Wall clock time and date at job start Tue Mar 31 2020 16:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47046 * 2 1 4 4 N 1.46499 * 109.46971 * 119.99645 * 2 1 3 5 5 C 1.45650 * 117.70241 * 120.00058 * 4 2 1 6 6 C 1.52992 * 110.76938 * 158.09922 * 5 4 2 7 7 N 1.47269 * 108.18958 * 46.72899 * 6 5 4 8 8 S 1.65598 * 121.35438 * 118.47312 * 7 6 5 9 9 O 1.42101 * 104.27852 * 26.09502 * 8 7 6 10 10 O 1.42099 * 104.27496 * 153.94763 * 8 7 6 11 11 C 1.81398 * 104.44932 * 270.02298 * 8 7 6 12 12 C 1.53006 * 109.47003 * 179.97438 * 11 8 7 13 13 C 1.53000 * 109.47057 * 300.00323 * 12 11 8 14 14 C 1.53004 * 109.46825 * 59.99835 * 12 11 8 15 15 C 1.50698 * 109.47124 * 179.97438 * 12 11 8 16 16 H 1.08003 * 119.99591 * 0.02562 * 15 12 11 17 17 C 1.37872 * 120.00144 * 179.97438 * 15 12 11 18 18 N 1.31519 * 119.99889 * 0.02562 * 17 15 12 19 19 Si 1.86798 * 120.00166 * 180.02562 * 17 15 12 20 20 H 1.48506 * 109.46923 * 60.00520 * 19 17 15 21 21 H 1.48499 * 109.47178 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47332 * 300.00492 * 19 17 15 23 23 C 1.47045 * 117.29146 * 298.49391 * 7 6 5 24 24 C 1.33377 * 117.70646 * 300.00400 * 4 2 1 25 25 O 1.21280 * 118.49086 * 4.60006 * 24 4 2 26 26 H 1.08991 * 109.47589 * 300.00080 * 1 2 3 27 27 H 1.09005 * 109.47123 * 60.00259 * 1 2 3 28 28 H 1.09002 * 109.47127 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.47589 * 239.99920 * 2 1 3 30 30 H 1.09004 * 109.46876 * 59.99786 * 3 2 1 31 31 H 1.08997 * 109.47326 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47007 * 299.99881 * 3 2 1 33 33 H 1.08997 * 109.21759 * 37.76934 * 5 4 2 34 34 H 1.08994 * 109.18625 * 278.40597 * 5 4 2 35 35 H 1.08999 * 109.72124 * 287.05414 * 6 5 4 36 36 H 1.09004 * 109.71841 * 166.40496 * 6 5 4 37 37 H 1.08996 * 109.47257 * 299.99808 * 11 8 7 38 38 H 1.09001 * 109.47181 * 60.00166 * 11 8 7 39 39 H 1.08991 * 109.47501 * 59.99502 * 13 12 11 40 40 H 1.08997 * 109.46884 * 180.02562 * 13 12 11 41 41 H 1.09007 * 109.46637 * 299.99822 * 13 12 11 42 42 H 1.09001 * 109.46741 * 60.00213 * 14 12 11 43 43 H 1.08997 * 109.46653 * 179.97438 * 14 12 11 44 44 H 1.08996 * 109.47352 * 299.99690 * 14 12 11 45 45 H 0.97001 * 119.99897 * 179.97438 * 18 17 15 46 46 H 1.09003 * 109.57204 * 282.91578 * 23 7 6 47 47 H 1.09000 * 109.66897 * 162.61968 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.8519 -1.8694 1.0046 6 6 3.6989 -2.1430 2.2490 7 7 2.8248 -2.0466 3.4303 8 16 2.5804 -3.3443 4.4296 9 8 3.7509 -4.1343 4.2708 10 8 2.2533 -2.7635 5.6845 11 6 1.1397 -4.1925 3.7257 12 6 0.8103 -5.4249 4.5705 13 6 2.0095 -6.3751 4.5756 14 6 0.4971 -4.9916 6.0041 15 6 -0.3869 -6.1293 3.9862 16 1 -0.8648 -5.7373 3.1005 17 6 -0.8715 -7.2745 4.5815 18 7 -0.2891 -7.7521 5.6597 19 14 -2.3551 -8.1480 3.8568 20 1 -2.0512 -8.5682 2.4652 21 1 -2.6748 -9.3440 4.6768 22 1 -3.5191 -7.2259 3.8523 23 6 2.1776 -0.7513 3.6863 24 6 1.6683 -0.1956 2.3843 25 8 0.9002 0.7424 2.4167 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6766 1.9564 0.8900 31 1 3.1300 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 3.5101 -1.7085 0.1509 34 1 2.2140 -2.7311 0.8084 35 1 4.4968 -1.4040 2.3206 36 1 4.1277 -3.1434 2.1894 37 1 0.2855 -3.5155 3.7217 38 1 1.3630 -4.5016 2.7046 39 1 2.8752 -5.8654 4.9984 40 1 1.7747 -7.2532 5.1770 41 1 2.2327 -6.6838 3.5542 42 1 -0.3572 -4.3146 6.0005 43 1 0.2620 -5.8695 6.6058 44 1 1.3628 -4.4820 6.4270 45 1 -0.6303 -8.5576 6.0788 46 1 2.9012 -0.0609 4.1197 47 1 1.3445 -0.8873 4.3759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451386572.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:24 Heat of formation + Delta-G solvation = -114.475075 kcal Electronic energy + Delta-G solvation = -29015.282560 eV Core-core repulsion = 25132.046155 eV Total energy + Delta-G solvation = -3883.236405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.72170 -38.27747 -38.15772 -37.86079 -37.00554 -36.78327 -33.64412 -32.97618 -30.97689 -28.44845 -28.05379 -27.69506 -27.32100 -27.19065 -25.05081 -22.53952 -21.35245 -20.47126 -19.36765 -18.90925 -18.21917 -17.90100 -17.18142 -17.07247 -16.73959 -16.71423 -16.52850 -15.75123 -15.25175 -14.99687 -14.83352 -14.72213 -14.45925 -14.40555 -14.20650 -13.99768 -13.82270 -13.60031 -13.21268 -13.12286 -13.00959 -12.88654 -12.85488 -12.79172 -12.67366 -12.53055 -12.41431 -12.20712 -12.17608 -12.12168 -11.97684 -11.88339 -11.57403 -11.43700 -10.93213 -10.56615 -10.41458 -10.00287 -9.68777 -8.03645 -6.22121 -0.74534 1.44252 1.45515 1.47675 1.52104 1.61550 1.97843 2.43554 2.83222 3.11312 3.19575 3.38938 3.58068 3.94219 4.00076 4.07100 4.10929 4.13128 4.23325 4.32629 4.42624 4.44529 4.57470 4.60514 4.67278 4.80917 4.83993 4.85466 4.87499 4.93703 4.97089 4.98422 5.01622 5.06567 5.21931 5.37332 5.38171 5.42027 5.51583 5.63978 5.68374 5.97769 6.11239 6.33757 6.44235 6.82037 7.09214 7.46226 8.95886 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.004122 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.271936 B = 6790.734152 C = 7780.575081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.132 3.868 3 C -0.163 4.163 4 N -0.592 5.592 5 C 0.089 3.911 6 C 0.095 3.905 7 N -1.005 6.005 8 S 2.614 3.386 9 O -0.973 6.973 10 O -0.985 6.985 11 C -0.585 4.585 12 C 0.069 3.931 13 C -0.158 4.158 14 C -0.160 4.160 15 C -0.517 4.517 16 H 0.060 0.940 17 C 0.020 3.980 18 N -0.907 5.907 19 Si 0.951 3.049 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.110 3.890 24 C 0.510 3.490 25 O -0.569 6.569 26 H 0.057 0.943 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.118 0.882 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.044 0.956 42 H 0.035 0.965 43 H 0.071 0.929 44 H 0.033 0.967 45 H 0.262 0.738 46 H 0.122 0.878 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.173 13.995 -13.766 21.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.030 3.970 3 C -0.221 4.221 4 N -0.324 5.324 5 C -0.034 4.034 6 C -0.029 4.029 7 N -0.844 5.844 8 S 2.713 3.287 9 O -0.963 6.963 10 O -0.975 6.975 11 C -0.717 4.717 12 C 0.067 3.933 13 C -0.215 4.215 14 C -0.218 4.218 15 C -0.556 4.556 16 H 0.078 0.922 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.778 3.222 20 H -0.195 1.195 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.018 4.018 24 C 0.297 3.703 25 O -0.449 6.449 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.136 0.864 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.158 0.842 39 H 0.053 0.947 40 H 0.089 0.911 41 H 0.063 0.937 42 H 0.055 0.945 43 H 0.090 0.910 44 H 0.052 0.948 45 H 0.071 0.929 46 H 0.140 0.860 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.346 14.113 -12.846 20.829 hybrid contribution -1.521 -0.796 -0.268 1.737 sum 6.825 13.318 -13.113 19.897 Atomic orbital electron populations 1.22236 0.95739 1.01763 1.03288 1.21331 0.94368 0.93981 0.87320 1.22126 1.01227 0.95721 1.02995 1.47427 1.50279 1.28963 1.05720 1.22158 0.94444 0.87242 0.99555 1.22149 0.92534 1.06293 0.81950 1.57971 1.59880 1.23455 1.43108 1.04942 0.76579 0.73189 0.74019 1.93511 1.46546 1.69858 1.86379 1.93513 1.86153 1.76712 1.41159 1.30508 1.18378 1.10453 1.12363 1.17926 0.95317 0.88998 0.91023 1.22181 0.95610 1.02574 1.01182 1.22215 0.99167 1.01041 0.99398 1.21228 1.12889 1.09481 1.12014 0.92162 1.25634 0.99284 0.97785 0.95258 1.69929 1.41427 1.22651 1.20514 0.85717 0.80061 0.77901 0.78570 1.19499 1.21265 1.20100 1.21638 0.99728 0.85297 0.95125 1.20312 0.80612 0.83148 0.86219 1.90655 1.36044 1.30591 1.87623 0.92428 0.90404 0.93399 0.86440 0.93102 0.91844 0.90358 0.85288 0.90514 0.87676 0.86196 0.85706 0.84226 0.94741 0.91143 0.93706 0.94535 0.90996 0.94821 0.92893 0.86032 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.33 9.07 71.98 0.65 -2.68 16 2 C 0.13 2.06 3.19 44.99 0.14 2.20 16 3 C -0.16 -2.51 9.08 71.98 0.65 -1.86 16 4 N -0.59 -10.69 2.78 -802.38 -2.23 -12.92 16 5 C 0.09 1.13 6.45 86.54 0.56 1.69 16 6 C 0.10 1.52 6.48 86.23 0.56 2.08 16 7 N -1.01 -24.07 3.24 -517.13 -1.67 -25.74 16 8 S 2.61 88.54 4.48 -56.49 -0.25 88.29 16 9 O -0.97 -36.02 14.33 -127.65 -1.83 -37.85 16 10 O -0.99 -39.24 14.60 -127.65 -1.86 -41.11 16 11 C -0.58 -21.26 5.12 71.98 0.37 -20.89 16 12 C 0.07 3.26 0.52 -52.93 -0.03 3.24 16 13 C -0.16 -7.49 7.78 71.98 0.56 -6.93 16 14 C -0.16 -7.89 7.77 71.98 0.56 -7.33 16 15 C -0.52 -26.48 8.01 25.60 0.21 -26.27 16 16 H 0.06 2.98 7.74 -2.91 -0.02 2.95 16 17 C 0.02 1.05 5.15 84.65 0.44 1.48 16 18 N -0.91 -49.58 9.35 21.45 0.20 -49.38 16 19 Si 0.95 41.72 29.54 68.60 2.03 43.75 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 22 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 23 C 0.11 2.60 6.34 85.45 0.54 3.14 16 24 C 0.51 12.26 6.98 87.79 0.61 12.87 16 25 O -0.57 -16.92 12.50 -3.03 -0.04 -16.96 16 26 H 0.06 1.49 5.75 -2.39 -0.01 1.48 16 27 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 28 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.12 1.10 7.73 -2.39 -0.02 1.08 16 30 H 0.05 1.11 6.08 -2.38 -0.01 1.10 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.13 0.67 7.94 -2.39 -0.02 0.65 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.12 1.87 7.03 -2.38 -0.02 1.85 16 37 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 38 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 39 H 0.03 1.54 5.46 -2.39 -0.01 1.53 16 40 H 0.07 3.70 6.07 -2.39 -0.01 3.69 16 41 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 44 H 0.03 1.57 5.47 -2.39 -0.01 1.55 16 45 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 46 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 47 H 0.11 2.88 7.48 -2.39 -0.02 2.86 16 Total: -1.00 -69.75 364.76 1.12 -68.63 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.96 Total: 22.55 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 5.82 Total: -39.26 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -3.71 Total: -88.05 kcal Atomic # 8 Polarization: -92.18 SS G_CDS: -3.73 Total: -95.91 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Atomic # 16 Polarization: 88.54 SS G_CDS: -0.25 Total: 88.29 kcal Total: -69.75 1.12 -68.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451386572.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.846 kcal (2) G-P(sol) polarization free energy of solvation -69.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds