Wall clock time and date at job start Tue Mar 31 2020 16:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50703 * 119.99524 * 2 1 4 4 N 1.46499 * 109.46769 * 124.99945 * 3 2 1 5 5 C 1.46500 * 119.99868 * 274.99426 * 4 3 2 6 6 C 1.50692 * 109.47514 * 274.99924 * 5 4 3 7 7 H 1.08001 * 120.00081 * 0.02562 * 6 5 4 8 8 C 1.37882 * 120.00353 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00159 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 119.99615 * 0.02562 * 8 6 5 11 11 H 1.48498 * 109.46955 * 89.99593 * 10 8 6 12 12 H 1.48498 * 109.46847 * 209.99594 * 10 8 6 13 13 H 1.48500 * 109.47331 * 329.99584 * 10 8 6 14 14 S 1.65604 * 120.00038 * 94.99966 * 4 3 2 15 15 O 1.42091 * 104.27694 * 333.92833 * 14 4 3 16 16 O 1.42102 * 104.27686 * 206.06937 * 14 4 3 17 17 C 1.81403 * 104.44911 * 89.99964 * 14 4 3 18 18 C 1.52998 * 109.46995 * 180.02562 * 17 14 4 19 19 C 1.53006 * 109.47044 * 180.02562 * 18 17 14 20 20 N 1.46898 * 109.46953 * 180.02562 * 19 18 17 21 21 C 1.47015 * 110.99642 * 293.62955 * 20 19 18 22 22 C 1.53098 * 109.25723 * 177.60943 * 21 20 19 23 23 O 1.43023 * 109.25952 * 56.85124 * 22 21 20 24 24 C 1.43014 * 113.73189 * 301.32868 * 23 22 21 25 25 C 1.47016 * 110.99994 * 169.99953 * 20 19 18 26 26 H 1.08004 * 120.00202 * 0.02562 * 1 2 3 27 27 H 1.08002 * 119.99537 * 179.97438 * 1 2 3 28 28 H 1.07996 * 120.00313 * 180.02562 * 2 1 3 29 29 H 1.09000 * 109.47253 * 4.99748 * 3 2 1 30 30 H 1.08999 * 109.46965 * 244.99859 * 3 2 1 31 31 H 1.09001 * 109.47302 * 35.00723 * 5 4 3 32 32 H 1.09003 * 109.46962 * 154.99816 * 5 4 3 33 33 H 0.97004 * 120.00084 * 180.02562 * 9 8 6 34 34 H 1.08994 * 109.47082 * 59.99626 * 17 14 4 35 35 H 1.09000 * 109.47158 * 299.99928 * 17 14 4 36 36 H 1.08994 * 109.47742 * 59.99748 * 18 17 14 37 37 H 1.09009 * 109.47009 * 299.99602 * 18 17 14 38 38 H 1.08994 * 109.47199 * 59.99242 * 19 18 17 39 39 H 1.08996 * 109.46529 * 299.99637 * 19 18 17 40 40 H 1.08999 * 109.50673 * 297.54208 * 21 20 19 41 41 H 1.09004 * 109.50788 * 57.67624 * 21 20 19 42 42 H 1.08997 * 109.51060 * 296.91507 * 22 21 20 43 43 H 1.08998 * 109.54334 * 176.80599 * 22 21 20 44 44 H 1.08999 * 109.51224 * 298.73604 * 24 23 22 45 45 H 1.09005 * 109.53853 * 178.62625 * 24 23 22 46 46 H 1.09000 * 109.50136 * 302.32362 * 25 20 19 47 47 H 1.08996 * 109.50988 * 62.41201 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 2.5283 1.7622 2.4523 6 6 2.5989 3.2646 2.5450 7 1 2.9545 3.8415 1.7040 8 6 2.2087 3.9031 3.7031 9 7 2.2699 5.2142 3.7838 10 14 1.5929 2.9054 5.1575 11 1 2.7377 2.5497 6.0339 12 1 0.6103 3.7088 5.9283 13 1 0.9413 1.6647 4.6664 14 16 4.5712 0.8760 0.9174 15 8 4.5315 -0.0147 -0.1890 16 8 4.9847 0.4308 2.2019 17 6 5.4289 2.4103 0.4689 18 6 6.9132 2.1170 0.2415 19 6 7.6368 3.4112 -0.1361 20 7 9.0618 3.1295 -0.3550 21 6 9.7167 2.7229 0.8968 22 6 11.1820 2.3823 0.6126 23 8 11.8203 3.5111 0.0094 24 6 11.2085 3.9336 -1.2123 25 6 9.7435 4.2900 -0.9465 26 1 -0.5401 0.9353 -0.0004 27 1 -0.5399 -0.9354 -0.0004 28 1 1.8501 -0.9352 -0.0004 29 1 1.3584 2.1317 0.0895 30 1 2.6212 1.4027 -0.9314 31 1 1.4981 1.4372 2.5982 32 1 3.1611 1.3205 3.2221 33 1 1.9956 5.6633 4.5987 34 1 5.3208 3.1359 1.2750 35 1 4.9948 2.8154 -0.4452 36 1 7.0210 1.3915 -0.5647 37 1 7.3477 1.7117 1.1555 38 1 7.5290 4.1363 0.6705 39 1 7.2025 3.8168 -1.0498 40 1 9.6660 3.5402 1.6162 41 1 9.2118 1.8469 1.3040 42 1 11.2328 1.5303 -0.0653 43 1 11.6867 2.1349 1.5465 44 1 11.2599 3.1267 -1.9432 45 1 11.7316 4.8085 -1.5985 46 1 9.2580 4.5578 -1.8849 47 1 9.6926 5.1325 -0.2569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000490106669.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:42 Heat of formation + Delta-G solvation = -112.305116 kcal Electronic energy + Delta-G solvation = -27394.929489 eV Core-core repulsion = 23511.787181 eV Total energy + Delta-G solvation = -3883.142309 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.58218 -38.21350 -37.98342 -37.50299 -36.95485 -34.96901 -34.36591 -33.66082 -32.16102 -29.89753 -29.25140 -26.52180 -25.96528 -25.04172 -23.80059 -22.43954 -21.38304 -20.99699 -19.73652 -18.99267 -18.43836 -17.87123 -17.60300 -17.16850 -17.00509 -16.68938 -16.24371 -16.03017 -15.96169 -15.81669 -15.39469 -15.21727 -14.95780 -14.59901 -14.41685 -13.84959 -13.72617 -13.54652 -13.50238 -13.29914 -13.15069 -13.10603 -13.04563 -12.99273 -12.52308 -12.47411 -12.38118 -12.32517 -12.04437 -11.92104 -11.83058 -11.69790 -11.61548 -11.38494 -10.78268 -10.68472 -10.31715 -9.73836 -9.50720 -8.30711 -6.34694 -0.65916 1.30650 1.37099 1.40123 1.47422 1.88260 2.34029 2.59761 2.88682 2.95946 3.05156 3.22224 3.64653 3.71785 3.82332 3.90327 3.96641 4.00711 4.15149 4.16651 4.19746 4.32743 4.36390 4.41063 4.47718 4.60393 4.67722 4.71485 4.73964 4.79530 4.84674 4.88030 4.90050 4.97534 4.99133 5.01413 5.10689 5.32446 5.46535 5.66571 5.77085 5.83589 5.88867 5.96473 6.15509 6.28997 6.70272 7.30793 8.83852 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.012508 B = 0.003339 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.001529 B = 8383.851403 C = 9668.577055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.186 4.186 3 C 0.148 3.852 4 N -0.984 5.984 5 C 0.222 3.778 6 C -0.540 4.540 7 H 0.061 0.939 8 C 0.026 3.974 9 N -0.935 5.935 10 Si 0.918 3.082 11 H -0.272 1.272 12 H -0.280 1.280 13 H -0.246 1.246 14 S 2.612 3.388 15 O -0.978 6.978 16 O -0.995 6.995 17 C -0.610 4.610 18 C -0.109 4.109 19 C 0.065 3.935 20 N -0.543 5.543 21 C 0.004 3.996 22 C 0.065 3.935 23 O -0.406 6.406 24 C 0.062 3.938 25 C 0.014 3.986 26 H 0.104 0.896 27 H 0.114 0.886 28 H 0.103 0.897 29 H 0.086 0.914 30 H 0.098 0.902 31 H 0.042 0.958 32 H 0.036 0.964 33 H 0.267 0.733 34 H 0.131 0.869 35 H 0.153 0.847 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.033 0.967 39 H 0.096 0.904 40 H 0.035 0.965 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.066 0.934 45 H 0.116 0.884 46 H 0.103 0.897 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.671 -4.850 -11.154 16.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.206 4.206 3 C 0.023 3.977 4 N -0.819 5.819 5 C 0.097 3.903 6 C -0.579 4.579 7 H 0.079 0.921 8 C -0.174 4.174 9 N -0.575 5.575 10 Si 0.742 3.258 11 H -0.197 1.197 12 H -0.205 1.205 13 H -0.169 1.169 14 S 2.709 3.291 15 O -0.968 6.968 16 O -0.986 6.986 17 C -0.743 4.743 18 C -0.148 4.148 19 C -0.063 4.063 20 N -0.268 5.268 21 C -0.124 4.124 22 C -0.012 4.012 23 O -0.325 6.325 24 C -0.014 4.014 25 C -0.114 4.114 26 H 0.123 0.877 27 H 0.132 0.868 28 H 0.121 0.879 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.171 0.829 36 H 0.113 0.887 37 H 0.091 0.909 38 H 0.051 0.949 39 H 0.114 0.886 40 H 0.053 0.947 41 H 0.111 0.889 42 H 0.085 0.915 43 H 0.130 0.870 44 H 0.084 0.916 45 H 0.134 0.866 46 H 0.122 0.878 47 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.141 -5.889 -11.181 16.847 hybrid contribution -0.862 1.321 1.462 2.151 sum 10.278 -4.568 -9.719 14.865 Atomic orbital electron populations 1.24046 0.95255 1.02939 0.98639 1.23409 0.96978 0.98729 1.01499 1.20445 0.93251 0.96151 0.87803 1.57120 1.25566 1.82854 1.16391 1.19302 0.96744 0.93782 0.80479 1.21712 1.44074 0.91435 1.00705 0.92059 1.25567 0.95266 0.95518 1.01015 1.69994 1.49266 1.09316 1.28939 0.86137 0.79202 0.80120 0.80296 1.19703 1.20541 1.16918 1.04674 0.73798 0.77380 0.73257 1.93520 1.86189 1.62029 1.55098 1.93499 1.82391 1.80871 1.41827 1.30466 1.07986 1.22146 1.13672 1.21357 0.89918 1.00189 1.03373 1.22049 0.87278 0.95363 1.01648 1.62265 1.02317 1.36039 1.26192 1.22981 0.96834 1.01489 0.91123 1.22759 0.90587 0.88458 0.99400 1.87956 1.55629 1.49411 1.39514 1.22816 0.91219 1.01208 0.86176 1.22893 0.96334 0.91251 1.00911 0.87745 0.86783 0.87873 0.89590 0.88426 0.93981 0.94565 0.92379 0.85034 0.82851 0.88655 0.90896 0.94872 0.88601 0.94692 0.88935 0.91509 0.86994 0.91596 0.86571 0.87843 0.94701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.33 14.32 67.78 0.97 -3.36 16 2 C -0.19 -5.57 9.84 25.65 0.25 -5.32 16 3 C 0.15 4.74 5.70 85.63 0.49 5.23 16 4 N -0.98 -37.34 2.68 -523.92 -1.41 -38.75 16 5 C 0.22 9.98 4.48 85.63 0.38 10.36 16 6 C -0.54 -27.80 9.94 25.60 0.25 -27.55 16 7 H 0.06 3.31 8.06 -2.91 -0.02 3.28 16 8 C 0.03 1.40 5.47 84.66 0.46 1.87 16 9 N -0.94 -54.25 13.96 21.45 0.30 -53.95 16 10 Si 0.92 41.85 27.47 68.60 1.88 43.73 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 13 H -0.25 -10.45 6.54 99.48 0.65 -9.80 16 14 S 2.61 93.23 5.37 -56.49 -0.30 92.93 16 15 O -0.98 -35.47 16.99 -127.65 -2.17 -37.63 16 16 O -1.00 -42.65 16.53 -127.65 -2.11 -44.76 16 17 C -0.61 -17.62 6.18 71.98 0.44 -17.18 16 18 C -0.11 -2.75 5.16 30.60 0.16 -2.59 16 19 C 0.07 1.50 4.96 86.31 0.43 1.92 16 20 N -0.54 -11.58 4.73 -895.22 -4.23 -15.81 16 21 C 0.00 0.08 5.44 86.31 0.47 0.55 16 22 C 0.06 1.19 7.01 72.01 0.50 1.69 16 23 O -0.41 -8.53 10.83 -148.98 -1.61 -10.15 16 24 C 0.06 1.01 7.01 72.01 0.50 1.52 16 25 C 0.01 0.25 5.64 86.31 0.49 0.74 16 26 H 0.10 2.52 7.84 -2.91 -0.02 2.50 16 27 H 0.11 2.40 8.06 -2.91 -0.02 2.37 16 28 H 0.10 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.09 2.76 7.76 -2.39 -0.02 2.74 16 30 H 0.10 2.64 7.61 -2.39 -0.02 2.62 16 31 H 0.04 1.86 7.17 -2.39 -0.02 1.84 16 32 H 0.04 1.72 6.24 -2.39 -0.01 1.70 16 33 H 0.27 14.65 8.31 -92.71 -0.77 13.87 16 34 H 0.13 4.31 8.14 -2.39 -0.02 4.29 16 35 H 0.15 3.62 8.14 -2.39 -0.02 3.60 16 36 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.07 1.87 6.52 -2.38 -0.02 1.86 16 38 H 0.03 0.84 8.12 -2.39 -0.02 0.82 16 39 H 0.10 1.90 8.04 -2.39 -0.02 1.88 16 40 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.09 1.91 6.38 -2.38 -0.02 1.90 16 42 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 46 H 0.10 1.49 8.09 -2.39 -0.02 1.48 16 47 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -68.10 389.96 -2.97 -71.07 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.87 Total: 25.44 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 5.81 Total: -32.12 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -5.34 Total: -108.51 kcal Atomic # 8 Polarization: -86.65 SS G_CDS: -5.89 Total: -92.54 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.88 Total: 43.73 kcal Atomic # 16 Polarization: 93.23 SS G_CDS: -0.30 Total: 92.93 kcal Total: -68.10 -2.97 -71.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000490106669.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.231 kcal (2) G-P(sol) polarization free energy of solvation -68.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds