Wall clock time and date at job start Tue Mar 31 2020 16:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 N 1.46497 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00560 * 95.45872 * 4 3 2 6 6 H 1.08000 * 120.00201 * 211.66163 * 5 4 3 7 7 C 1.38812 * 119.99360 * 31.38508 * 5 4 3 8 8 N 1.31626 * 119.99811 * 207.54061 * 7 5 4 9 9 Si 1.86794 * 120.00319 * 27.53794 * 7 5 4 10 10 H 1.48498 * 109.47012 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46958 * 120.00123 * 9 7 5 12 12 H 1.48502 * 109.47226 * 239.99886 * 9 7 5 13 13 C 1.46502 * 119.99591 * 275.45854 * 4 3 2 14 14 C 1.50696 * 109.47345 * 269.99846 * 13 4 3 15 15 O 1.21281 * 119.99842 * 0.02562 * 14 13 4 16 16 N 1.34775 * 120.00503 * 180.02562 * 14 13 4 17 17 C 1.46503 * 119.99805 * 359.97438 * 16 14 13 18 18 C 1.53001 * 109.47290 * 89.99879 * 17 16 14 19 19 C 1.46500 * 120.00381 * 180.02562 * 16 14 13 20 20 H 1.08998 * 110.01218 * 179.29629 * 19 16 14 21 21 C 1.53873 * 110.02610 * 300.67562 * 19 16 14 22 22 C 1.54159 * 108.70484 * 166.47127 * 21 19 16 23 23 S 1.82919 * 105.08555 * 332.09260 * 22 21 19 24 24 O 1.42098 * 109.35433 * 115.52516 * 23 22 21 25 25 O 1.42097 * 109.35348 * 248.59116 * 23 22 21 26 26 C 1.55042 * 110.02650 * 57.91664 * 19 16 14 27 27 H 1.09004 * 109.47190 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47605 * 300.00396 * 1 2 3 29 29 H 1.09006 * 109.47040 * 60.00606 * 1 2 3 30 30 H 1.09000 * 109.47703 * 239.99220 * 2 1 3 31 31 H 1.09006 * 109.47040 * 119.99394 * 2 1 3 32 32 H 1.08993 * 109.47183 * 59.99345 * 3 2 1 33 33 H 1.09006 * 109.46647 * 299.99635 * 3 2 1 34 34 H 0.97005 * 119.99484 * 0.40065 * 8 7 5 35 35 H 1.08997 * 109.47376 * 30.00599 * 13 4 3 36 36 H 1.09008 * 109.47194 * 150.00267 * 13 4 3 37 37 H 1.09001 * 109.47567 * 210.00599 * 17 16 14 38 38 H 1.09005 * 109.47153 * 330.00418 * 17 16 14 39 39 H 1.08989 * 109.47331 * 180.02562 * 18 17 16 40 40 H 1.09003 * 109.46967 * 300.00521 * 18 17 16 41 41 H 1.09005 * 109.46582 * 60.00190 * 18 17 16 42 42 H 1.09004 * 109.64665 * 286.32411 * 21 19 16 43 43 H 1.09001 * 109.64280 * 46.61656 * 21 19 16 44 44 H 1.09004 * 110.32024 * 90.99620 * 22 21 19 45 45 H 1.09001 * 110.32338 * 213.08592 * 22 21 19 46 46 H 1.08994 * 110.79142 * 316.54587 * 26 19 16 47 47 H 1.09009 * 110.79214 * 80.01116 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1902 1.5552 -1.1795 6 1 5.1497 1.0730 -1.2950 7 6 3.6489 2.2842 -2.2294 8 7 3.9662 1.9846 -3.4712 9 14 2.4702 3.6906 -1.8801 10 1 2.2786 3.8231 -0.4135 11 1 3.0325 4.9539 -2.4215 12 1 1.1628 3.4132 -2.5275 13 6 4.2368 1.3220 1.2640 14 6 4.4878 2.6950 1.8321 15 8 4.0936 3.6775 1.2403 16 7 5.1502 2.8313 2.9979 17 6 5.6258 1.6445 3.7132 18 6 7.0407 1.2994 3.2443 19 6 5.3936 4.1661 3.5505 20 1 5.9277 4.0861 4.4973 21 6 6.2102 5.0079 2.5544 22 6 6.1596 6.4838 2.9965 23 16 4.5743 6.6584 3.8923 24 8 4.8347 6.9700 5.2540 25 8 3.6932 7.4765 3.1351 26 6 4.0481 4.9072 3.7607 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 4.5738 1.2505 -3.6529 35 1 3.6475 0.7383 1.9711 36 1 5.1894 0.8229 1.0859 37 1 5.6369 1.8459 4.7844 38 1 4.9605 0.8057 3.5081 39 1 7.3944 0.4162 3.7761 40 1 7.0295 1.0979 2.1731 41 1 7.7061 2.1381 3.4494 42 1 7.2443 4.6634 2.5448 43 1 5.7840 4.9095 1.5560 44 1 6.9954 6.7094 3.6588 45 1 6.1789 7.1405 2.1267 46 1 3.3899 4.7647 2.9038 47 1 3.5645 4.5778 4.6805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000122993889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:25 Heat of formation + Delta-G solvation = -73.962964 kcal Electronic energy + Delta-G solvation = -28854.503540 eV Core-core repulsion = 24973.023872 eV Total energy + Delta-G solvation = -3881.479668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.01558 -37.09726 -36.84869 -36.06704 -35.66043 -34.77226 -32.65076 -31.44427 -30.62817 -29.25781 -27.48291 -25.48095 -24.95559 -23.39592 -22.25074 -21.40858 -20.67570 -18.91674 -18.54397 -17.38194 -17.24404 -16.89261 -16.24968 -15.64510 -15.45553 -15.27093 -14.73108 -14.48027 -14.27722 -14.04974 -13.83457 -13.79441 -13.30195 -13.16203 -12.99385 -12.65002 -12.53257 -12.41981 -12.23758 -12.21839 -12.07357 -11.95574 -11.85466 -11.36960 -11.33713 -11.25738 -11.09500 -10.88582 -10.75857 -10.66619 -10.50368 -10.38046 -9.89344 -9.55002 -9.23646 -8.90890 -8.55630 -8.38038 -7.07219 -6.30627 -3.36270 -0.02077 2.41584 3.06214 3.20551 3.53691 3.55840 3.71794 3.93770 3.97123 4.33227 4.44989 4.57671 4.67761 4.70670 4.77471 4.85032 4.93120 5.12747 5.15851 5.27801 5.34422 5.45330 5.53558 5.59138 5.61234 5.65157 5.69967 5.76587 5.83238 5.90790 5.96661 6.04261 6.08989 6.14977 6.20141 6.36448 6.50797 6.52424 6.69900 6.84584 7.03054 7.61602 8.00581 8.44064 8.74937 9.00241 9.57071 10.13979 11.07709 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.004601 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.927266 B = 6084.049981 C = 6716.784698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.141 4.141 3 C 0.155 3.845 4 N -0.574 5.574 5 C -0.355 4.355 6 H 0.062 0.938 7 C 0.006 3.994 8 N -0.907 5.907 9 Si 1.043 2.957 10 H -0.255 1.255 11 H -0.305 1.305 12 H -0.302 1.302 13 C 0.131 3.869 14 C 0.480 3.520 15 O -0.507 6.507 16 N -0.616 5.616 17 C 0.108 3.892 18 C -0.174 4.174 19 C 0.156 3.844 20 H 0.102 0.898 21 C -0.136 4.136 22 C -0.584 4.584 23 S 2.387 3.613 24 O -0.946 6.946 25 O -0.935 6.935 26 C -0.604 4.604 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.051 0.949 34 H 0.264 0.736 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.055 0.945 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.133 0.867 45 H 0.139 0.861 46 H 0.160 0.840 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.160 -0.606 17.874 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C 0.029 3.971 4 N -0.293 5.293 5 C -0.484 4.484 6 H 0.080 0.920 7 C -0.198 4.198 8 N -0.543 5.543 9 Si 0.873 3.127 10 H -0.180 1.180 11 H -0.233 1.233 12 H -0.230 1.230 13 C 0.000 4.000 14 C 0.267 3.733 15 O -0.380 6.380 16 N -0.354 5.354 17 C -0.015 4.015 18 C -0.233 4.233 19 C 0.050 3.950 20 H 0.120 0.880 21 C -0.175 4.175 22 C -0.715 4.715 23 S 2.571 3.429 24 O -0.943 6.943 25 O -0.932 6.932 26 C -0.735 4.735 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.130 0.870 44 H 0.151 0.849 45 H 0.158 0.842 46 H 0.178 0.822 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 2.576 1.869 17.178 17.470 hybrid contribution 1.571 -1.709 0.394 2.354 sum 4.146 0.160 17.572 18.055 Atomic orbital electron populations 1.21741 0.97050 1.00656 1.01321 1.22072 0.94098 1.00271 1.01638 1.21047 0.83531 0.93582 0.98926 1.44043 1.00407 1.83866 1.01026 1.19959 1.07102 1.31616 0.89701 0.91996 1.26195 1.01618 0.99642 0.92368 1.70947 1.33430 1.30799 1.19166 0.84135 0.74950 0.76447 0.77127 1.17954 1.23315 1.23002 1.21177 0.98200 0.91035 0.89610 1.23621 0.75826 0.95493 0.78331 1.90603 1.48946 1.40475 1.57944 1.48557 1.58597 1.04328 1.23900 1.21544 0.95688 0.88038 0.96227 1.22259 0.96777 1.01512 1.02731 1.21464 0.91294 0.85120 0.97157 0.88047 1.22386 1.02677 0.89205 1.03252 1.30379 1.21258 1.05257 1.14590 1.09002 0.79041 0.78889 0.75979 1.93593 1.85218 1.83055 1.32431 1.93626 1.62456 1.64781 1.72326 1.31083 1.07687 1.22109 1.12630 0.93488 0.93423 0.92879 0.91554 0.93282 0.94528 0.93067 0.92581 0.91520 0.90436 0.90808 0.89887 0.91707 0.91728 0.92578 0.89254 0.86970 0.84889 0.84248 0.82243 0.84775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.91 37.16 0.37 -1.89 16 2 C -0.14 -2.53 6.25 -26.73 -0.17 -2.69 16 3 C 0.15 3.27 3.92 -4.04 -0.02 3.25 16 4 N -0.57 -12.91 1.66 -174.61 -0.29 -13.20 16 5 C -0.36 -9.57 9.79 -15.06 -0.15 -9.72 16 6 H 0.06 1.78 8.06 -52.49 -0.42 1.35 16 7 C 0.01 0.17 5.22 -17.43 -0.09 0.08 16 8 N -0.91 -27.85 13.71 55.49 0.76 -27.09 16 9 Si 1.04 27.45 25.23 -169.99 -4.29 23.16 16 10 H -0.26 -6.43 5.27 56.52 0.30 -6.13 16 11 H -0.30 -8.30 7.11 56.52 0.40 -7.90 16 12 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 13 C 0.13 2.31 4.72 -5.19 -0.02 2.29 16 14 C 0.48 8.24 7.08 -10.99 -0.08 8.16 16 15 O -0.51 -10.66 11.17 5.56 0.06 -10.59 16 16 N -0.62 -7.65 2.48 -164.36 -0.41 -8.06 16 17 C 0.11 0.96 5.91 -4.04 -0.02 0.94 16 18 C -0.17 -1.49 10.24 37.16 0.38 -1.11 16 19 C 0.16 1.71 3.02 -66.40 -0.20 1.51 16 20 H 0.10 0.77 7.82 -51.93 -0.41 0.37 16 21 C -0.14 -1.57 5.76 -25.67 -0.15 -1.72 16 22 C -0.58 -5.69 7.26 37.76 0.27 -5.42 16 23 S 2.39 28.64 6.10 -107.50 -0.66 27.98 16 24 O -0.95 -12.99 18.14 -57.73 -1.05 -14.04 16 25 O -0.93 -15.36 18.15 -57.73 -1.05 -16.40 16 26 C -0.60 -7.05 6.62 38.24 0.25 -6.80 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.04 0.73 8.11 -51.93 -0.42 0.31 16 33 H 0.05 1.21 3.46 -51.93 -0.18 1.03 16 34 H 0.26 7.98 8.73 -40.82 -0.36 7.62 16 35 H 0.07 0.98 7.33 -51.93 -0.38 0.60 16 36 H 0.08 1.32 7.08 -51.92 -0.37 0.95 16 37 H 0.07 0.49 7.93 -51.93 -0.41 0.07 16 38 H 0.08 0.70 6.44 -51.93 -0.33 0.37 16 39 H 0.06 0.44 8.14 -51.94 -0.42 0.01 16 40 H 0.06 0.69 7.22 -51.93 -0.37 0.32 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.11 1.73 5.95 -51.93 -0.31 1.42 16 44 H 0.13 0.94 8.14 -51.93 -0.42 0.51 16 45 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.16 2.36 5.96 -51.93 -0.31 2.05 16 47 H 0.13 1.23 8.14 -51.92 -0.42 0.81 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -37.12 375.47 -8.70 -45.82 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.82 Total: -0.11 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 0.38 Total: -13.13 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.06 Total: -48.35 kcal Atomic # 8 Polarization: -39.00 SS G_CDS: -2.03 Total: -41.04 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: -4.29 Total: 23.16 kcal Atomic # 16 Polarization: 28.64 SS G_CDS: -0.66 Total: 27.98 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.12 -8.70 -45.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122993889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.141 kcal (2) G-P(sol) polarization free energy of solvation -37.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds