Wall clock time and date at job start Tue Mar 31 2020 16:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46496 * 109.46995 * 180.02562 * 3 2 1 5 5 C 1.34774 * 120.00144 * 269.99868 * 4 3 2 6 6 O 1.21590 * 120.00274 * 180.02562 * 5 4 3 7 7 N 1.34779 * 120.00048 * 0.02562 * 5 4 3 8 8 C 1.46502 * 120.00133 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.46744 * 180.02562 * 8 7 5 10 10 C 1.53001 * 109.46778 * 180.02562 * 9 8 7 11 11 C 1.50701 * 109.47183 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00146 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00116 * 179.97438 * 11 10 9 14 14 N 1.31519 * 119.99914 * 179.97438 * 13 11 10 15 15 Si 1.86802 * 120.00071 * 0.02562 * 13 11 10 16 16 H 1.48502 * 109.47204 * 89.99642 * 15 13 11 17 17 H 1.48493 * 109.47094 * 209.99669 * 15 13 11 18 18 H 1.48505 * 109.47102 * 329.99924 * 15 13 11 19 19 C 1.46499 * 120.00229 * 90.00338 * 4 3 2 20 20 H 1.09001 * 110.01057 * 358.62129 * 19 4 3 21 21 C 1.53877 * 110.02763 * 119.99491 * 19 4 3 22 22 C 1.54170 * 108.70030 * 166.47566 * 21 19 4 23 23 S 1.82922 * 105.08654 * 332.08966 * 22 21 19 24 24 O 1.42103 * 109.35098 * 115.52735 * 23 22 21 25 25 O 1.42097 * 109.35323 * 248.59487 * 23 22 21 26 26 C 1.55043 * 110.02960 * 237.19146 * 19 4 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47289 * 299.99953 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99697 * 1 2 3 30 30 H 1.09001 * 109.46832 * 240.00321 * 2 1 3 31 31 H 1.08993 * 109.47194 * 119.99842 * 2 1 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 3 2 1 33 33 H 1.09001 * 109.46998 * 59.99868 * 3 2 1 34 34 H 0.97001 * 119.99591 * 359.97438 * 7 5 4 35 35 H 1.08996 * 109.46899 * 299.99599 * 8 7 5 36 36 H 1.08996 * 109.47057 * 60.00449 * 8 7 5 37 37 H 1.08996 * 109.47072 * 299.99465 * 9 8 7 38 38 H 1.08997 * 109.47520 * 60.00445 * 9 8 7 39 39 H 1.09004 * 109.47175 * 299.99704 * 10 9 8 40 40 H 1.08999 * 109.47495 * 60.00083 * 10 9 8 41 41 H 0.97002 * 119.99636 * 180.02562 * 14 13 11 42 42 H 1.08999 * 109.65091 * 286.32646 * 21 19 4 43 43 H 1.08996 * 109.64409 * 46.62686 * 21 19 4 44 44 H 1.08994 * 110.32268 * 90.99687 * 22 21 19 45 45 H 1.09003 * 110.31283 * 213.19400 * 22 21 19 46 46 H 1.09001 * 110.79045 * 316.54316 * 26 19 4 47 47 H 1.09000 * 110.79170 * 80.00450 * 26 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1793 1.4424 1.1663 6 8 5.3952 1.4428 1.1658 7 7 3.5060 1.4417 2.3338 8 6 4.2390 1.4410 3.6022 9 6 3.2452 1.4397 4.7655 10 6 4.0108 1.4395 6.0902 11 6 3.0320 1.4389 7.2361 12 1 1.9701 1.4390 7.0392 13 6 3.4921 1.4382 8.5358 14 7 2.6379 1.4381 9.5358 15 14 5.3288 1.4386 8.8764 16 1 5.8150 2.8389 8.9676 17 1 5.5947 0.7379 10.1583 18 1 6.0369 0.7396 7.7740 19 6 4.2370 1.4428 -1.2696 20 1 3.5364 1.4183 -2.1043 21 6 5.1264 2.6949 -1.3647 22 6 6.1242 2.5054 -2.5245 23 16 6.3629 0.6967 -2.6567 24 8 5.8703 0.2472 -3.9115 25 8 7.6853 0.3656 -2.2558 26 6 5.1859 0.2185 -1.3355 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 2.5360 1.4417 2.3342 35 1 4.8656 0.5509 3.6592 36 1 4.8657 2.3309 3.6602 37 1 2.6183 2.3295 4.7088 38 1 2.6189 0.5495 4.7074 39 1 4.6381 0.5499 6.1473 40 1 4.6368 2.3299 6.1482 41 1 2.9616 1.4380 10.4502 42 1 4.5065 3.5712 -1.5540 43 1 5.6715 2.8289 -0.4305 44 1 5.7076 2.9009 -3.4508 45 1 7.0699 2.9961 -2.2941 46 1 5.7047 0.0796 -0.3869 47 1 4.6375 -0.6817 -1.6132 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343700646.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:37 Heat of formation + Delta-G solvation = -134.828805 kcal Electronic energy + Delta-G solvation = -27237.632908 eV Core-core repulsion = 23353.513899 eV Total energy + Delta-G solvation = -3884.119009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.62384 -38.25136 -38.05141 -37.10024 -36.95989 -36.17587 -34.93187 -33.46483 -32.87990 -30.57280 -28.86990 -27.08174 -26.04412 -24.53747 -22.95688 -22.56079 -22.17535 -20.69461 -19.83932 -19.09297 -18.74840 -18.01990 -17.47773 -17.11542 -16.78989 -16.56319 -16.29030 -15.79802 -15.65872 -15.60625 -15.31437 -15.17296 -14.76099 -14.69904 -14.29359 -13.80092 -13.68528 -13.63375 -13.44716 -13.28567 -13.13523 -13.12034 -12.85545 -12.78404 -12.64760 -12.59453 -12.25149 -12.17096 -11.89053 -11.79552 -11.74531 -11.58875 -11.56558 -11.32430 -11.29583 -10.89808 -10.75837 -10.17510 -9.58627 -8.29272 -6.32837 -0.93536 1.36872 1.39003 1.42983 1.50390 1.72001 2.08883 2.36412 2.65017 2.83791 3.06804 3.08508 3.44023 3.62020 3.72945 3.92353 4.00696 4.03074 4.09652 4.13467 4.23209 4.37924 4.46272 4.51616 4.57981 4.70639 4.75287 4.82933 4.88878 4.91271 4.91694 4.98076 5.04552 5.11282 5.23344 5.26703 5.41061 5.47831 5.54261 5.56794 5.59589 5.65907 5.85527 6.27800 6.75263 6.94118 7.32115 7.53839 8.87080 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.015055 B = 0.002633 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1859.450232 B =10631.487623 C =11972.866222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.145 4.145 3 C 0.101 3.899 4 N -0.611 5.611 5 C 0.700 3.300 6 O -0.620 6.620 7 N -0.734 5.734 8 C 0.145 3.855 9 C -0.099 4.099 10 C -0.012 4.012 11 C -0.529 4.529 12 H 0.038 0.962 13 C 0.005 3.995 14 N -0.950 5.950 15 Si 0.946 3.054 16 H -0.267 1.267 17 H -0.286 1.286 18 H -0.248 1.248 19 C 0.167 3.833 20 H 0.155 0.845 21 C -0.137 4.137 22 C -0.559 4.559 23 S 2.396 3.604 24 O -0.967 6.967 25 O -0.989 6.989 26 C -0.606 4.606 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.408 0.592 35 H 0.053 0.947 36 H 0.058 0.942 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.019 0.981 40 H 0.020 0.980 41 H 0.266 0.734 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.171 0.829 45 H 0.147 0.853 46 H 0.135 0.865 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.861 2.594 -29.914 30.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C -0.021 4.021 4 N -0.346 5.346 5 C 0.401 3.599 6 O -0.501 6.501 7 N -0.390 5.390 8 C 0.021 3.979 9 C -0.137 4.137 10 C -0.050 4.050 11 C -0.567 4.567 12 H 0.057 0.943 13 C -0.192 4.192 14 N -0.591 5.591 15 Si 0.769 3.231 16 H -0.192 1.192 17 H -0.212 1.212 18 H -0.172 1.172 19 C 0.061 3.939 20 H 0.172 0.828 21 C -0.177 4.177 22 C -0.692 4.692 23 S 2.583 3.417 24 O -0.964 6.964 25 O -0.986 6.986 26 C -0.738 4.738 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.137 0.863 33 H 0.101 0.899 34 H 0.245 0.755 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.137 0.863 43 H 0.098 0.902 44 H 0.189 0.811 45 H 0.165 0.835 46 H 0.153 0.847 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.412 2.022 -30.329 30.399 hybrid contribution -0.212 0.101 1.633 1.650 sum -0.623 2.123 -28.696 28.781 Atomic orbital electron populations 1.21698 0.93991 1.02252 1.02799 1.21985 0.97055 0.96889 1.02427 1.22005 0.77029 0.97539 1.05504 1.47021 1.07028 1.77476 1.03028 1.16113 0.85030 0.77627 0.81095 1.90842 1.13132 1.59335 1.86791 1.45287 1.10524 1.78936 1.04268 1.21140 0.94363 1.01228 0.81181 1.21459 0.97595 1.02018 0.92586 1.19459 0.95776 0.96770 0.92964 1.21462 0.93919 1.50108 0.91206 0.94338 1.25966 1.02800 0.94282 0.96124 1.70058 1.36674 1.52776 0.99616 0.85722 0.80092 0.79191 0.78051 1.19194 1.21173 1.17200 1.21801 0.94112 0.90539 0.87469 0.82783 1.22416 0.97500 0.99803 0.97951 1.30240 1.09631 1.20869 1.08476 1.08581 0.75688 0.81216 0.76187 1.93573 1.81842 1.80896 1.40061 1.93557 1.37157 1.83833 1.84064 1.31071 1.15455 1.08263 1.18983 0.92814 0.92452 0.90932 0.90909 0.93470 0.86331 0.89889 0.75474 0.92885 0.92367 0.91677 0.91997 0.96258 0.96154 0.92539 0.86264 0.90156 0.81095 0.83456 0.84717 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 71.98 0.71 -0.53 16 2 C -0.14 -1.44 6.26 30.60 0.19 -1.25 16 3 C 0.10 0.87 5.14 86.38 0.44 1.31 16 4 N -0.61 -8.92 2.48 -810.16 -2.01 -10.93 16 5 C 0.70 16.65 7.61 179.05 1.36 18.01 16 6 O -0.62 -19.18 12.45 -4.00 -0.05 -19.23 16 7 N -0.73 -17.34 5.42 -478.53 -2.59 -19.93 16 8 C 0.15 4.38 5.67 86.38 0.49 4.87 16 9 C -0.10 -3.41 5.27 30.60 0.16 -3.25 16 10 C -0.01 -0.52 4.04 29.85 0.12 -0.40 16 11 C -0.53 -29.53 9.66 25.60 0.25 -29.28 16 12 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 13 C 0.01 0.30 5.47 84.65 0.46 0.76 16 14 N -0.95 -58.86 13.96 21.45 0.30 -58.56 16 15 Si 0.95 44.04 27.47 68.60 1.88 45.92 16 16 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.25 -10.84 6.54 99.48 0.65 -10.19 16 19 C 0.17 1.87 3.02 45.99 0.14 2.01 16 20 H 0.15 0.42 7.84 -2.39 -0.02 0.40 16 21 C -0.14 -1.52 5.77 31.29 0.18 -1.34 16 22 C -0.56 -4.91 7.26 72.38 0.53 -4.39 16 23 S 2.40 39.57 6.10 -56.49 -0.34 39.23 16 24 O -0.97 -20.03 18.15 -127.47 -2.31 -22.34 16 25 O -0.99 -26.90 18.15 -127.47 -2.31 -29.21 16 26 C -0.61 -9.32 6.60 72.68 0.48 -8.84 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.12 0.29 7.94 -2.39 -0.02 0.27 16 33 H 0.08 0.71 6.37 -2.39 -0.02 0.70 16 34 H 0.41 7.60 6.20 -92.71 -0.58 7.03 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 39 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 40 H 0.02 0.88 7.57 -2.39 -0.02 0.87 16 41 H 0.27 15.40 8.31 -92.71 -0.77 14.62 16 42 H 0.12 0.72 8.14 -2.39 -0.02 0.71 16 43 H 0.08 1.48 6.00 -2.39 -0.01 1.46 16 44 H 0.17 0.38 8.14 -2.39 -0.02 0.36 16 45 H 0.15 1.24 8.14 -2.39 -0.02 1.22 16 46 H 0.13 3.02 5.89 -2.39 -0.01 3.01 16 47 H 0.15 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -83.74 383.78 -1.60 -85.34 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.33 Total: 12.05 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 5.52 Total: -22.32 kcal Atomic # 7 Polarization: -85.12 SS G_CDS: -4.30 Total: -89.42 kcal Atomic # 8 Polarization: -66.11 SS G_CDS: -4.68 Total: -70.78 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Atomic # 16 Polarization: 39.57 SS G_CDS: -0.34 Total: 39.23 kcal Total: -83.74 -1.60 -85.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343700646.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.494 kcal (2) G-P(sol) polarization free energy of solvation -83.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds