Wall clock time and date at job start Tue Mar 31 2020 16:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47164 * 2 1 4 4 N 1.46497 * 109.47191 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00560 * 95.45872 * 4 3 2 6 6 H 1.08000 * 120.00201 * 211.66163 * 5 4 3 7 7 C 1.38812 * 119.99360 * 31.38508 * 5 4 3 8 8 N 1.31626 * 119.99811 * 207.54061 * 7 5 4 9 9 Si 1.86794 * 120.00319 * 27.53794 * 7 5 4 10 10 H 1.48498 * 109.47012 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46958 * 120.00123 * 9 7 5 12 12 H 1.48502 * 109.47226 * 239.99886 * 9 7 5 13 13 C 1.46502 * 119.99591 * 275.45854 * 4 3 2 14 14 C 1.50696 * 109.47345 * 269.99846 * 13 4 3 15 15 O 1.21281 * 119.99842 * 0.02562 * 14 13 4 16 16 N 1.34775 * 120.00503 * 180.02562 * 14 13 4 17 17 C 1.46503 * 119.99805 * 359.97438 * 16 14 13 18 18 C 1.53001 * 109.47290 * 89.99879 * 17 16 14 19 19 C 1.46500 * 120.00381 * 180.02562 * 16 14 13 20 20 H 1.08998 * 110.01218 * 179.29629 * 19 16 14 21 21 C 1.53873 * 110.02610 * 300.67562 * 19 16 14 22 22 C 1.54159 * 108.70484 * 166.47127 * 21 19 16 23 23 S 1.82919 * 105.08555 * 332.09260 * 22 21 19 24 24 O 1.42098 * 109.35433 * 115.52516 * 23 22 21 25 25 O 1.42097 * 109.35348 * 248.59116 * 23 22 21 26 26 C 1.55042 * 110.02650 * 57.91664 * 19 16 14 27 27 H 1.09004 * 109.47190 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47605 * 300.00396 * 1 2 3 29 29 H 1.09006 * 109.47040 * 60.00606 * 1 2 3 30 30 H 1.09000 * 109.47703 * 239.99220 * 2 1 3 31 31 H 1.09006 * 109.47040 * 119.99394 * 2 1 3 32 32 H 1.08993 * 109.47183 * 59.99345 * 3 2 1 33 33 H 1.09006 * 109.46647 * 299.99635 * 3 2 1 34 34 H 0.97005 * 119.99484 * 0.40065 * 8 7 5 35 35 H 1.08997 * 109.47376 * 30.00599 * 13 4 3 36 36 H 1.09008 * 109.47194 * 150.00267 * 13 4 3 37 37 H 1.09001 * 109.47567 * 210.00599 * 17 16 14 38 38 H 1.09005 * 109.47153 * 330.00418 * 17 16 14 39 39 H 1.08989 * 109.47331 * 180.02562 * 18 17 16 40 40 H 1.09003 * 109.46967 * 300.00521 * 18 17 16 41 41 H 1.09005 * 109.46582 * 60.00190 * 18 17 16 42 42 H 1.09004 * 109.64665 * 286.32411 * 21 19 16 43 43 H 1.09001 * 109.64280 * 46.61656 * 21 19 16 44 44 H 1.09004 * 110.32024 * 90.99620 * 22 21 19 45 45 H 1.09001 * 110.32338 * 213.08592 * 22 21 19 46 46 H 1.08994 * 110.79142 * 316.54587 * 26 19 16 47 47 H 1.09009 * 110.79214 * 80.01116 * 26 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1902 1.5552 -1.1795 6 1 5.1497 1.0730 -1.2950 7 6 3.6489 2.2842 -2.2294 8 7 3.9662 1.9846 -3.4712 9 14 2.4702 3.6906 -1.8801 10 1 2.2786 3.8231 -0.4135 11 1 3.0325 4.9539 -2.4215 12 1 1.1628 3.4132 -2.5275 13 6 4.2368 1.3220 1.2640 14 6 4.4878 2.6950 1.8321 15 8 4.0936 3.6775 1.2403 16 7 5.1502 2.8313 2.9979 17 6 5.6258 1.6445 3.7132 18 6 7.0407 1.2994 3.2443 19 6 5.3936 4.1661 3.5505 20 1 5.9277 4.0861 4.4973 21 6 6.2102 5.0079 2.5544 22 6 6.1596 6.4838 2.9965 23 16 4.5743 6.6584 3.8923 24 8 4.8347 6.9700 5.2540 25 8 3.6932 7.4765 3.1351 26 6 4.0481 4.9072 3.7607 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 4.5738 1.2505 -3.6529 35 1 3.6475 0.7383 1.9711 36 1 5.1894 0.8229 1.0859 37 1 5.6369 1.8459 4.7844 38 1 4.9605 0.8057 3.5081 39 1 7.3944 0.4162 3.7761 40 1 7.0295 1.0979 2.1731 41 1 7.7061 2.1381 3.4494 42 1 7.2443 4.6634 2.5448 43 1 5.7840 4.9095 1.5560 44 1 6.9954 6.7094 3.6588 45 1 6.1789 7.1405 2.1267 46 1 3.3899 4.7647 2.9038 47 1 3.5645 4.5778 4.6805 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122993889.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:24 Heat of formation + Delta-G solvation = -101.957993 kcal Electronic energy + Delta-G solvation = -28855.717495 eV Core-core repulsion = 24973.023872 eV Total energy + Delta-G solvation = -3882.693624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18981 -38.34246 -38.11986 -37.18706 -37.00447 -35.68904 -34.41615 -33.22277 -31.47414 -30.27108 -28.86872 -27.15190 -25.99901 -24.44281 -23.46656 -22.71663 -22.20346 -19.89239 -19.80069 -19.33551 -18.25477 -17.92437 -17.30237 -17.01733 -16.72980 -16.52433 -16.04737 -15.79395 -15.52091 -15.38828 -14.95816 -14.82941 -14.67156 -14.51931 -14.15947 -14.10171 -13.93492 -13.48733 -13.27736 -13.24791 -13.13113 -13.09439 -12.95348 -12.62804 -12.59958 -12.40654 -12.28734 -12.26366 -12.16895 -11.91212 -11.65124 -11.61357 -11.44371 -11.31199 -11.18789 -10.65128 -10.29783 -9.60171 -9.02538 -8.47292 -5.50229 -0.95626 1.41664 1.49685 1.55619 1.82447 1.89342 2.13573 2.53435 2.60665 3.00633 3.08518 3.38604 3.43778 3.57500 3.71816 3.91446 3.97928 4.09415 4.17191 4.19078 4.36236 4.41891 4.46600 4.54544 4.60425 4.67214 4.68761 4.69964 4.72929 4.78807 4.85615 4.90810 4.98470 5.08674 5.13859 5.15671 5.20131 5.39253 5.46177 5.54681 5.76307 5.83728 6.31395 6.53418 6.92182 7.42746 7.66335 8.08555 8.86266 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.004601 C = 0.004168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.927266 B = 6084.049981 C = 6716.784698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.132 4.132 3 C 0.149 3.851 4 N -0.592 5.592 5 C -0.319 4.319 6 H 0.037 0.963 7 C -0.046 4.046 8 N -0.951 5.951 9 Si 1.078 2.922 10 H -0.240 1.240 11 H -0.325 1.325 12 H -0.299 1.299 13 C 0.128 3.872 14 C 0.479 3.521 15 O -0.552 6.552 16 N -0.605 5.605 17 C 0.100 3.900 18 C -0.172 4.172 19 C 0.151 3.849 20 H 0.152 0.848 21 C -0.140 4.140 22 C -0.564 4.564 23 S 2.396 3.604 24 O -0.961 6.961 25 O -0.989 6.989 26 C -0.600 4.600 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.022 0.978 34 H 0.253 0.747 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.034 0.966 41 H 0.062 0.938 42 H 0.111 0.889 43 H 0.069 0.931 44 H 0.172 0.828 45 H 0.140 0.860 46 H 0.129 0.871 47 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.891 -1.681 22.224 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.024 3.976 4 N -0.313 5.313 5 C -0.449 4.449 6 H 0.055 0.945 7 C -0.244 4.244 8 N -0.593 5.593 9 Si 0.908 3.092 10 H -0.164 1.164 11 H -0.256 1.256 12 H -0.227 1.227 13 C -0.002 4.002 14 C 0.267 3.733 15 O -0.429 6.429 16 N -0.340 5.340 17 C -0.022 4.022 18 C -0.230 4.230 19 C 0.045 3.955 20 H 0.170 0.830 21 C -0.179 4.179 22 C -0.696 4.696 23 S 2.584 3.416 24 O -0.958 6.958 25 O -0.986 6.986 26 C -0.731 4.731 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.122 0.878 36 H 0.100 0.900 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.129 0.871 43 H 0.088 0.912 44 H 0.190 0.810 45 H 0.158 0.842 46 H 0.147 0.853 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.299 0.778 21.639 21.903 hybrid contribution 1.491 -1.488 -0.765 2.241 sum 4.789 -0.710 20.874 21.428 Atomic orbital electron populations 1.21713 0.94715 1.02299 1.01617 1.21938 0.96124 0.97718 1.01342 1.21134 0.82757 0.95537 0.98149 1.44025 1.01138 1.84552 1.01541 1.19796 1.05470 1.28315 0.91355 0.94502 1.26839 1.03541 1.01522 0.92483 1.71009 1.35807 1.32069 1.20388 0.83653 0.73918 0.73970 0.77620 1.16354 1.25571 1.22722 1.21250 0.98554 0.92052 0.88295 1.23012 0.76404 0.94239 0.79679 1.90613 1.51143 1.41442 1.59735 1.48296 1.56869 1.06371 1.22448 1.21916 0.95715 0.86675 0.97883 1.22230 0.96840 1.02843 1.01078 1.21820 0.91112 0.83750 0.98790 0.83037 1.22375 1.03660 0.90520 1.01354 1.30257 1.20305 1.04256 1.14827 1.08553 0.79305 0.78525 0.75227 1.93565 1.85545 1.83484 1.33254 1.93558 1.64946 1.66843 1.73291 1.30989 1.07952 1.21549 1.12651 0.91187 0.91495 0.94262 0.94519 0.90798 0.92974 0.96026 0.93752 0.87815 0.90011 0.86991 0.89223 0.89457 0.94639 0.91930 0.87081 0.91231 0.81043 0.84184 0.85295 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.91 71.98 0.71 -3.34 16 2 C -0.13 -4.50 6.25 30.59 0.19 -4.31 16 3 C 0.15 6.17 3.92 86.38 0.34 6.51 16 4 N -0.59 -26.40 1.66 -706.35 -1.18 -27.57 16 5 C -0.32 -17.67 9.79 84.03 0.82 -16.84 16 6 H 0.04 2.21 8.06 -2.91 -0.02 2.18 16 7 C -0.05 -2.79 5.22 84.86 0.44 -2.35 16 8 N -0.95 -61.35 13.71 21.65 0.30 -61.05 16 9 Si 1.08 58.29 25.23 68.60 1.73 60.02 16 10 H -0.24 -12.22 5.27 99.48 0.52 -11.70 16 11 H -0.33 -18.41 7.11 99.48 0.71 -17.71 16 12 H -0.30 -15.70 7.11 99.48 0.71 -15.00 16 13 C 0.13 4.27 4.72 85.63 0.40 4.67 16 14 C 0.48 15.62 7.08 87.66 0.62 16.24 16 15 O -0.55 -23.17 11.17 -3.03 -0.03 -23.20 16 16 N -0.60 -12.88 2.48 -792.32 -1.97 -14.84 16 17 C 0.10 1.27 5.91 86.38 0.51 1.78 16 18 C -0.17 -2.25 10.24 71.98 0.74 -1.51 16 19 C 0.15 2.72 3.02 45.98 0.14 2.86 16 20 H 0.15 1.31 7.82 -2.39 -0.02 1.30 16 21 C -0.14 -2.88 5.76 31.28 0.18 -2.70 16 22 C -0.56 -9.51 7.26 72.37 0.53 -8.99 16 23 S 2.40 53.95 6.10 -56.49 -0.34 53.61 16 24 O -0.96 -24.10 18.14 -127.47 -2.31 -26.41 16 25 O -0.99 -33.04 18.15 -127.47 -2.31 -35.36 16 26 C -0.60 -12.58 6.62 72.68 0.48 -12.10 16 27 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.04 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 32 H 0.05 1.98 8.11 -2.39 -0.02 1.96 16 33 H 0.02 1.03 3.46 -2.38 -0.01 1.02 16 34 H 0.25 16.18 8.73 -92.70 -0.81 15.37 16 35 H 0.10 2.66 7.33 -2.39 -0.02 2.64 16 36 H 0.08 2.65 7.08 -2.38 -0.02 2.63 16 37 H 0.11 0.70 7.93 -2.39 -0.02 0.68 16 38 H 0.09 1.06 6.44 -2.38 -0.02 1.05 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.03 0.68 7.22 -2.39 -0.02 0.66 16 41 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.11 1.80 8.14 -2.39 -0.02 1.79 16 43 H 0.07 2.13 5.95 -2.39 -0.01 2.11 16 44 H 0.17 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.13 3.74 5.96 -2.39 -0.01 3.73 16 47 H 0.16 2.38 8.14 -2.38 -0.02 2.36 16 Total: -1.00 -87.07 375.47 0.72 -86.35 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: 0.73 Total: 8.53 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: 6.11 Total: -20.07 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -2.84 Total: -103.47 kcal Atomic # 8 Polarization: -80.31 SS G_CDS: -4.66 Total: -84.97 kcal Atomic # 14 Polarization: 58.29 SS G_CDS: 1.73 Total: 60.02 kcal Atomic # 16 Polarization: 53.95 SS G_CDS: -0.34 Total: 53.61 kcal Total: -87.07 0.72 -86.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122993889.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.606 kcal (2) G-P(sol) polarization free energy of solvation -87.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds