Wall clock time and date at job start Tue Mar 31 2020 16:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99524 * 2 1 4 4 N 1.46499 * 109.46769 * 124.99945 * 3 2 1 5 5 C 1.46500 * 119.99868 * 274.99426 * 4 3 2 6 6 C 1.50692 * 109.47514 * 274.99924 * 5 4 3 7 7 H 1.08001 * 120.00081 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00353 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00159 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99615 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46955 * 89.99593 * 10 8 6 12 12 H 1.48498 * 109.46847 * 209.99594 * 10 8 6 13 13 H 1.48500 * 109.47331 * 329.99584 * 10 8 6 14 14 S 1.65604 * 120.00038 * 94.99966 * 4 3 2 15 15 O 1.42091 * 104.27694 * 333.92833 * 14 4 3 16 16 O 1.42102 * 104.27686 * 206.06937 * 14 4 3 17 17 C 1.81403 * 104.44911 * 89.99964 * 14 4 3 18 18 C 1.52998 * 109.46995 * 180.02562 * 17 14 4 19 19 C 1.53006 * 109.47044 * 180.02562 * 18 17 14 20 20 N 1.46898 * 109.46953 * 180.02562 * 19 18 17 21 21 C 1.47015 * 110.99642 * 293.62955 * 20 19 18 22 22 C 1.53098 * 109.25723 * 177.60943 * 21 20 19 23 23 O 1.43023 * 109.25952 * 56.85124 * 22 21 20 24 24 C 1.43014 * 113.73189 * 301.32868 * 23 22 21 25 25 C 1.47016 * 110.99994 * 169.99953 * 20 19 18 26 26 H 1.08004 * 120.00202 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99537 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00313 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47253 * 4.99748 * 3 2 1 30 30 H 1.08999 * 109.46965 * 244.99859 * 3 2 1 31 31 H 1.09001 * 109.47302 * 35.00723 * 5 4 3 32 32 H 1.09003 * 109.46962 * 154.99816 * 5 4 3 33 33 H 0.97004 * 120.00084 * 180.02562 * 9 8 6 34 34 H 1.08994 * 109.47082 * 59.99626 * 17 14 4 35 35 H 1.09000 * 109.47158 * 299.99928 * 17 14 4 36 36 H 1.08994 * 109.47742 * 59.99748 * 18 17 14 37 37 H 1.09009 * 109.47009 * 299.99602 * 18 17 14 38 38 H 1.08994 * 109.47199 * 59.99242 * 19 18 17 39 39 H 1.08996 * 109.46529 * 299.99637 * 19 18 17 40 40 H 1.08999 * 109.50673 * 297.54208 * 21 20 19 41 41 H 1.09004 * 109.50788 * 57.67624 * 21 20 19 42 42 H 1.08997 * 109.51060 * 296.91507 * 22 21 20 43 43 H 1.08998 * 109.54334 * 176.80599 * 22 21 20 44 44 H 1.08999 * 109.51224 * 298.73604 * 24 23 22 45 45 H 1.09005 * 109.53853 * 178.62625 * 24 23 22 46 46 H 1.09000 * 109.50136 * 302.32362 * 25 20 19 47 47 H 1.08996 * 109.50988 * 62.41201 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5283 1.7622 2.4523 6 6 2.5989 3.2646 2.5450 7 1 2.9545 3.8415 1.7040 8 6 2.2087 3.9031 3.7031 9 7 2.2699 5.2142 3.7838 10 14 1.5929 2.9054 5.1575 11 1 2.7377 2.5497 6.0339 12 1 0.6103 3.7088 5.9283 13 1 0.9413 1.6647 4.6664 14 16 4.5712 0.8760 0.9174 15 8 4.5315 -0.0147 -0.1890 16 8 4.9847 0.4308 2.2019 17 6 5.4289 2.4103 0.4689 18 6 6.9132 2.1170 0.2415 19 6 7.6368 3.4112 -0.1361 20 7 9.0618 3.1295 -0.3550 21 6 9.7167 2.7229 0.8968 22 6 11.1820 2.3823 0.6126 23 8 11.8203 3.5111 0.0094 24 6 11.2085 3.9336 -1.2123 25 6 9.7435 4.2900 -0.9465 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3584 2.1317 0.0895 30 1 2.6212 1.4027 -0.9314 31 1 1.4981 1.4372 2.5982 32 1 3.1611 1.3205 3.2221 33 1 1.9956 5.6633 4.5987 34 1 5.3208 3.1359 1.2750 35 1 4.9948 2.8154 -0.4452 36 1 7.0210 1.3915 -0.5647 37 1 7.3477 1.7117 1.1555 38 1 7.5290 4.1363 0.6705 39 1 7.2025 3.8168 -1.0498 40 1 9.6660 3.5402 1.6162 41 1 9.2118 1.8469 1.3040 42 1 11.2328 1.5303 -0.0653 43 1 11.6867 2.1349 1.5465 44 1 11.2599 3.1267 -1.9432 45 1 11.7316 4.8085 -1.5985 46 1 9.2580 4.5578 -1.8849 47 1 9.6926 5.1325 -0.2569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000490106669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:43 Heat of formation + Delta-G solvation = -88.705953 kcal Electronic energy + Delta-G solvation = -27393.906153 eV Core-core repulsion = 23511.787181 eV Total energy + Delta-G solvation = -3882.118972 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.77297 -36.72754 -36.59770 -36.47119 -35.43310 -33.35273 -33.21086 -32.03707 -31.39596 -28.30313 -28.13407 -25.12950 -24.88837 -24.24957 -22.11382 -21.32973 -20.54821 -19.76899 -18.28017 -17.09860 -16.95662 -16.79328 -16.40585 -16.12318 -15.75611 -15.59560 -15.28007 -15.06512 -14.76917 -14.30486 -14.19827 -14.06674 -13.79603 -13.12988 -12.84363 -12.66089 -12.44229 -12.22130 -12.18928 -12.05786 -11.96370 -11.66842 -11.60716 -11.51448 -11.49803 -11.35058 -11.02751 -10.92103 -10.75264 -10.67848 -10.50821 -10.22633 -10.20279 -9.85065 -9.67534 -9.13802 -8.71506 -8.61775 -8.15784 -6.23459 -4.24966 0.77033 2.52648 3.22033 3.27056 3.32411 3.34496 3.49861 3.66988 4.27722 4.30243 4.57789 4.63277 4.73426 4.74070 4.88583 4.91976 4.93658 5.06932 5.10328 5.16032 5.23170 5.29892 5.38008 5.39698 5.39813 5.53218 5.56385 5.59894 5.68432 5.70517 5.80941 5.91355 6.04257 6.13492 6.21268 6.33280 6.72193 6.73525 6.84147 6.89740 6.90926 6.95020 7.10610 7.33581 7.48656 8.32094 8.76904 9.37657 10.88649 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.003339 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.001529 B = 8383.851403 C = 9668.577055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.160 4.160 3 C 0.156 3.844 4 N -0.976 5.976 5 C 0.213 3.787 6 C -0.549 4.549 7 H 0.080 0.920 8 C 0.078 3.922 9 N -0.893 5.893 10 Si 0.869 3.131 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.262 1.262 14 S 2.610 3.390 15 O -0.972 6.972 16 O -0.958 6.958 17 C -0.631 4.631 18 C -0.106 4.106 19 C 0.063 3.937 20 N -0.539 5.539 21 C 0.008 3.992 22 C 0.064 3.936 23 O -0.388 6.388 24 C 0.064 3.936 25 C 0.016 3.984 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.108 0.892 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.046 0.954 33 H 0.266 0.734 34 H 0.146 0.854 35 H 0.127 0.873 36 H 0.082 0.918 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.097 0.903 46 H 0.087 0.913 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.669 -4.099 -10.002 15.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.180 4.180 3 C 0.030 3.970 4 N -0.813 5.813 5 C 0.089 3.911 6 C -0.588 4.588 7 H 0.098 0.902 8 C -0.126 4.126 9 N -0.531 5.531 10 Si 0.695 3.305 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.186 1.186 14 S 2.704 3.296 15 O -0.962 6.962 16 O -0.949 6.949 17 C -0.760 4.760 18 C -0.145 4.145 19 C -0.066 4.066 20 N -0.265 5.265 21 C -0.120 4.120 22 C -0.013 4.013 23 O -0.306 6.306 24 C -0.013 4.013 25 C -0.112 4.112 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.126 0.874 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.164 0.836 35 H 0.146 0.854 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.117 0.883 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.105 0.895 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.164 -5.089 -10.012 15.836 hybrid contribution -0.893 1.062 1.221 1.848 sum 10.271 -4.028 -8.791 14.107 Atomic orbital electron populations 1.23803 0.95827 1.01618 1.01574 1.23467 0.96269 0.99442 0.98776 1.20224 0.93212 0.95585 0.87968 1.57167 1.24441 1.82828 1.16847 1.19614 0.96722 0.95937 0.78781 1.21474 1.45748 0.89953 1.01602 0.90240 1.24843 0.94636 0.94755 0.98360 1.69884 1.47347 1.07770 1.28079 0.86942 0.79570 0.80778 0.83177 1.19632 1.20979 1.18619 1.04831 0.74127 0.76610 0.74053 1.93535 1.86180 1.60987 1.55528 1.93550 1.81969 1.79461 1.39903 1.30696 1.06965 1.25237 1.13067 1.21268 0.91256 0.99102 1.02870 1.22099 0.86548 0.96487 1.01425 1.62235 1.02719 1.35331 1.26193 1.22921 0.95832 1.01903 0.91342 1.22684 0.91450 0.88611 0.98561 1.87980 1.55057 1.48955 1.38619 1.22656 0.91712 1.00164 0.86750 1.22793 0.95685 0.92174 1.00574 0.88344 0.88880 0.87360 0.89310 0.90498 0.94295 0.93569 0.92396 0.83606 0.85426 0.89907 0.90646 0.93628 0.90043 0.93477 0.88979 0.92163 0.88342 0.92240 0.88517 0.89492 0.93735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.63 14.32 29.01 0.42 -2.22 16 2 C -0.16 -2.51 9.84 -36.03 -0.35 -2.86 16 3 C 0.16 2.59 5.70 -5.19 -0.03 2.56 16 4 N -0.98 -18.84 2.68 -116.95 -0.31 -19.15 16 5 C 0.21 4.84 4.48 -5.20 -0.02 4.81 16 6 C -0.55 -14.08 9.94 -34.44 -0.34 -14.42 16 7 H 0.08 2.12 8.06 -52.49 -0.42 1.69 16 8 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 9 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 10 Si 0.87 20.50 27.47 -169.99 -4.67 15.84 16 11 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 14 S 2.61 47.27 5.37 -107.50 -0.58 46.69 16 15 O -0.97 -18.16 16.99 -57.54 -0.98 -19.14 16 16 O -0.96 -20.41 16.53 -57.54 -0.95 -21.36 16 17 C -0.63 -9.39 6.18 37.16 0.23 -9.16 16 18 C -0.11 -1.40 5.16 -26.73 -0.14 -1.53 16 19 C 0.06 0.76 4.96 -3.82 -0.02 0.74 16 20 N -0.54 -6.10 4.73 -234.31 -1.11 -7.21 16 21 C 0.01 0.09 5.44 -3.71 -0.02 0.07 16 22 C 0.06 0.62 7.01 37.21 0.26 0.88 16 23 O -0.39 -4.32 10.83 -35.23 -0.38 -4.70 16 24 C 0.06 0.58 7.01 37.21 0.26 0.84 16 25 C 0.02 0.16 5.64 -3.71 -0.02 0.13 16 26 H 0.10 1.31 7.84 -52.48 -0.41 0.89 16 27 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 28 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.09 1.47 7.76 -51.93 -0.40 1.07 16 30 H 0.08 1.10 7.61 -51.93 -0.40 0.71 16 31 H 0.04 0.88 7.17 -51.93 -0.37 0.51 16 32 H 0.05 1.10 6.24 -51.93 -0.32 0.77 16 33 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 34 H 0.15 2.39 8.14 -51.93 -0.42 1.96 16 35 H 0.13 1.63 8.14 -51.92 -0.42 1.21 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.98 6.52 -51.92 -0.34 0.64 16 38 H 0.05 0.58 8.12 -51.93 -0.42 0.16 16 39 H 0.08 0.89 8.04 -51.93 -0.42 0.48 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 0.97 6.38 -51.93 -0.33 0.64 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 47 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 389.96 15.07 5.88 5.88 Total: -1.00 -32.12 389.96 -10.28 -42.40 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -8.07 Total: 3.72 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 0.12 Total: -18.16 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: -0.65 Total: -51.17 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -2.31 Total: -45.20 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.84 kcal Atomic # 16 Polarization: 47.27 SS G_CDS: -0.58 Total: 46.69 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.12 -10.28 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490106669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.305 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds