Wall clock time and date at job start Tue Mar 31 2020 16:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 N 1.46503 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.36796 * 119.99821 * 265.70282 * 4 3 2 6 6 H 1.08000 * 119.99780 * 358.10019 * 5 4 3 7 7 C 1.39094 * 119.99861 * 178.10177 * 5 4 3 8 8 N 1.31321 * 120.00480 * 88.64316 * 7 5 4 9 9 Si 1.86807 * 120.00077 * 268.63985 * 7 5 4 10 10 H 1.48499 * 109.46851 * 90.00053 * 9 7 5 11 11 H 1.48493 * 109.47505 * 210.00047 * 9 7 5 12 12 H 1.48506 * 109.47064 * 330.00385 * 9 7 5 13 13 C 1.34771 * 119.99862 * 85.70712 * 4 3 2 14 14 O 1.21571 * 119.99481 * 183.76752 * 13 4 3 15 15 C 1.48023 * 120.00259 * 3.76741 * 13 4 3 16 16 C 1.39133 * 119.69661 * 173.83845 * 15 13 4 17 17 C 1.39405 * 118.95008 * 179.97438 * 16 15 13 18 18 N 1.39197 * 120.82741 * 179.97438 * 17 16 15 19 19 C 1.47197 * 111.00053 * 234.24825 * 18 17 16 20 20 C 1.52991 * 108.72446 * 54.36865 * 19 18 17 21 21 N 1.46006 * 110.04460 * 50.29386 * 20 19 18 22 22 C 1.33718 * 122.92815 * 341.83720 * 21 20 19 23 23 O 1.21280 * 118.62491 * 181.69023 * 22 21 20 24 24 C 1.46901 * 111.00125 * 357.14092 * 18 17 16 25 25 C 1.39456 * 118.34624 * 359.97438 * 17 16 15 26 26 C 1.38224 * 119.27793 * 0.02562 * 25 17 16 27 27 N 1.31652 * 121.00483 * 0.02562 * 26 25 17 28 28 H 1.09000 * 109.46842 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46868 * 300.00238 * 1 2 3 30 30 H 1.08995 * 109.47114 * 59.99883 * 1 2 3 31 31 H 1.08999 * 109.47044 * 239.99485 * 2 1 3 32 32 H 1.09004 * 109.46987 * 119.99837 * 2 1 3 33 33 H 1.09005 * 109.46911 * 60.00040 * 3 2 1 34 34 H 1.08995 * 109.47196 * 300.00067 * 3 2 1 35 35 H 0.96996 * 120.00728 * 184.89534 * 8 7 5 36 36 H 1.08004 * 120.52550 * 0.02562 * 16 15 13 37 37 H 1.08997 * 109.59480 * 174.14059 * 19 18 17 38 38 H 1.08997 * 109.59562 * 294.44541 * 19 18 17 39 39 H 1.09001 * 109.37130 * 170.47049 * 20 19 18 40 40 H 1.08992 * 109.37330 * 290.11424 * 20 19 18 41 41 H 0.97000 * 118.53744 * 161.85895 * 21 20 19 42 42 H 1.08994 * 109.38958 * 47.08876 * 24 18 17 43 43 H 1.09007 * 109.38785 * 166.78210 * 24 18 17 44 44 H 1.07995 * 120.36103 * 179.97438 * 25 17 16 45 45 H 1.08002 * 119.49543 * 179.72054 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1895 1.5310 1.1805 6 1 3.6503 1.6319 2.1108 7 6 5.5799 1.4912 1.1832 8 7 6.2689 2.6016 1.0539 9 14 6.4672 -0.1419 1.3709 10 1 6.7004 -0.7355 0.0298 11 1 7.7702 0.0776 2.0484 12 1 5.6362 -1.0663 2.1836 13 6 4.1784 1.3552 -1.1648 14 8 5.3922 1.2861 -1.1612 15 6 3.4402 1.3436 -2.4478 16 6 4.1431 1.3832 -3.6478 17 6 3.4322 1.3710 -4.8469 18 7 4.0957 1.4100 -6.0700 19 6 3.6006 2.5176 -6.9036 20 6 3.7095 3.8189 -6.1065 21 7 5.0509 3.9513 -5.5454 22 6 5.8913 2.9189 -5.4194 23 8 6.9767 3.1116 -4.9137 24 6 5.5471 1.5300 -5.8779 25 6 2.0397 1.3188 -4.7907 26 6 1.4139 1.2816 -3.5588 27 7 2.1121 1.2953 -2.4427 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 7.2358 2.5673 0.9845 36 1 5.2224 1.4220 -3.6504 37 1 4.2036 2.5917 -7.8086 38 1 2.5598 2.3365 -7.1716 39 1 3.5077 4.6640 -6.7647 40 1 2.9786 3.8099 -5.2980 41 1 5.3455 4.8272 -5.2506 42 1 5.8736 0.8100 -5.1276 43 1 6.0550 1.3238 -6.8202 44 1 1.4567 1.3083 -5.6997 45 1 0.3355 1.2457 -3.5110 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276306168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:10 Heat of formation + Delta-G solvation = 5.768426 kcal Electronic energy + Delta-G solvation = -30309.576236 eV Core-core repulsion = 26328.402780 eV Total energy + Delta-G solvation = -3981.173456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.55615 -41.00932 -39.69648 -38.39103 -36.69786 -35.71015 -35.07426 -33.19022 -32.46565 -31.98637 -30.87090 -27.88932 -27.40933 -26.65751 -25.07356 -24.03242 -23.46360 -22.46852 -21.64445 -20.61006 -19.33331 -18.56143 -18.05819 -17.80635 -17.45636 -17.00282 -16.86085 -16.47172 -16.38174 -16.05316 -15.71236 -15.36574 -15.30245 -14.99799 -14.79015 -14.50566 -14.44305 -14.18361 -14.02942 -13.81798 -13.68196 -13.26262 -12.99617 -12.84180 -12.72001 -12.68182 -12.51567 -12.31411 -12.06352 -12.03136 -12.00547 -11.47323 -11.00399 -10.90492 -10.32219 -10.27354 -10.00947 -9.94406 -9.58943 -9.22793 -9.00331 -5.48785 -0.05924 0.33734 1.21554 1.37194 1.41102 1.42636 1.99246 2.06338 2.24197 2.50910 2.62050 3.06762 3.21684 3.33540 3.55675 3.68860 3.80922 3.90413 4.06066 4.17711 4.27111 4.30805 4.32947 4.45036 4.47169 4.50644 4.61572 4.71472 4.81381 4.82873 4.85520 4.97661 5.01866 5.10252 5.16527 5.24406 5.36070 5.45417 5.51513 5.52985 5.71198 5.74544 5.87712 6.05510 6.09631 6.58025 6.97449 7.05144 7.25138 7.49258 7.92113 8.37549 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011699 B = 0.005409 C = 0.004092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2392.729765 B = 5175.513591 C = 6840.703858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.111 4.111 3 C 0.088 3.912 4 N -0.372 5.372 5 C -0.511 4.511 6 H 0.102 0.898 7 C 0.205 3.795 8 N -0.717 5.717 9 Si 0.872 3.128 10 H -0.299 1.299 11 H -0.275 1.275 12 H -0.257 1.257 13 C 0.374 3.626 14 O -0.642 6.642 15 C 0.127 3.873 16 C -0.209 4.209 17 C 0.146 3.854 18 N -0.463 5.463 19 C 0.037 3.963 20 C 0.068 3.932 21 N -0.716 5.716 22 C 0.487 3.513 23 O -0.603 6.603 24 C 0.036 3.964 25 C -0.183 4.183 26 C 0.115 3.885 27 N -0.493 5.493 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.031 0.969 33 H 0.050 0.950 34 H 0.131 0.869 35 H 0.285 0.715 36 H 0.099 0.901 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.128 0.872 40 H 0.062 0.938 41 H 0.401 0.599 42 H 0.092 0.908 43 H 0.154 0.846 44 H 0.185 0.815 45 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.342 1.143 -19.495 24.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.149 4.149 3 C -0.034 4.034 4 N -0.082 5.082 5 C -0.628 4.628 6 H 0.120 0.880 7 C -0.030 4.030 8 N -0.338 5.338 9 Si 0.693 3.307 10 H -0.227 1.227 11 H -0.201 1.201 12 H -0.181 1.181 13 C 0.172 3.828 14 O -0.536 6.536 15 C -0.008 4.008 16 C -0.234 4.234 17 C 0.041 3.959 18 N -0.177 5.177 19 C -0.087 4.087 20 C -0.056 4.056 21 N -0.367 5.367 22 C 0.273 3.727 23 O -0.483 6.483 24 C -0.094 4.094 25 C -0.205 4.205 26 C -0.044 4.044 27 N -0.207 5.207 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.063 0.937 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.148 0.852 35 H 0.097 0.903 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.164 0.836 39 H 0.146 0.854 40 H 0.080 0.920 41 H 0.236 0.764 42 H 0.110 0.890 43 H 0.171 0.829 44 H 0.202 0.798 45 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -14.730 0.780 -18.727 23.839 hybrid contribution 2.287 0.290 0.542 2.369 sum -12.442 1.071 -18.185 22.060 Atomic orbital electron populations 1.21550 0.92407 1.02018 1.02568 1.21554 0.97903 0.95823 0.99625 1.22571 0.78426 0.98773 1.03652 1.43869 1.06871 1.53256 1.04252 1.18632 0.89388 1.68318 0.86490 0.87999 1.25378 0.97022 0.96880 0.83706 1.70650 1.10297 1.33283 1.19557 0.87160 0.78334 0.88090 0.77136 1.22658 1.20087 1.18069 1.17852 0.86976 0.94337 0.83684 1.90455 1.14978 1.63537 1.84615 1.20892 0.90385 0.96456 0.93061 1.21882 1.00253 1.08257 0.92999 1.19197 0.94322 0.94772 0.87650 1.59626 1.02553 1.43460 1.12106 1.23085 1.06182 0.83996 0.95428 1.22454 0.81752 1.02386 0.99032 1.45628 1.16615 1.11062 1.63437 1.21396 0.84165 0.89438 0.77677 1.90785 1.25963 1.85576 1.46014 1.22571 0.89385 0.91625 1.05839 1.22114 0.91194 1.05817 1.01366 1.23561 1.01973 0.91971 0.86867 1.68089 1.05485 1.15656 1.31481 0.92069 0.92611 0.90779 0.93749 0.95043 0.93101 0.85178 0.90335 0.88259 0.86184 0.83582 0.85398 0.91987 0.76380 0.89017 0.82852 0.79765 0.78086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.91 71.98 0.71 -2.50 16 2 C -0.11 -4.05 5.72 30.60 0.18 -3.88 16 3 C 0.09 3.74 4.94 86.38 0.43 4.16 16 4 N -0.37 -20.37 2.62 -638.64 -1.68 -22.04 16 5 C -0.51 -30.31 9.49 84.12 0.80 -29.51 16 6 H 0.10 5.90 8.02 -2.91 -0.02 5.88 16 7 C 0.20 12.35 3.00 84.97 0.26 12.61 16 8 N -0.72 -43.91 13.54 21.69 0.29 -43.61 16 9 Si 0.87 47.62 28.24 68.60 1.94 49.55 16 10 H -0.30 -18.17 7.11 99.48 0.71 -17.46 16 11 H -0.27 -13.94 7.11 99.48 0.71 -13.24 16 12 H -0.26 -13.24 7.11 99.48 0.71 -12.54 16 13 C 0.37 21.50 7.56 86.84 0.66 22.15 16 14 O -0.64 -42.39 12.31 -3.94 -0.05 -42.44 16 15 C 0.13 5.75 6.63 41.79 0.28 6.03 16 16 C -0.21 -8.51 7.83 22.77 0.18 -8.34 16 17 C 0.15 3.91 4.17 38.55 0.16 4.07 16 18 N -0.46 -9.39 5.10 -699.09 -3.56 -12.96 16 19 C 0.04 0.38 5.68 86.24 0.49 0.87 16 20 C 0.07 0.93 6.65 86.47 0.57 1.50 16 21 N -0.72 -17.52 5.51 -466.08 -2.57 -20.09 16 22 C 0.49 15.92 5.92 87.68 0.52 16.43 16 23 O -0.60 -27.11 17.82 -3.03 -0.05 -27.17 16 24 C 0.04 0.95 5.43 85.42 0.46 1.41 16 25 C -0.18 -3.48 8.88 22.56 0.20 -3.28 16 26 C 0.11 2.58 11.17 84.72 0.95 3.53 16 27 N -0.49 -17.04 4.64 -185.24 -0.86 -17.89 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.04 1.74 7.21 -2.39 -0.02 1.73 16 32 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.05 2.10 7.98 -2.38 -0.02 2.08 16 34 H 0.13 5.09 4.92 -18.82 -0.09 4.99 16 35 H 0.28 16.41 8.31 -92.71 -0.77 15.64 16 36 H 0.10 4.87 4.83 -2.91 -0.01 4.85 16 37 H 0.12 0.74 8.08 -2.39 -0.02 0.73 16 38 H 0.15 0.44 7.15 -2.39 -0.02 0.42 16 39 H 0.13 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 1.04 7.07 -2.39 -0.02 1.02 16 41 H 0.40 9.90 8.84 -92.71 -0.82 9.08 16 42 H 0.09 3.09 6.36 -2.39 -0.02 3.07 16 43 H 0.15 2.87 8.14 -2.38 -0.02 2.86 16 44 H 0.19 1.58 7.25 -2.91 -0.02 1.56 16 45 H 0.20 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -92.48 357.01 0.43 -92.05 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: 0.13 Total: 19.34 kcal Atomic # 6 Polarization: 18.43 SS G_CDS: 6.83 Total: 25.27 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -8.37 Total: -116.60 kcal Atomic # 8 Polarization: -69.51 SS G_CDS: -0.10 Total: -69.61 kcal Atomic # 14 Polarization: 47.62 SS G_CDS: 1.94 Total: 49.55 kcal Total: -92.48 0.43 -92.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276306168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.814 kcal (2) G-P(sol) polarization free energy of solvation -92.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds