961 30 H 0.024 0.976 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.027 0.973 34 H 0.242 0.758 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.114 0.886 39 H 0.058 0.942 40 H 0.034 0.966 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.129 0.871 44 H 0.146 0.854 45 H 0.181 0.819 46 H 0.159 0.841 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.504 -2.103 -21.607 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.146 4.146 3 C 0.052 3.948 4 N -0.305 5.305 5 C -0.382 4.382 6 H 0.086 0.914 7 C -0.245 4.245 8 N -0.551 5.551 9 Si 0.782 3.218 10 H -0.209 1.209 11 H -0.232 1.232 12 H -0.205 1.205 13 C -0.003 4.003 14 C 0.257 3.743 15 O -0.419 6.419 16 N -0.346 5.346 17 C -0.020 4.020 18 C -0.230 4.230 19 C 0.053 3.947 20 H 0.173 0.827 21 C -0.181 4.181 22 C -0.682 4.682 23 S 2.568 3.432 24 O -0.991 6.991 25 O -0.971 6.971 26 C -0.734 4.734 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.045 0.955 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.132 0.868 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.147 0.853 44 H 0.164 0.836 45 H 0.199 0.801 46 H 0.177 0.823 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.502 -3.285 -20.394 21.378 hybrid contribution 0.123 0.599 1.427 1.552 sum 5.625 -2.686 -18.968 19.966 Atomic orbital electron populations 1.21578 0.96911 0.99910 1.00411 1.21807 0.93749 0.99325 0.99682 1.20834 0.81580 0.94717 0.97704 1.44342 1.02213 1.82105 1.01821 1.19355 0.91935 1.42065 0.84856 0.91437 1.25347 0.98507 1.01163 0.99489 1.70406 1.18056 1.42189 1.24457 0.85515 0.77691 0.78878 0.79755 1.20946 1.23218 1.20511 1.21203 0.98419 0.90964 0.89699 1.23230 0.76546 0.94496 0.80019 1.90707 1.50235 1.53516 1.47449 1.48448 1.57175 1.05796 1.23200 1.21882 0.95477 0.91371 0.93287 1.22234 0.97036 1.02166 1.01598 1.21577 0.94033 0.82218 0.96873 0.82721 1.22689 0.98726 0.90001 1.06643 1.30346 1.16195 1.03939 1.17709 1.08959 0.77982 0.78476 0.77746 1.93583 1.76505 1.85509 1.43513 1.93537 1.56029 1.63773 1.83731 1.30787 1.11493 1.21970 1.09150 0.94421 0.92519 0.94173 0.95729 0.93223 0.92321 0.95529 0.94882 0.89752 0.88500 0.89405 0.86794 0.92307 0.94656 0.89432 0.91410 0.85273 0.83631 0.80098 0.82273 0.86642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.20 9.91 71.98 0.71 -4.48 16 2 C -0.11 -5.08 4.74 30.59 0.14 -4.94 16 3 C 0.18 8.39 4.92 86.38 0.42 8.82 16 4 N -0.59 -28.02 2.12 -706.34 -1.49 -29.52 16 5 C -0.25 -13.72 9.70 84.03 0.82 -12.91 16 6 H 0.07 3.63 7.94 -2.91 -0.02 3.61 16 7 C -0.05 -2.79 4.89 84.86 0.42 -2.37 16 8 N -0.90 -53.38 8.63 21.65 0.19 -53.20 16 9 Si 0.95 46.15 29.62 68.60 2.03 48.19 16 10 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.30 -15.24 7.11 99.48 0.71 -14.53 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 13 C 0.13 4.55 4.74 85.63 0.41 4.96 16 14 C 0.47 16.40 6.55 87.66 0.57 16.98 16 15 O -0.54 -24.76 10.44 -3.02 -0.03 -24.79 16 16 N -0.61 -13.72 2.45 -794.00 -1.94 -15.66 16 17 C 0.10 1.37 5.90 86.38 0.51 1.88 16 18 C -0.17 -2.42 10.24 71.98 0.74 -1.68 16 19 C 0.16 2.94 2.98 45.68 0.14 3.08 16 20 H 0.16 1.22 7.81 -2.39 -0.02 1.20 16 21 C -0.14 -2.73 5.80 31.59 0.18 -2.55 16 22 C -0.55 -8.79 7.31 72.68 0.53 -8.26 16 23 S 2.38 63.57 6.10 -56.49 -0.34 63.23 16 24 O -0.99 -40.07 18.14 -127.49 -2.31 -42.38 16 25 O -0.97 -28.81 18.15 -127.49 -2.31 -31.12 16 26 C -0.60 -14.75 6.52 72.38 0.47 -14.28 16 27 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.02 1.14 6.42 -2.39 -0.02 1.13 16 31 H 0.05 2.93 6.36 -2.39 -0.02 2.91 16 32 H 0.06 3.17 5.83 -2.39 -0.01 3.16 16 33 H 0.03 1.10 7.98 -2.39 -0.02 1.08 16 34 H 0.24 14.12 8.31 -92.70 -0.77 13.35 16 35 H 0.08 2.79 7.07 -2.39 -0.02 2.77 16 36 H 0.10 2.80 7.21 -2.39 -0.02 2.78 16 37 H 0.09 1.14 6.44 -2.39 -0.02 1.12 16 38 H 0.11 0.69 7.93 -2.39 -0.02 0.67 16 39 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.03 0.70 7.22 -2.39 -0.02 0.68 16 41 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.07 2.02 6.04 -2.39 -0.01 2.01 16 43 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.15 2.24 8.14 -2.38 -0.02 2.22 16 45 H 0.18 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.16 2.86 8.14 -2.39 -0.02 2.84 16 47 H 0.12 4.03 6.04 -2.39 -0.01 4.02 16 Total: -1.00 -86.49 373.04 0.80 -85.69 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.96 Total: 15.32 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: 6.06 Total: -15.76 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -3.25 Total: -98.38 kcal Atomic # 8 Polarization: -93.63 SS G_CDS: -4.66 Total: -98.29 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.19 kcal Atomic # 16 Polarization: 63.57 SS G_CDS: -0.34 Total: 63.23 kcal Total: -86.49 0.80 -85.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122993631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.561 kcal (2) G-P(sol) polarization free energy of solvation -86.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds