Wall clock time and date at job start Tue Mar 31 2020 16:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47123 * 2 1 4 4 N 1.46502 * 109.47104 * 180.02562 * 3 2 1 5 5 C 1.34777 * 120.00178 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99511 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.00228 * 179.97438 * 5 4 3 8 8 C 1.53045 * 109.46042 * 179.97438 * 7 5 4 9 9 C 1.53192 * 109.31029 * 178.62847 * 8 7 5 10 10 N 1.46923 * 108.77662 * 54.63529 * 9 8 7 11 11 S 1.65606 * 120.62889 * 126.36777 * 10 9 8 12 12 O 1.42094 * 104.27817 * 333.92814 * 11 10 9 13 13 O 1.42106 * 104.27580 * 206.07045 * 11 10 9 14 14 C 1.81396 * 104.45103 * 90.00030 * 11 10 9 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 11 10 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 C 1.46931 * 118.74107 * 306.64334 * 10 9 8 25 25 C 1.52760 * 109.00482 * 53.30564 * 24 10 9 26 26 H 1.09001 * 109.46456 * 299.99811 * 1 2 3 27 27 H 1.09003 * 109.47217 * 59.99549 * 1 2 3 28 28 H 1.08998 * 109.47060 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46932 * 240.00263 * 2 1 3 30 30 H 1.09000 * 109.47789 * 119.99992 * 2 1 3 31 31 H 1.08993 * 109.47382 * 60.00386 * 3 2 1 32 32 H 1.09006 * 109.46821 * 299.99903 * 3 2 1 33 33 H 0.96999 * 120.00065 * 359.97438 * 4 3 2 34 34 H 1.09002 * 109.45921 * 299.97232 * 7 5 4 35 35 H 1.08998 * 109.49463 * 58.67649 * 8 7 5 36 36 H 1.09001 * 109.49708 * 298.58066 * 8 7 5 37 37 H 1.09004 * 109.58820 * 294.84560 * 9 8 7 38 38 H 1.08997 * 109.70082 * 174.49376 * 9 8 7 39 39 H 1.09002 * 109.47134 * 59.99751 * 14 11 10 40 40 H 1.08998 * 109.46953 * 300.00489 * 14 11 10 41 41 H 1.09002 * 109.47153 * 59.99820 * 15 14 11 42 42 H 1.09001 * 109.46832 * 300.00011 * 15 14 11 43 43 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 44 44 H 1.08996 * 109.58620 * 173.14734 * 24 10 9 45 45 H 1.09000 * 109.58287 * 293.56713 * 24 10 9 46 46 H 1.09000 * 109.55779 * 185.55242 * 25 24 10 47 47 H 1.09003 * 109.35959 * 65.50545 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1790 2.6097 -0.0002 6 8 3.5725 3.6600 0.0002 7 6 5.6859 2.6097 -0.0003 8 6 6.1958 4.0527 -0.0004 9 6 7.7273 4.0489 0.0342 10 7 8.2235 3.2335 -1.0828 11 16 9.3212 3.8528 -2.1571 12 8 9.1002 5.2558 -2.1143 13 8 9.1003 3.1124 -3.3498 14 6 10.9365 3.4406 -1.4420 15 6 12.0470 3.9657 -2.3541 16 6 13.3890 3.6238 -1.7597 17 1 13.4443 3.0855 -0.8251 18 6 14.5462 3.9974 -2.4097 19 7 14.4788 4.6524 -3.5480 20 14 16.2095 3.5730 -1.6732 21 1 16.3315 2.0987 -1.5425 22 1 17.2874 4.0827 -2.5585 23 1 16.3322 4.2006 -0.3329 24 6 7.7227 1.8602 -1.2321 25 6 6.1954 1.8868 -1.2492 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.8935 -0.5138 0.8899 31 1 1.6768 1.9564 0.8899 32 1 1.6767 1.9563 -0.8901 33 1 3.9901 0.6025 -0.0006 34 1 6.0491 2.0959 0.8898 35 1 5.8133 4.5737 0.8773 36 1 5.8535 4.5595 -0.9027 37 1 8.0705 3.6240 0.9775 38 1 8.0996 5.0686 -0.0641 39 1 11.0263 2.3585 -1.3468 40 1 11.0262 3.9005 -0.4579 41 1 11.9574 5.0478 -2.4498 42 1 11.9570 3.5053 -3.3380 43 1 15.2929 4.9156 -4.0051 44 1 8.0900 1.4370 -2.1669 45 1 8.0655 1.2532 -0.3942 46 1 5.8128 0.8662 -1.2604 47 1 5.8531 2.4139 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330696572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:23 Heat of formation + Delta-G solvation = -164.135577 kcal Electronic energy + Delta-G solvation = -26791.687302 eV Core-core repulsion = 22906.297456 eV Total energy + Delta-G solvation = -3885.389846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.19197 -38.89803 -38.20304 -36.97015 -36.76378 -35.87291 -34.09079 -33.11684 -33.04443 -31.99621 -27.81484 -27.51212 -25.71582 -24.28242 -23.50722 -22.57456 -22.19950 -20.92163 -19.72480 -19.11520 -18.47578 -17.85314 -17.24840 -17.03966 -16.99830 -16.69590 -16.52058 -15.80212 -15.68625 -15.25433 -15.16686 -15.04756 -14.59549 -14.46831 -14.23320 -13.85253 -13.71510 -13.57326 -13.42797 -13.32826 -13.16696 -12.97048 -12.88810 -12.84245 -12.78104 -12.44452 -12.21497 -12.14547 -12.13775 -12.03637 -11.78635 -11.74340 -11.60153 -11.57687 -11.09652 -10.80164 -10.62850 -10.09664 -9.88395 -8.24591 -6.38964 -0.68281 1.41896 1.45480 1.53619 1.62220 1.78922 2.22246 2.39312 2.90951 3.08637 3.20831 3.56087 3.73830 3.80051 3.94606 3.96935 4.08625 4.10094 4.17407 4.22697 4.35286 4.40486 4.44612 4.66388 4.72126 4.74399 4.78510 4.79609 4.81004 4.84076 4.89657 4.94448 5.15939 5.16302 5.24975 5.25652 5.28787 5.30177 5.33452 5.37202 5.51277 5.69417 5.72983 6.07300 6.57035 6.74834 7.27327 7.31287 8.87347 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.031680 B = 0.002154 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.618171 B =12997.920929 C =13185.562908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C 0.115 3.885 4 N -0.717 5.717 5 C 0.514 3.486 6 O -0.589 6.589 7 C -0.097 4.097 8 C -0.111 4.111 9 C 0.114 3.886 10 N -0.998 5.998 11 S 2.610 3.390 12 O -0.999 6.999 13 O -0.995 6.995 14 C -0.583 4.583 15 C 0.019 3.981 16 C -0.539 4.539 17 H 0.078 0.922 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.975 3.025 21 H -0.261 1.261 22 H -0.286 1.286 23 H -0.263 1.263 24 C 0.109 3.891 25 C -0.119 4.119 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.055 0.945 32 H 0.048 0.952 33 H 0.418 0.582 34 H 0.140 0.860 35 H 0.086 0.914 36 H 0.041 0.959 37 H 0.110 0.890 38 H 0.081 0.919 39 H 0.145 0.855 40 H 0.142 0.858 41 H 0.003 0.997 42 H 0.005 0.995 43 H 0.267 0.733 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.444 -14.487 13.040 30.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.009 4.009 4 N -0.370 5.370 5 C 0.301 3.699 6 O -0.469 6.469 7 C -0.118 4.118 8 C -0.151 4.151 9 C -0.010 4.010 10 N -0.838 5.838 11 S 2.709 3.291 12 O -0.990 6.990 13 O -0.985 6.985 14 C -0.715 4.715 15 C -0.020 4.020 16 C -0.578 4.578 17 H 0.096 0.904 18 C -0.204 4.204 19 N -0.575 5.575 20 Si 0.799 3.201 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.188 1.188 24 C -0.015 4.015 25 C -0.158 4.158 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.101 0.899 31 H 0.074 0.926 32 H 0.067 0.933 33 H 0.256 0.744 34 H 0.158 0.842 35 H 0.104 0.896 36 H 0.060 0.940 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.163 0.837 40 H 0.160 0.840 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.075 0.925 44 H 0.107 0.893 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.045 -13.221 12.095 29.988 hybrid contribution 1.305 -0.016 0.016 1.305 sum -22.740 -13.237 12.112 28.966 Atomic orbital electron populations 1.21705 0.94512 1.02753 1.02040 1.21685 0.96978 0.93879 1.03830 1.21432 0.79563 0.98769 1.01110 1.45951 1.07484 1.08857 1.74724 1.21099 0.90915 0.83377 0.74504 1.90697 1.71478 1.33323 1.51382 1.21321 0.89626 0.98453 1.02381 1.21642 0.94818 0.95827 1.02765 1.21670 0.93848 0.95750 0.89758 1.57601 1.57747 1.23894 1.44520 1.04762 0.76855 0.73161 0.74356 1.93481 1.85325 1.33175 1.86983 1.93477 1.85330 1.73613 1.46077 1.30355 1.16990 1.12316 1.11824 1.18828 0.93878 0.95364 0.93939 1.21502 0.90688 1.37230 1.08350 0.90400 1.26145 1.04280 0.94693 0.95257 1.70106 1.30052 1.39807 1.17489 0.85350 0.77279 0.79168 0.78352 1.18599 1.21157 1.18783 1.21685 0.94051 0.81073 1.04682 1.21821 0.95702 1.02250 0.96066 0.92560 0.92900 0.91093 0.90354 0.89917 0.92627 0.93318 0.74449 0.84230 0.89572 0.94045 0.87213 0.90012 0.83673 0.84014 0.97897 0.97660 0.92463 0.89300 0.86839 0.86528 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 71.98 0.71 -0.29 16 2 C -0.13 -0.78 6.05 30.60 0.19 -0.59 16 3 C 0.12 1.43 5.67 86.38 0.49 1.92 16 4 N -0.72 -8.43 5.44 -463.05 -2.52 -10.95 16 5 C 0.51 9.76 7.15 87.65 0.63 10.39 16 6 O -0.59 -17.23 15.98 -3.04 -0.05 -17.28 16 7 C -0.10 -1.42 2.49 -11.51 -0.03 -1.45 16 8 C -0.11 -2.31 4.65 30.67 0.14 -2.17 16 9 C 0.11 2.32 6.43 86.36 0.56 2.88 16 10 N -1.00 -23.84 3.23 -513.85 -1.66 -25.50 16 11 S 2.61 92.90 5.45 -56.49 -0.31 92.59 16 12 O -1.00 -42.73 16.59 -127.65 -2.12 -44.85 16 13 O -0.99 -41.02 16.58 -127.65 -2.12 -43.14 16 14 C -0.58 -21.32 6.12 71.98 0.44 -20.88 16 15 C 0.02 0.98 4.98 29.85 0.15 1.13 16 16 C -0.54 -29.57 9.11 25.60 0.23 -29.34 16 17 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 18 C -0.01 -0.31 5.46 84.66 0.46 0.16 16 19 N -0.94 -57.01 13.29 21.45 0.28 -56.72 16 20 Si 0.98 42.88 29.54 68.60 2.03 44.90 16 21 H -0.26 -10.82 7.11 99.48 0.71 -10.12 16 22 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 23 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 24 C 0.11 1.83 6.40 86.22 0.55 2.38 16 25 C -0.12 -1.71 5.25 30.53 0.16 -1.55 16 26 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.08 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.42 1.90 7.87 -92.71 -0.73 1.17 16 34 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.09 1.70 8.07 -2.39 -0.02 1.68 16 36 H 0.04 1.14 8.13 -2.39 -0.02 1.12 16 37 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.08 1.98 6.86 -2.39 -0.02 1.96 16 39 H 0.15 4.49 8.14 -2.39 -0.02 4.47 16 40 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 43 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 44 H 0.09 1.74 6.85 -2.39 -0.02 1.72 16 45 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.12 0.76 7.52 -2.39 -0.02 0.74 16 47 H 0.05 0.95 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -85.28 390.58 -1.56 -86.83 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.22 Total: 11.53 kcal Atomic # 6 Polarization: -42.10 SS G_CDS: 4.68 Total: -37.41 kcal Atomic # 7 Polarization: -89.28 SS G_CDS: -3.89 Total: -93.17 kcal Atomic # 8 Polarization: -100.99 SS G_CDS: -4.28 Total: -105.27 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: 92.90 SS G_CDS: -0.31 Total: 92.59 kcal Total: -85.28 -1.56 -86.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330696572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.303 kcal (2) G-P(sol) polarization free energy of solvation -85.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds