Wall clock time and date at job start Tue Mar 31 2020 16:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 N 1.46502 * 109.47104 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00178 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99511 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00228 * 179.97438 * 5 4 3 8 8 C 1.53045 * 109.46042 * 179.97438 * 7 5 4 9 9 C 1.53192 * 109.31029 * 178.62847 * 8 7 5 10 10 N 1.46923 * 108.77662 * 54.63529 * 9 8 7 11 11 S 1.65606 * 120.62889 * 126.36777 * 10 9 8 12 12 O 1.42094 * 104.27817 * 333.92814 * 11 10 9 13 13 O 1.42106 * 104.27580 * 206.07045 * 11 10 9 14 14 C 1.81396 * 104.45103 * 90.00030 * 11 10 9 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 C 1.46931 * 118.74107 * 306.64334 * 10 9 8 25 25 C 1.52760 * 109.00482 * 53.30564 * 24 10 9 26 26 H 1.09001 * 109.46456 * 299.99811 * 1 2 3 27 27 H 1.09003 * 109.47217 * 59.99549 * 1 2 3 28 28 H 1.08998 * 109.47060 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46932 * 240.00263 * 2 1 3 30 30 H 1.09000 * 109.47789 * 119.99992 * 2 1 3 31 31 H 1.08993 * 109.47382 * 60.00386 * 3 2 1 32 32 H 1.09006 * 109.46821 * 299.99903 * 3 2 1 33 33 H 0.96999 * 120.00065 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.45921 * 299.97232 * 7 5 4 35 35 H 1.08998 * 109.49463 * 58.67649 * 8 7 5 36 36 H 1.09001 * 109.49708 * 298.58066 * 8 7 5 37 37 H 1.09004 * 109.58820 * 294.84560 * 9 8 7 38 38 H 1.08997 * 109.70082 * 174.49376 * 9 8 7 39 39 H 1.09002 * 109.47134 * 59.99751 * 14 11 10 40 40 H 1.08998 * 109.46953 * 300.00489 * 14 11 10 41 41 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 42 42 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 43 43 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58620 * 173.14734 * 24 10 9 45 45 H 1.09000 * 109.58287 * 293.56713 * 24 10 9 46 46 H 1.09000 * 109.55779 * 185.55242 * 25 24 10 47 47 H 1.09003 * 109.35959 * 65.50545 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1790 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6859 2.6097 -0.0003 8 6 6.1958 4.0527 -0.0004 9 6 7.7273 4.0489 0.0342 10 7 8.2235 3.2335 -1.0828 11 16 9.3212 3.8528 -2.1571 12 8 9.1002 5.2558 -2.1143 13 8 9.1003 3.1124 -3.3498 14 6 10.9365 3.4406 -1.4420 15 6 12.0470 3.9657 -2.3541 16 6 13.3890 3.6238 -1.7597 17 1 13.4443 3.0855 -0.8251 18 6 14.5462 3.9974 -2.4097 19 7 14.4788 4.6524 -3.5480 20 14 16.2095 3.5730 -1.6732 21 1 16.3315 2.0987 -1.5425 22 1 17.2874 4.0827 -2.5585 23 1 16.3322 4.2006 -0.3329 24 6 7.7227 1.8602 -1.2321 25 6 6.1954 1.8868 -1.2492 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5138 0.8899 31 1 1.6768 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9901 0.6025 -0.0006 34 1 6.0491 2.0959 0.8898 35 1 5.8133 4.5737 0.8773 36 1 5.8535 4.5595 -0.9027 37 1 8.0705 3.6240 0.9775 38 1 8.0996 5.0686 -0.0641 39 1 11.0263 2.3585 -1.3468 40 1 11.0262 3.9005 -0.4579 41 1 11.9574 5.0478 -2.4498 42 1 11.9570 3.5053 -3.3380 43 1 15.2929 4.9156 -4.0051 44 1 8.0900 1.4370 -2.1669 45 1 8.0655 1.2532 -0.3942 46 1 5.8128 0.8662 -1.2604 47 1 5.8531 2.4139 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330696572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:23 Heat of formation + Delta-G solvation = -136.164953 kcal Electronic energy + Delta-G solvation = -26790.474404 eV Core-core repulsion = 22906.297456 eV Total energy + Delta-G solvation = -3884.176949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40614 -38.04382 -36.66594 -36.13989 -35.42311 -33.88873 -33.34700 -32.36524 -31.18221 -31.15581 -27.13558 -25.61660 -24.93416 -23.46456 -22.13981 -21.68586 -21.26920 -20.11558 -18.50048 -17.80937 -17.13911 -16.51468 -16.38390 -16.15543 -15.86646 -15.46795 -15.01853 -14.65863 -14.59345 -14.39437 -14.36340 -13.73981 -13.55358 -13.39725 -13.36040 -12.77184 -12.62074 -12.54786 -12.47643 -12.26884 -11.76033 -11.65273 -11.64402 -11.56818 -11.42329 -11.36712 -11.26979 -11.07196 -10.97249 -10.79585 -10.76281 -10.42511 -10.37845 -9.96049 -9.76134 -9.41273 -9.34490 -8.79851 -8.50548 -6.12666 -4.18453 0.74740 2.39902 2.83665 3.02529 3.26577 3.31561 3.33224 4.27431 4.31088 4.35857 4.38017 4.45024 4.47141 4.54898 4.64530 4.73412 4.89142 4.98598 5.09740 5.12467 5.14269 5.20872 5.22350 5.29415 5.42161 5.48866 5.51093 5.56095 5.59817 5.61784 5.67624 5.70996 5.75861 5.79468 5.91256 6.07535 6.14870 6.20989 6.48822 6.66412 7.16173 7.29649 7.35795 7.79883 7.95660 8.17154 8.84680 9.46217 10.98249 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031680 B = 0.002154 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.618171 B =12997.920929 C =13185.562908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.735 5.735 5 C 0.518 3.482 6 O -0.537 6.537 7 C -0.104 4.104 8 C -0.111 4.111 9 C 0.118 3.882 10 N -1.008 6.008 11 S 2.590 3.410 12 O -0.962 6.962 13 O -0.964 6.964 14 C -0.588 4.588 15 C 0.028 3.972 16 C -0.521 4.521 17 H 0.061 0.939 18 C 0.058 3.942 19 N -0.890 5.890 20 Si 0.900 3.100 21 H -0.276 1.276 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.120 3.880 25 C -0.122 4.122 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.401 0.599 34 H 0.100 0.900 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.099 0.901 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.033 0.967 42 H 0.033 0.967 43 H 0.266 0.734 44 H 0.099 0.901 45 H 0.069 0.931 46 H 0.076 0.924 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.470 -11.294 10.190 27.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.387 5.387 5 C 0.304 3.696 6 O -0.413 6.413 7 C -0.126 4.126 8 C -0.150 4.150 9 C -0.007 4.007 10 N -0.844 5.844 11 S 2.689 3.311 12 O -0.953 6.953 13 O -0.955 6.955 14 C -0.722 4.722 15 C -0.011 4.011 16 C -0.561 4.561 17 H 0.079 0.921 18 C -0.145 4.145 19 N -0.528 5.528 20 Si 0.728 3.272 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.006 4.006 25 C -0.162 4.162 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.235 0.765 34 H 0.118 0.882 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.118 0.882 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.075 0.925 44 H 0.117 0.883 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.078 -9.971 9.241 27.651 hybrid contribution 1.454 -0.996 0.900 1.979 sum -22.624 -10.967 10.141 27.110 Atomic orbital electron populations 1.21681 0.94530 1.02205 1.02380 1.21742 0.97053 0.95824 1.02781 1.21400 0.79734 0.97115 1.02439 1.46064 1.07291 1.08907 1.76467 1.20785 0.90212 0.83397 0.75200 1.90711 1.70462 1.31352 1.48771 1.21327 0.90809 0.99753 1.00703 1.21686 0.94952 0.94165 1.04213 1.21444 0.93928 0.96363 0.89013 1.57997 1.59271 1.22318 1.44825 1.05715 0.76777 0.74224 0.74371 1.93533 1.84808 1.30616 1.86313 1.93524 1.84885 1.73229 1.43846 1.30487 1.18562 1.10739 1.12364 1.18963 0.91457 0.97133 0.93585 1.20964 0.89740 1.37570 1.07795 0.92114 1.25070 0.99591 0.94911 0.94910 1.69945 1.28900 1.38254 1.15693 0.86526 0.82896 0.78775 0.79030 1.20105 1.21072 1.20092 1.21283 0.93350 0.82695 1.03234 1.21802 0.96598 1.00370 0.97407 0.92363 0.92294 0.92136 0.91206 0.91303 0.91577 0.91522 0.76517 0.88196 0.90097 0.90519 0.91413 0.88248 0.86318 0.86277 0.94867 0.94886 0.92469 0.88255 0.91284 0.90547 0.90618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.16 0.37 -0.24 16 2 C -0.14 -0.58 6.05 -26.73 -0.16 -0.74 16 3 C 0.12 0.79 5.67 -4.04 -0.02 0.77 16 4 N -0.73 -5.19 5.44 -60.29 -0.33 -5.52 16 5 C 0.52 5.31 7.15 -10.99 -0.08 5.23 16 6 O -0.54 -7.76 15.98 5.55 0.09 -7.68 16 7 C -0.10 -0.92 2.49 -91.73 -0.23 -1.15 16 8 C -0.11 -1.21 4.65 -26.61 -0.12 -1.34 16 9 C 0.12 1.32 6.43 -3.71 -0.02 1.29 16 10 N -1.01 -12.95 3.23 -113.77 -0.37 -13.32 16 11 S 2.59 45.73 5.45 -107.50 -0.59 45.15 16 12 O -0.96 -19.81 16.59 -57.54 -0.95 -20.77 16 13 O -0.96 -19.46 16.58 -57.54 -0.95 -20.41 16 14 C -0.59 -11.02 6.12 37.16 0.23 -10.79 16 15 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 16 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 20 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 24 C 0.12 1.21 6.40 -3.93 -0.03 1.18 16 25 C -0.12 -1.06 5.25 -26.83 -0.14 -1.20 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.40 1.72 7.87 -40.82 -0.32 1.40 16 34 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 36 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.10 1.22 6.86 -51.93 -0.36 0.86 16 39 H 0.12 1.98 8.14 -51.92 -0.42 1.55 16 40 H 0.12 2.01 8.14 -51.93 -0.42 1.58 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.10 1.09 6.85 -51.93 -0.36 0.73 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.43 7.52 -51.93 -0.39 0.04 16 47 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -36.88 390.58 -10.41 -47.29 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -8.15 Total: -1.52 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: -0.76 Total: -19.52 kcal Atomic # 7 Polarization: -44.54 SS G_CDS: 0.04 Total: -44.50 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -1.82 Total: -48.85 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 45.73 SS G_CDS: -0.59 Total: 45.15 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.88 -10.41 -47.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330696572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.875 kcal (2) G-P(sol) polarization free energy of solvation -36.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds