Wall clock time and date at job start Tue Mar 31 2020 16:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 N 1.46503 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.36796 * 119.99821 * 265.70282 * 4 3 2 6 6 H 1.08000 * 119.99780 * 358.10019 * 5 4 3 7 7 C 1.39094 * 119.99861 * 178.10177 * 5 4 3 8 8 N 1.31321 * 120.00480 * 88.64316 * 7 5 4 9 9 Si 1.86807 * 120.00077 * 268.63985 * 7 5 4 10 10 H 1.48499 * 109.46851 * 90.00053 * 9 7 5 11 11 H 1.48493 * 109.47505 * 210.00047 * 9 7 5 12 12 H 1.48506 * 109.47064 * 330.00385 * 9 7 5 13 13 C 1.34771 * 119.99862 * 85.70712 * 4 3 2 14 14 O 1.21571 * 119.99481 * 183.76752 * 13 4 3 15 15 C 1.48023 * 120.00259 * 3.76741 * 13 4 3 16 16 C 1.39133 * 119.69661 * 173.83845 * 15 13 4 17 17 C 1.39405 * 118.95008 * 179.97438 * 16 15 13 18 18 N 1.39197 * 120.82741 * 179.97438 * 17 16 15 19 19 C 1.47197 * 111.00053 * 234.24825 * 18 17 16 20 20 C 1.52991 * 108.72446 * 54.36865 * 19 18 17 21 21 N 1.46006 * 110.04460 * 50.29386 * 20 19 18 22 22 C 1.33718 * 122.92815 * 341.83720 * 21 20 19 23 23 O 1.21280 * 118.62491 * 181.69023 * 22 21 20 24 24 C 1.46901 * 111.00125 * 357.14092 * 18 17 16 25 25 C 1.39456 * 118.34624 * 359.97438 * 17 16 15 26 26 C 1.38224 * 119.27793 * 0.02562 * 25 17 16 27 27 N 1.31652 * 121.00483 * 0.02562 * 26 25 17 28 28 H 1.09000 * 109.46842 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46868 * 300.00238 * 1 2 3 30 30 H 1.08995 * 109.47114 * 59.99883 * 1 2 3 31 31 H 1.08999 * 109.47044 * 239.99485 * 2 1 3 32 32 H 1.09004 * 109.46987 * 119.99837 * 2 1 3 33 33 H 1.09005 * 109.46911 * 60.00040 * 3 2 1 34 34 H 1.08995 * 109.47196 * 300.00067 * 3 2 1 35 35 H 0.96996 * 120.00728 * 184.89534 * 8 7 5 36 36 H 1.08004 * 120.52550 * 0.02562 * 16 15 13 37 37 H 1.08997 * 109.59480 * 174.14059 * 19 18 17 38 38 H 1.08997 * 109.59562 * 294.44541 * 19 18 17 39 39 H 1.09001 * 109.37130 * 170.47049 * 20 19 18 40 40 H 1.08992 * 109.37330 * 290.11424 * 20 19 18 41 41 H 0.97000 * 118.53744 * 161.85895 * 21 20 19 42 42 H 1.08994 * 109.38958 * 47.08876 * 24 18 17 43 43 H 1.09007 * 109.38785 * 166.78210 * 24 18 17 44 44 H 1.07995 * 120.36103 * 179.97438 * 25 17 16 45 45 H 1.08002 * 119.49543 * 179.72054 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1895 1.5310 1.1805 6 1 3.6503 1.6319 2.1108 7 6 5.5799 1.4912 1.1832 8 7 6.2689 2.6016 1.0539 9 14 6.4672 -0.1419 1.3709 10 1 6.7004 -0.7355 0.0298 11 1 7.7702 0.0776 2.0484 12 1 5.6362 -1.0663 2.1836 13 6 4.1784 1.3552 -1.1648 14 8 5.3922 1.2861 -1.1612 15 6 3.4402 1.3436 -2.4478 16 6 4.1431 1.3832 -3.6478 17 6 3.4322 1.3710 -4.8469 18 7 4.0957 1.4100 -6.0700 19 6 3.6006 2.5176 -6.9036 20 6 3.7095 3.8189 -6.1065 21 7 5.0509 3.9513 -5.5454 22 6 5.8913 2.9189 -5.4194 23 8 6.9767 3.1116 -4.9137 24 6 5.5471 1.5300 -5.8779 25 6 2.0397 1.3188 -4.7907 26 6 1.4139 1.2816 -3.5588 27 7 2.1121 1.2953 -2.4427 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 7.2358 2.5673 0.9845 36 1 5.2224 1.4220 -3.6504 37 1 4.2036 2.5917 -7.8086 38 1 2.5598 2.3365 -7.1716 39 1 3.5077 4.6640 -6.7647 40 1 2.9786 3.8099 -5.2980 41 1 5.3455 4.8272 -5.2506 42 1 5.8736 0.8100 -5.1276 43 1 6.0550 1.3238 -6.8202 44 1 1.4567 1.3083 -5.6997 45 1 0.3355 1.2457 -3.5110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276306168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:11 Heat of formation + Delta-G solvation = 34.566673 kcal Electronic energy + Delta-G solvation = -30308.327450 eV Core-core repulsion = 26328.402780 eV Total energy + Delta-G solvation = -3979.924670 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.34278 -39.45879 -38.07054 -36.99987 -34.91225 -34.51824 -33.13988 -31.55497 -31.05813 -30.67968 -29.67711 -26.46081 -26.00041 -25.05161 -23.88818 -22.59896 -22.13107 -20.99098 -20.11151 -19.23315 -17.96543 -17.04895 -16.77566 -16.50504 -15.86392 -15.73768 -15.17382 -14.93866 -14.82427 -14.79368 -14.17340 -13.81120 -13.79160 -13.59383 -13.44444 -13.32911 -12.91172 -12.77251 -12.60772 -12.33903 -11.97537 -11.89591 -11.70498 -11.60251 -11.37256 -11.10968 -10.84739 -10.74421 -10.70585 -10.43081 -10.11945 -10.04613 -9.64902 -9.16550 -8.82983 -8.59452 -8.46794 -8.23817 -8.01840 -7.51660 -6.93080 -3.38858 1.36292 1.69969 2.63102 3.06037 3.31858 3.47430 3.53407 3.59328 3.91861 4.10780 4.31786 4.55023 4.60793 4.63733 4.81842 4.88044 5.00452 5.03290 5.12040 5.26192 5.38548 5.39754 5.46517 5.59496 5.67321 5.69927 5.76513 5.85224 5.96491 6.18535 6.23427 6.29309 6.37843 6.46110 6.53615 6.67387 6.68158 6.78710 6.86802 6.96005 7.12998 7.21058 7.21535 7.43672 7.82857 8.17404 8.50035 8.57871 9.13884 9.39773 9.95755 10.37209 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.005409 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.729765 B = 5175.513591 C = 6840.703858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.120 4.120 3 C 0.087 3.913 4 N -0.357 5.357 5 C -0.438 4.438 6 H 0.110 0.890 7 C 0.208 3.792 8 N -0.685 5.685 9 Si 0.848 3.152 10 H -0.259 1.259 11 H -0.292 1.292 12 H -0.270 1.270 13 C 0.384 3.616 14 O -0.595 6.595 15 C 0.149 3.851 16 C -0.193 4.193 17 C 0.136 3.864 18 N -0.475 5.475 19 C 0.042 3.958 20 C 0.075 3.925 21 N -0.721 5.721 22 C 0.494 3.506 23 O -0.537 6.537 24 C 0.031 3.969 25 C -0.230 4.230 26 C 0.116 3.884 27 N -0.492 5.492 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.120 0.880 35 H 0.285 0.715 36 H 0.138 0.862 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.402 0.598 42 H 0.125 0.875 43 H 0.118 0.882 44 H 0.124 0.876 45 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 1.200 -14.251 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C -0.037 4.037 4 N -0.066 5.066 5 C -0.557 4.557 6 H 0.127 0.873 7 C -0.029 4.029 8 N -0.304 5.304 9 Si 0.669 3.331 10 H -0.184 1.184 11 H -0.219 1.219 12 H -0.195 1.195 13 C 0.184 3.816 14 O -0.487 6.487 15 C 0.014 3.986 16 C -0.217 4.217 17 C 0.032 3.968 18 N -0.190 5.190 19 C -0.085 4.085 20 C -0.051 4.051 21 N -0.375 5.375 22 C 0.279 3.721 23 O -0.412 6.412 24 C -0.099 4.099 25 C -0.254 4.254 26 C -0.043 4.043 27 N -0.207 5.207 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.155 0.845 37 H 0.110 0.890 38 H 0.123 0.877 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.237 0.763 42 H 0.143 0.857 43 H 0.136 0.864 44 H 0.142 0.858 45 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.577 0.816 -13.517 16.586 hybrid contribution 0.969 0.248 -0.398 1.077 sum -8.608 1.063 -13.914 16.396 Atomic orbital electron populations 1.21617 0.96390 1.00474 1.01179 1.21649 0.94673 0.97960 1.01545 1.22357 0.80858 0.97130 1.03317 1.43877 1.05186 1.52293 1.05270 1.18858 0.89404 1.61658 0.85828 0.87261 1.25016 0.96310 0.96288 0.85271 1.70559 1.10228 1.32105 1.17528 0.87565 0.77725 0.88574 0.79267 1.18356 1.21893 1.19466 1.16918 0.86940 0.96057 0.81728 1.90517 1.12426 1.62730 1.83040 1.21408 0.88643 0.93846 0.94748 1.21997 1.01628 1.06887 0.91229 1.18973 0.93254 0.96419 0.88162 1.59504 1.03758 1.41864 1.13865 1.22663 1.03347 0.86608 0.95835 1.22083 0.84595 0.99717 0.98657 1.45480 1.15525 1.11826 1.64679 1.20895 0.84669 0.88029 0.78472 1.90818 1.22959 1.84535 1.42901 1.22633 0.87968 0.94045 1.05220 1.21413 0.92474 1.12134 0.99376 1.22594 0.99767 0.94128 0.87841 1.68230 1.07507 1.16224 1.28779 0.93717 0.93462 0.92726 0.92069 0.92818 0.92939 0.86293 0.90283 0.84479 0.88983 0.87692 0.89794 0.90889 0.76252 0.85729 0.86438 0.85800 0.83535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -2.20 5.72 -26.73 -0.15 -2.35 16 3 C 0.09 1.81 4.94 -4.04 -0.02 1.79 16 4 N -0.36 -9.17 2.62 -115.83 -0.30 -9.47 16 5 C -0.44 -11.94 9.49 -15.02 -0.14 -12.09 16 6 H 0.11 2.87 8.02 -52.49 -0.42 2.45 16 7 C 0.21 5.78 3.00 -17.45 -0.05 5.73 16 8 N -0.68 -19.32 13.54 55.50 0.75 -18.57 16 9 Si 0.85 21.66 28.24 -169.99 -4.80 16.86 16 10 H -0.26 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.38 10.38 7.56 -12.25 -0.09 10.28 16 14 O -0.60 -18.11 12.31 5.30 0.07 -18.05 16 15 C 0.15 3.33 6.63 -83.06 -0.55 2.78 16 16 C -0.19 -3.93 7.83 -38.82 -0.30 -4.24 16 17 C 0.14 2.11 4.17 -83.63 -0.35 1.76 16 18 N -0.47 -5.97 5.10 -172.32 -0.88 -6.85 16 19 C 0.04 0.36 5.68 -3.67 -0.02 0.34 16 20 C 0.08 0.72 6.65 -4.31 -0.03 0.69 16 21 N -0.72 -9.48 5.51 -61.06 -0.34 -9.82 16 22 C 0.49 8.06 5.92 -11.67 -0.07 7.99 16 23 O -0.54 -11.34 17.82 5.56 0.10 -11.24 16 24 C 0.03 0.43 5.43 -5.19 -0.03 0.40 16 25 C -0.23 -3.09 8.88 -39.13 -0.35 -3.44 16 26 C 0.12 1.69 11.17 -17.63 -0.20 1.49 16 27 N -0.49 -9.18 4.64 -9.90 -0.05 -9.23 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 1.21 7.21 -51.93 -0.37 0.84 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.05 1.04 7.98 -51.93 -0.41 0.63 16 34 H 0.12 2.38 4.92 -60.25 -0.30 2.08 16 35 H 0.29 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.14 3.14 4.83 -52.48 -0.25 2.89 16 37 H 0.09 0.64 8.08 -51.93 -0.42 0.22 16 38 H 0.10 0.70 7.15 -51.93 -0.37 0.33 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.82 7.07 -51.93 -0.37 0.45 16 41 H 0.40 5.10 8.84 -40.82 -0.36 4.74 16 42 H 0.12 2.00 6.36 -51.93 -0.33 1.67 16 43 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.12 1.26 7.25 -52.49 -0.38 0.88 16 45 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 357.01 15.07 5.38 5.38 Total: -1.00 -35.27 357.01 -8.14 -43.41 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -6.08 Total: 8.00 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.99 Total: 9.58 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.81 Total: -53.94 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: 0.16 Total: -29.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.80 Total: 16.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.27 -8.14 -43.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276306168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.973 kcal (2) G-P(sol) polarization free energy of solvation -35.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds