Wall clock time and date at job start Tue Mar 31 2020 16:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47046 * 2 1 4 4 N 1.46499 * 109.46971 * 119.99645 * 2 1 3 5 5 C 1.45650 * 117.70241 * 120.00058 * 4 2 1 6 6 C 1.52992 * 110.76938 * 158.09922 * 5 4 2 7 7 N 1.47269 * 108.18958 * 46.72899 * 6 5 4 8 8 S 1.65598 * 121.35438 * 118.47312 * 7 6 5 9 9 O 1.42101 * 104.27852 * 26.09502 * 8 7 6 10 10 O 1.42099 * 104.27496 * 153.94763 * 8 7 6 11 11 C 1.81398 * 104.44932 * 270.02298 * 8 7 6 12 12 C 1.53006 * 109.47003 * 179.97438 * 11 8 7 13 13 C 1.53000 * 109.47057 * 300.00323 * 12 11 8 14 14 C 1.53004 * 109.46825 * 59.99835 * 12 11 8 15 15 C 1.50698 * 109.47124 * 179.97438 * 12 11 8 16 16 H 1.08003 * 119.99591 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00144 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99889 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00166 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46923 * 60.00520 * 19 17 15 21 21 H 1.48499 * 109.47178 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47332 * 300.00492 * 19 17 15 23 23 C 1.47045 * 117.29146 * 298.49391 * 7 6 5 24 24 C 1.33377 * 117.70646 * 300.00400 * 4 2 1 25 25 O 1.21280 * 118.49086 * 4.60006 * 24 4 2 26 26 H 1.08991 * 109.47589 * 300.00080 * 1 2 3 27 27 H 1.09005 * 109.47123 * 60.00259 * 1 2 3 28 28 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47589 * 239.99920 * 2 1 3 30 30 H 1.09004 * 109.46876 * 59.99786 * 3 2 1 31 31 H 1.08997 * 109.47326 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47007 * 299.99881 * 3 2 1 33 33 H 1.08997 * 109.21759 * 37.76934 * 5 4 2 34 34 H 1.08994 * 109.18625 * 278.40597 * 5 4 2 35 35 H 1.08999 * 109.72124 * 287.05414 * 6 5 4 36 36 H 1.09004 * 109.71841 * 166.40496 * 6 5 4 37 37 H 1.08996 * 109.47257 * 299.99808 * 11 8 7 38 38 H 1.09001 * 109.47181 * 60.00166 * 11 8 7 39 39 H 1.08991 * 109.47501 * 59.99502 * 13 12 11 40 40 H 1.08997 * 109.46884 * 180.02562 * 13 12 11 41 41 H 1.09007 * 109.46637 * 299.99822 * 13 12 11 42 42 H 1.09001 * 109.46741 * 60.00213 * 14 12 11 43 43 H 1.08997 * 109.46653 * 179.97438 * 14 12 11 44 44 H 1.08996 * 109.47352 * 299.99690 * 14 12 11 45 45 H 0.97001 * 119.99897 * 179.97438 * 18 17 15 46 46 H 1.09003 * 109.57204 * 282.91578 * 23 7 6 47 47 H 1.09000 * 109.66897 * 162.61968 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8519 -1.8694 1.0046 6 6 3.6989 -2.1430 2.2490 7 7 2.8248 -2.0466 3.4303 8 16 2.5804 -3.3443 4.4296 9 8 3.7509 -4.1343 4.2708 10 8 2.2533 -2.7635 5.6845 11 6 1.1397 -4.1925 3.7257 12 6 0.8103 -5.4249 4.5705 13 6 2.0095 -6.3751 4.5756 14 6 0.4971 -4.9916 6.0041 15 6 -0.3869 -6.1293 3.9862 16 1 -0.8648 -5.7373 3.1005 17 6 -0.8715 -7.2745 4.5815 18 7 -0.2891 -7.7521 5.6597 19 14 -2.3551 -8.1480 3.8568 20 1 -2.0512 -8.5682 2.4652 21 1 -2.6748 -9.3440 4.6768 22 1 -3.5191 -7.2259 3.8523 23 6 2.1776 -0.7513 3.6863 24 6 1.6683 -0.1956 2.3843 25 8 0.9002 0.7424 2.4167 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.5101 -1.7085 0.1509 34 1 2.2140 -2.7311 0.8084 35 1 4.4968 -1.4040 2.3206 36 1 4.1277 -3.1434 2.1894 37 1 0.2855 -3.5155 3.7217 38 1 1.3630 -4.5016 2.7046 39 1 2.8752 -5.8654 4.9984 40 1 1.7747 -7.2532 5.1770 41 1 2.2327 -6.6838 3.5542 42 1 -0.3572 -4.3146 6.0005 43 1 0.2620 -5.8695 6.6058 44 1 1.3628 -4.4820 6.4270 45 1 -0.6303 -8.5576 6.0788 46 1 2.9012 -0.0609 4.1197 47 1 1.3445 -0.8873 4.3759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451386572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:25 Heat of formation + Delta-G solvation = -93.396429 kcal Electronic energy + Delta-G solvation = -29014.368521 eV Core-core repulsion = 25132.046155 eV Total energy + Delta-G solvation = -3882.322366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.84047 -37.02831 -36.70303 -36.34193 -36.00500 -35.40432 -32.17182 -31.70183 -30.11028 -27.31859 -26.89486 -26.25108 -25.77329 -25.26364 -24.21623 -21.75256 -19.75421 -19.13667 -18.28702 -17.74056 -17.20056 -16.22524 -16.11905 -15.92888 -15.55835 -15.38170 -14.79591 -14.68768 -14.29378 -14.04745 -13.57602 -13.40751 -13.27906 -13.12081 -12.90454 -12.65455 -12.56045 -12.31808 -12.20410 -12.02022 -11.82013 -11.75082 -11.46601 -11.33502 -11.19364 -11.10710 -11.06843 -11.00633 -10.76547 -10.48190 -10.33676 -10.18592 -10.02630 -9.70872 -9.53647 -9.07019 -8.87080 -8.71671 -8.43684 -6.07171 -4.19424 0.64259 2.43961 2.64396 2.93726 3.24664 3.30422 3.32027 4.18001 4.22932 4.33683 4.41818 4.47115 4.70641 4.83232 4.93224 5.00549 5.05846 5.10287 5.18139 5.23863 5.31590 5.42526 5.51221 5.52730 5.58616 5.63450 5.66568 5.78554 5.79455 6.00947 6.18269 6.29866 6.30620 6.46158 6.64376 6.73662 6.84047 6.97818 7.25881 7.28009 7.44759 7.63841 7.93289 7.99655 8.04553 8.28277 8.78720 9.46272 10.94137 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.004122 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.271936 B = 6790.734152 C = 7780.575081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.137 3.863 3 C -0.168 4.168 4 N -0.596 5.596 5 C 0.094 3.906 6 C 0.106 3.894 7 N -1.014 6.014 8 S 2.591 3.409 9 O -0.956 6.956 10 O -0.955 6.955 11 C -0.578 4.578 12 C 0.082 3.918 13 C -0.163 4.163 14 C -0.164 4.164 15 C -0.503 4.503 16 H 0.058 0.942 17 C 0.066 3.934 18 N -0.883 5.883 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.114 3.886 24 C 0.514 3.486 25 O -0.540 6.540 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.117 0.883 38 H 0.117 0.883 39 H 0.027 0.973 40 H 0.096 0.904 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.096 0.904 44 H 0.027 0.973 45 H 0.263 0.737 46 H 0.104 0.896 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 13.255 -11.106 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.034 3.966 3 C -0.226 4.226 4 N -0.329 5.329 5 C -0.031 4.031 6 C -0.020 4.020 7 N -0.851 5.851 8 S 2.691 3.309 9 O -0.946 6.946 10 O -0.946 6.946 11 C -0.712 4.712 12 C 0.080 3.920 13 C -0.221 4.221 14 C -0.222 4.222 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.136 4.136 18 N -0.521 5.521 19 Si 0.724 3.276 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.203 1.203 23 C -0.014 4.014 24 C 0.301 3.699 25 O -0.418 6.418 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.106 0.894 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.133 0.867 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.114 0.886 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.121 0.879 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.387 13.402 -10.159 18.368 hybrid contribution -1.265 -0.633 -1.053 1.763 sum 6.123 12.769 -11.212 18.062 Atomic orbital electron populations 1.22281 0.94499 1.02494 1.03924 1.21130 0.95287 0.93412 0.86783 1.22194 1.00637 0.96104 1.03706 1.47325 1.50745 1.28740 1.06103 1.21929 0.94167 0.88022 0.98979 1.21758 0.92223 1.05078 0.82981 1.58393 1.59562 1.24760 1.42341 1.05939 0.77607 0.73024 0.74357 1.93542 1.46347 1.68690 1.86048 1.93556 1.85926 1.76164 1.38941 1.30564 1.16770 1.11958 1.11926 1.17945 0.95984 0.87114 0.90950 1.22273 0.95152 1.03385 1.01262 1.22282 0.98971 1.02191 0.98736 1.20876 1.12107 1.09256 1.11964 0.92399 1.24927 0.96956 0.96901 0.94859 1.69787 1.40335 1.22455 1.19558 0.86594 0.82902 0.79059 0.79062 1.20275 1.21139 1.20258 1.21529 0.99492 0.85513 0.94895 1.20324 0.80744 0.83313 0.85539 1.90647 1.34719 1.29201 1.87197 0.89415 0.92124 0.92711 0.89743 0.90187 0.92950 0.91855 0.89350 0.90789 0.90047 0.86690 0.86443 0.86413 0.95422 0.88579 0.94459 0.94420 0.88565 0.95427 0.92634 0.87861 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.07 37.16 0.34 -1.48 16 2 C 0.14 1.27 3.19 -67.93 -0.22 1.06 16 3 C -0.17 -1.51 9.08 37.16 0.34 -1.17 16 4 N -0.60 -6.23 2.78 -167.30 -0.47 -6.70 16 5 C 0.09 0.78 6.45 -4.50 -0.03 0.75 16 6 C 0.11 1.03 6.48 -3.63 -0.02 1.00 16 7 N -1.01 -13.18 3.24 -114.81 -0.37 -13.55 16 8 S 2.59 45.32 4.48 -107.50 -0.48 44.84 16 9 O -0.96 -18.38 14.33 -57.54 -0.82 -19.21 16 10 O -0.96 -19.15 14.60 -57.54 -0.84 -19.99 16 11 C -0.58 -10.82 5.12 37.16 0.19 -10.63 16 12 C 0.08 1.94 0.52 -155.66 -0.08 1.86 16 13 C -0.16 -3.87 7.78 37.16 0.29 -3.58 16 14 C -0.16 -3.96 7.77 37.16 0.29 -3.67 16 15 C -0.50 -12.92 8.01 -34.44 -0.28 -13.20 16 16 H 0.06 1.45 7.74 -52.48 -0.41 1.05 16 17 C 0.07 1.72 5.15 -17.82 -0.09 1.62 16 18 N -0.88 -23.73 9.35 55.43 0.52 -23.21 16 19 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 C 0.11 1.42 6.34 -5.02 -0.03 1.39 16 24 C 0.51 6.53 6.98 -11.73 -0.08 6.44 16 25 O -0.54 -8.06 12.50 5.56 0.07 -7.99 16 26 H 0.09 1.14 5.75 -51.93 -0.30 0.84 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.60 7.73 -51.93 -0.40 0.20 16 30 H 0.08 0.91 6.08 -51.93 -0.32 0.60 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.48 7.94 -51.93 -0.41 0.07 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 1.09 7.03 -51.93 -0.36 0.73 16 37 H 0.12 2.07 8.14 -51.93 -0.42 1.64 16 38 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 39 H 0.03 0.62 5.46 -51.93 -0.28 0.33 16 40 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 41 H 0.04 0.83 8.14 -51.92 -0.42 0.41 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.10 2.51 6.07 -51.93 -0.32 2.20 16 44 H 0.03 0.63 5.47 -51.93 -0.28 0.34 16 45 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 46 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.12 1.59 7.48 -51.93 -0.39 1.20 16 LS Contribution 364.76 15.07 5.50 5.50 Total: -1.00 -31.84 364.76 -8.88 -40.72 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -7.57 Total: 3.83 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 0.61 Total: -19.61 kcal Atomic # 7 Polarization: -43.13 SS G_CDS: -0.32 Total: -43.45 kcal Atomic # 8 Polarization: -45.60 SS G_CDS: -1.60 Total: -47.19 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 45.32 SS G_CDS: -0.48 Total: 44.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.84 -8.88 -40.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451386572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.676 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds