Wall clock time and date at job start Tue Mar 31 2020 16:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46496 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00144 * 269.99868 * 4 3 2 6 6 O 1.21590 * 120.00274 * 180.02562 * 5 4 3 7 7 N 1.34779 * 120.00048 * 0.02562 * 5 4 3 8 8 C 1.46502 * 120.00133 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46744 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46778 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47183 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00146 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00116 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99914 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00071 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47204 * 89.99642 * 15 13 11 17 17 H 1.48493 * 109.47094 * 209.99669 * 15 13 11 18 18 H 1.48505 * 109.47102 * 329.99924 * 15 13 11 19 19 C 1.46499 * 120.00229 * 90.00338 * 4 3 2 20 20 H 1.09001 * 110.01057 * 358.62129 * 19 4 3 21 21 C 1.53877 * 110.02763 * 119.99491 * 19 4 3 22 22 C 1.54170 * 108.70030 * 166.47566 * 21 19 4 23 23 S 1.82922 * 105.08654 * 332.08966 * 22 21 19 24 24 O 1.42103 * 109.35098 * 115.52735 * 23 22 21 25 25 O 1.42097 * 109.35323 * 248.59487 * 23 22 21 26 26 C 1.55043 * 110.02960 * 237.19146 * 19 4 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 30 30 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 31 31 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 33 33 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 34 34 H 0.97001 * 119.99591 * 359.97438 * 7 5 4 35 35 H 1.08996 * 109.46899 * 299.99599 * 8 7 5 36 36 H 1.08996 * 109.47057 * 60.00449 * 8 7 5 37 37 H 1.08996 * 109.47072 * 299.99465 * 9 8 7 38 38 H 1.08997 * 109.47520 * 60.00445 * 9 8 7 39 39 H 1.09004 * 109.47175 * 299.99704 * 10 9 8 40 40 H 1.08999 * 109.47495 * 60.00083 * 10 9 8 41 41 H 0.97002 * 119.99636 * 180.02562 * 14 13 11 42 42 H 1.08999 * 109.65091 * 286.32646 * 21 19 4 43 43 H 1.08996 * 109.64409 * 46.62686 * 21 19 4 44 44 H 1.08994 * 110.32268 * 90.99687 * 22 21 19 45 45 H 1.09003 * 110.31283 * 213.19400 * 22 21 19 46 46 H 1.09001 * 110.79045 * 316.54316 * 26 19 4 47 47 H 1.09000 * 110.79170 * 80.00450 * 26 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.4424 1.1663 6 8 5.3952 1.4428 1.1658 7 7 3.5060 1.4417 2.3338 8 6 4.2390 1.4410 3.6022 9 6 3.2452 1.4397 4.7655 10 6 4.0108 1.4395 6.0902 11 6 3.0320 1.4389 7.2361 12 1 1.9701 1.4390 7.0392 13 6 3.4921 1.4382 8.5358 14 7 2.6379 1.4381 9.5358 15 14 5.3288 1.4386 8.8764 16 1 5.8150 2.8389 8.9676 17 1 5.5947 0.7379 10.1583 18 1 6.0369 0.7396 7.7740 19 6 4.2370 1.4428 -1.2696 20 1 3.5364 1.4183 -2.1043 21 6 5.1264 2.6949 -1.3647 22 6 6.1242 2.5054 -2.5245 23 16 6.3629 0.6967 -2.6567 24 8 5.8703 0.2472 -3.9115 25 8 7.6853 0.3656 -2.2558 26 6 5.1859 0.2185 -1.3355 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 2.5360 1.4417 2.3342 35 1 4.8656 0.5509 3.6592 36 1 4.8657 2.3309 3.6602 37 1 2.6183 2.3295 4.7088 38 1 2.6189 0.5495 4.7074 39 1 4.6381 0.5499 6.1473 40 1 4.6368 2.3299 6.1482 41 1 2.9616 1.4380 10.4502 42 1 4.5065 3.5712 -1.5540 43 1 5.6715 2.8289 -0.4305 44 1 5.7076 2.9009 -3.4508 45 1 7.0699 2.9961 -2.2941 46 1 5.7047 0.0796 -0.3869 47 1 4.6375 -0.6817 -1.6132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343700646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:38 Heat of formation + Delta-G solvation = -106.898422 kcal Electronic energy + Delta-G solvation = -27236.421756 eV Core-core repulsion = 23353.513899 eV Total energy + Delta-G solvation = -3882.907857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78640 -37.41917 -37.23528 -36.30033 -36.02354 -35.14903 -33.29062 -32.64045 -31.39411 -29.88727 -27.31171 -26.53883 -25.22898 -23.21988 -22.15265 -21.94892 -20.71642 -19.63925 -19.13112 -18.17582 -17.38043 -16.87746 -16.67181 -16.25383 -15.78842 -15.74405 -15.09754 -14.94007 -14.78449 -14.54362 -14.43041 -14.14690 -13.88756 -13.49837 -13.11210 -12.90701 -12.72758 -12.66389 -12.46015 -12.38221 -12.28313 -12.23042 -12.00030 -11.86665 -11.71995 -11.63192 -11.20958 -11.12124 -11.00357 -10.92930 -10.68687 -10.23357 -10.02977 -9.84744 -9.71038 -9.26922 -9.20748 -8.76019 -8.58766 -6.09720 -4.08692 -0.27549 2.10790 2.45199 3.01059 3.28988 3.30158 3.36971 3.40975 3.59186 3.80058 4.05109 4.20533 4.27679 4.40127 4.41517 4.45634 4.51199 4.60372 4.83677 4.95713 5.01901 5.17101 5.24486 5.25639 5.30030 5.37926 5.42975 5.54440 5.61204 5.66709 5.69689 5.72029 5.90033 5.96166 6.14445 6.30105 6.39629 6.55353 6.73573 6.75488 7.18328 7.31822 7.71432 7.82510 8.44930 8.47973 8.93797 9.52534 11.03455 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.002633 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.450232 B =10631.487623 C =11972.866222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C 0.107 3.893 4 N -0.621 5.621 5 C 0.705 3.295 6 O -0.586 6.586 7 N -0.737 5.737 8 C 0.130 3.870 9 C -0.113 4.113 10 C -0.010 4.010 11 C -0.523 4.523 12 H 0.071 0.929 13 C 0.067 3.933 14 N -0.903 5.903 15 Si 0.880 3.120 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.264 1.264 19 C 0.176 3.824 20 H 0.110 0.890 21 C -0.136 4.136 22 C -0.586 4.586 23 S 2.392 3.608 24 O -0.942 6.942 25 O -0.934 6.934 26 C -0.609 4.609 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.396 0.604 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.019 0.981 40 H 0.015 0.985 41 H 0.264 0.736 42 H 0.091 0.909 43 H 0.110 0.890 44 H 0.135 0.865 45 H 0.140 0.860 46 H 0.163 0.837 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.489 1.364 -27.469 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.187 4.187 3 C -0.017 4.017 4 N -0.357 5.357 5 C 0.407 3.593 6 O -0.465 6.465 7 N -0.393 5.393 8 C 0.007 3.993 9 C -0.151 4.151 10 C -0.048 4.048 11 C -0.561 4.561 12 H 0.090 0.910 13 C -0.135 4.135 14 N -0.542 5.542 15 Si 0.707 3.293 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.189 1.189 19 C 0.069 3.931 20 H 0.128 0.872 21 C -0.176 4.176 22 C -0.716 4.716 23 S 2.574 3.426 24 O -0.939 6.939 25 O -0.931 6.931 26 C -0.739 4.739 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.037 0.963 40 H 0.033 0.967 41 H 0.073 0.927 42 H 0.110 0.890 43 H 0.129 0.871 44 H 0.154 0.846 45 H 0.158 0.842 46 H 0.181 0.819 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.014 0.825 -27.827 27.839 hybrid contribution -0.191 0.461 0.897 1.027 sum -0.205 1.286 -26.929 26.961 Atomic orbital electron populations 1.21717 0.94730 1.02380 1.02135 1.22030 0.96499 0.96880 1.03248 1.21739 0.78911 0.97371 1.03645 1.47013 1.05951 1.78870 1.03906 1.15932 0.85360 0.77769 0.80256 1.90848 1.11462 1.57982 1.86159 1.45549 1.10062 1.78611 1.05044 1.21571 0.95197 1.02006 0.80545 1.21704 0.97693 1.01647 0.94026 1.19495 0.96388 0.96705 0.92243 1.21081 0.94344 1.51213 0.89429 0.91043 1.25029 0.97769 0.94427 0.96235 1.69912 1.34278 1.50923 0.99050 0.86777 0.86060 0.78603 0.77863 1.20238 1.21364 1.18860 1.21385 0.93385 0.91314 0.86999 0.87196 1.22406 0.97258 0.98800 0.99098 1.30401 1.09103 1.24998 1.07092 1.08917 0.76956 0.79717 0.76964 1.93614 1.81881 1.79411 1.38969 1.93631 1.33991 1.81980 1.83454 1.31175 1.15338 1.06538 1.20892 0.92224 0.92165 0.92559 0.91431 0.91209 0.89779 0.90098 0.76846 0.91780 0.91782 0.92202 0.92159 0.96273 0.96719 0.92670 0.89044 0.87123 0.84644 0.84154 0.81917 0.84578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.91 37.16 0.37 -0.44 16 2 C -0.15 -0.92 6.26 -26.73 -0.17 -1.08 16 3 C 0.11 0.64 5.14 -4.04 -0.02 0.62 16 4 N -0.62 -5.34 2.48 -170.04 -0.42 -5.76 16 5 C 0.71 8.81 7.61 -86.92 -0.66 8.15 16 6 O -0.59 -9.09 12.45 5.29 0.07 -9.03 16 7 N -0.74 -9.14 5.42 -65.22 -0.35 -9.49 16 8 C 0.13 2.01 5.67 -4.04 -0.02 1.98 16 9 C -0.11 -1.99 5.27 -26.73 -0.14 -2.13 16 10 C -0.01 -0.23 4.04 -27.88 -0.11 -0.35 16 11 C -0.52 -14.40 9.66 -34.44 -0.33 -14.73 16 12 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 13 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 14 N -0.90 -27.38 13.96 55.43 0.77 -26.60 16 15 Si 0.88 21.44 27.47 -169.99 -4.67 16.77 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 19 C 0.18 1.26 3.02 -66.39 -0.20 1.06 16 20 H 0.11 0.44 7.84 -51.93 -0.41 0.04 16 21 C -0.14 -0.97 5.77 -25.66 -0.15 -1.12 16 22 C -0.59 -3.44 7.26 37.77 0.27 -3.16 16 23 S 2.39 20.67 6.10 -107.50 -0.66 20.01 16 24 O -0.94 -10.34 18.15 -57.73 -1.05 -11.39 16 25 O -0.93 -12.23 18.15 -57.73 -1.05 -13.28 16 26 C -0.61 -5.01 6.60 38.24 0.25 -4.76 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.33 7.94 -51.93 -0.41 -0.08 16 33 H 0.08 0.47 6.37 -51.93 -0.33 0.14 16 34 H 0.40 4.00 6.20 -40.82 -0.25 3.75 16 35 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 40 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.11 1.10 6.00 -51.93 -0.31 0.78 16 44 H 0.14 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.14 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.16 1.78 5.89 -51.93 -0.31 1.47 16 47 H 0.14 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -37.25 383.78 -10.45 -47.70 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -7.87 Total: -0.58 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.01 Total: -14.14 kcal Atomic # 7 Polarization: -41.86 SS G_CDS: 0.00 Total: -41.86 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -2.03 Total: -33.69 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Atomic # 16 Polarization: 20.67 SS G_CDS: -0.66 Total: 20.01 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.25 -10.45 -47.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343700646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.196 kcal (2) G-P(sol) polarization free energy of solvation -37.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds