Wall clock time and date at job start Tue Mar 31 2020 16:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46981 * 2 1 4 4 N 1.46504 * 109.47136 * 120.00071 * 2 1 3 5 5 C 1.46501 * 119.99800 * 304.40471 * 4 2 1 6 6 C 1.50700 * 109.47657 * 263.67400 * 5 4 2 7 7 H 1.08006 * 119.99457 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00376 * 179.97438 * 6 5 4 9 9 N 1.31525 * 119.99872 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00322 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46899 * 90.00094 * 10 8 6 12 12 H 1.48495 * 109.47499 * 210.00292 * 10 8 6 13 13 H 1.48500 * 109.47250 * 330.00749 * 10 8 6 14 14 C 1.34770 * 120.00254 * 124.41096 * 4 2 1 15 15 O 1.21364 * 119.99760 * 354.60047 * 14 4 2 16 16 C 1.49350 * 120.00229 * 174.60404 * 14 4 2 17 17 O 1.21378 * 120.00272 * 0.52617 * 16 14 4 18 18 N 1.34779 * 120.00172 * 180.52579 * 16 14 4 19 19 C 1.39775 * 119.99992 * 185.01014 * 18 16 14 20 20 C 1.39289 * 120.87540 * 325.20775 * 19 18 16 21 21 N 1.32258 * 119.00786 * 179.76653 * 20 19 18 22 22 C 1.31808 * 120.89860 * 0.52614 * 21 20 19 23 23 C 1.50694 * 119.03306 * 179.70587 * 22 21 20 24 24 C 1.52995 * 117.50089 * 8.64206 * 23 22 21 25 25 C 1.52992 * 60.00205 * 252.50993 * 24 23 22 26 26 N 1.31803 * 121.93376 * 359.72366 * 22 21 20 27 27 C 1.32254 * 120.90322 * 0.02562 * 26 22 21 28 28 H 1.09003 * 109.47286 * 299.99844 * 1 2 3 29 29 H 1.08999 * 109.47226 * 60.00132 * 1 2 3 30 30 H 1.09002 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47298 * 240.00056 * 2 1 3 32 32 H 1.08995 * 109.47202 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47032 * 299.99986 * 3 2 1 34 34 H 1.09003 * 109.46983 * 59.99971 * 3 2 1 35 35 H 1.08999 * 109.47406 * 23.67793 * 5 4 2 36 36 H 1.09007 * 109.47015 * 143.67045 * 5 4 2 37 37 H 0.97000 * 119.99955 * 179.97438 * 9 8 6 38 38 H 0.97005 * 119.99634 * 5.00918 * 18 16 14 39 39 H 1.07995 * 120.49996 * 0.02874 * 20 19 18 40 40 H 1.09004 * 115.55228 * 154.35054 * 23 22 21 41 41 H 1.09008 * 117.49801 * 0.02562 * 24 23 22 42 42 H 1.09000 * 117.50411 * 145.02022 * 24 23 22 43 43 H 1.08996 * 117.50246 * 252.50902 * 25 24 23 44 44 H 1.08997 * 117.50122 * 107.48477 * 25 24 23 45 45 H 1.08001 * 120.50142 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5866 -0.2489 2.5246 6 6 2.6239 0.6754 3.1085 7 1 3.5154 0.9105 2.5460 8 6 2.4343 1.2215 4.3601 9 7 1.3484 0.9355 5.0448 10 14 3.7204 2.3666 5.0841 11 1 3.4097 3.7667 4.6988 12 1 3.7125 2.2472 6.5643 13 1 5.0614 1.9963 4.5648 14 6 2.8648 -1.7323 1.0746 15 8 3.1457 -2.1606 -0.0257 16 6 3.4571 -2.3595 2.2937 17 8 3.1687 -1.9373 3.3946 18 7 4.3119 -3.3944 2.1716 19 6 4.7846 -4.0488 3.3126 20 6 5.0263 -3.3464 4.4909 21 7 5.4689 -4.0034 5.5500 22 6 5.6908 -5.3016 5.4971 23 6 6.2014 -6.0070 6.7270 24 6 6.2430 -5.2101 8.0324 25 6 7.5433 -5.5463 7.2997 26 7 5.4794 -6.0009 4.4001 27 6 5.0325 -5.4195 3.2995 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6361 0.2782 2.4412 36 1 1.4655 -1.1158 3.1742 37 1 1.2152 1.3195 5.9256 38 1 4.5990 -3.6850 1.2917 39 1 4.8508 -2.2819 4.5403 40 1 5.9642 -7.0688 6.7926 41 1 5.9006 -4.1756 8.0017 42 1 6.0330 -5.7475 8.9571 43 1 8.1887 -6.3050 7.7422 44 1 8.0568 -4.7331 6.7868 45 1 4.8620 -5.9987 2.4040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615099480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:34 Heat of formation + Delta-G solvation = 25.069717 kcal Electronic energy + Delta-G solvation = -28893.867421 eV Core-core repulsion = 24913.530932 eV Total energy + Delta-G solvation = -3980.336489 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36342 -40.20226 -38.38001 -37.04978 -36.27357 -34.82623 -33.63189 -32.86074 -31.33715 -30.29195 -27.29750 -26.78621 -25.75350 -24.74411 -23.76288 -23.01026 -22.41053 -21.33218 -20.64618 -19.22333 -17.87423 -17.38436 -16.99102 -16.63326 -16.62525 -16.21144 -15.29695 -15.25064 -14.76148 -14.65199 -14.32258 -14.12564 -13.79960 -13.60032 -13.48994 -13.23039 -12.52596 -12.36479 -12.26089 -11.87624 -11.81412 -11.64844 -11.58225 -11.31375 -11.24053 -11.10051 -10.93415 -10.87809 -10.73923 -10.62536 -10.54318 -10.40597 -10.25541 -9.99744 -9.65798 -9.21110 -8.79936 -8.38646 -8.27773 -7.92673 -6.07158 -4.08915 0.80356 1.14207 1.97652 2.64910 3.27330 3.35652 3.37318 3.46691 3.71368 3.78890 3.94369 4.05175 4.26690 4.40599 4.55735 4.80631 4.82344 4.92281 4.96699 5.02564 5.29284 5.33427 5.41615 5.52726 5.55214 5.68264 5.69656 5.89801 5.98351 6.01338 6.03003 6.09040 6.19685 6.22068 6.30317 6.56537 6.60344 6.66690 6.86516 7.01819 7.16139 7.33713 7.39346 7.81192 8.00365 8.11972 8.15588 8.19979 8.53584 8.90519 9.53451 11.01710 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003977 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.568695 B = 7038.625496 C = 8874.604352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 C -0.155 4.155 4 N -0.551 5.551 5 C 0.227 3.773 6 C -0.511 4.511 7 H 0.054 0.946 8 C 0.071 3.929 9 N -0.889 5.889 10 Si 0.890 3.110 11 H -0.282 1.282 12 H -0.285 1.285 13 H -0.276 1.276 14 C 0.510 3.490 15 O -0.562 6.562 16 C 0.489 3.511 17 O -0.427 6.427 18 N -0.652 5.652 19 C 0.050 3.950 20 C 0.154 3.846 21 N -0.495 5.495 22 C 0.318 3.682 23 C -0.097 4.097 24 C -0.155 4.155 25 C -0.158 4.158 26 N -0.499 5.499 27 C 0.124 3.876 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.038 0.962 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.420 0.580 39 H 0.189 0.811 40 H 0.126 0.874 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -9.905 -3.177 11.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 C -0.213 4.213 4 N -0.282 5.282 5 C 0.108 3.892 6 C -0.550 4.550 7 H 0.072 0.928 8 C -0.132 4.132 9 N -0.527 5.527 10 Si 0.718 3.282 11 H -0.208 1.208 12 H -0.211 1.211 13 H -0.201 1.201 14 C 0.292 3.708 15 O -0.444 6.444 16 C 0.270 3.730 17 O -0.293 6.293 18 N -0.302 5.302 19 C -0.051 4.051 20 C -0.014 4.014 21 N -0.208 5.208 22 C 0.051 3.949 23 C -0.117 4.117 24 C -0.193 4.193 25 C -0.196 4.196 26 N -0.212 5.212 27 C -0.045 4.045 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.258 0.742 39 H 0.205 0.795 40 H 0.144 0.856 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.114 0.886 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.873 -10.131 -1.970 11.875 hybrid contribution 0.423 1.013 -0.767 1.339 sum 6.295 -9.118 -2.737 11.413 Atomic orbital electron populations 1.22132 0.94951 1.02016 1.02637 1.21058 0.94151 0.93615 0.88239 1.22091 1.01391 0.95376 1.02421 1.48388 1.41302 1.27879 1.10589 1.19947 0.96037 0.97355 0.75856 1.21157 1.05398 1.26878 1.01571 0.92761 1.24784 0.95392 0.96516 0.96521 1.69908 1.26141 1.43999 1.12698 0.86637 0.82080 0.80962 0.78551 1.20780 1.21108 1.20052 1.19567 0.81160 0.82070 0.87996 1.90655 1.62668 1.63904 1.27133 1.20598 0.80384 0.80641 0.91338 1.90999 1.55183 1.56496 1.26645 1.43081 1.45830 1.33166 1.08165 1.19582 1.01013 0.93668 0.90801 1.23769 0.89283 1.01890 0.86482 1.68187 1.12976 1.09659 1.29982 1.22051 0.93504 0.86905 0.92392 1.20533 1.02361 0.98840 0.89939 1.23042 1.00261 1.02293 0.93662 1.22969 0.90136 1.03310 1.03225 1.68036 1.13617 1.40233 0.99295 1.23059 0.94660 0.89680 0.97112 0.91174 0.91891 0.92775 0.89234 0.92768 0.92713 0.90312 0.94463 0.91982 0.92805 0.74220 0.79450 0.85569 0.86981 0.88287 0.88136 0.88608 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.10 37.16 0.34 -2.04 16 2 C 0.13 2.26 3.25 -67.93 -0.22 2.03 16 3 C -0.15 -2.54 8.91 37.16 0.33 -2.21 16 4 N -0.55 -11.05 2.38 -168.01 -0.40 -11.45 16 5 C 0.23 5.30 4.11 -5.19 -0.02 5.27 16 6 C -0.51 -13.04 6.81 -34.44 -0.23 -13.27 16 7 H 0.05 1.41 7.81 -52.48 -0.41 1.00 16 8 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 9 N -0.89 -24.91 13.29 55.43 0.74 -24.17 16 10 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 14 C 0.51 9.98 7.67 -11.64 -0.09 9.89 16 15 O -0.56 -10.91 15.82 5.48 0.09 -10.82 16 16 C 0.49 9.23 7.59 -11.63 -0.09 9.15 16 17 O -0.43 -9.45 9.61 5.47 0.05 -9.40 16 18 N -0.65 -9.77 5.35 -10.11 -0.05 -9.83 16 19 C 0.05 0.75 6.35 -83.45 -0.53 0.22 16 20 C 0.15 2.67 9.98 -16.98 -0.17 2.50 16 21 N -0.49 -8.28 9.33 -10.57 -0.10 -8.38 16 22 C 0.32 4.79 7.31 -157.18 -1.15 3.64 16 23 C -0.10 -1.15 6.23 -91.78 -0.57 -1.73 16 24 C -0.15 -1.68 10.01 -26.74 -0.27 -1.95 16 25 C -0.16 -1.60 10.23 -26.74 -0.27 -1.87 16 26 N -0.50 -7.23 10.32 -10.56 -0.11 -7.34 16 27 C 0.12 1.63 11.26 -16.98 -0.19 1.44 16 28 H 0.07 1.14 6.51 -51.93 -0.34 0.80 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.50 6.91 -51.93 -0.36 1.14 16 32 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.46 7.27 -51.93 -0.38 1.08 16 35 H 0.04 0.90 6.21 -51.93 -0.32 0.58 16 36 H 0.06 1.61 5.83 -51.92 -0.30 1.30 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.42 5.22 8.31 -40.82 -0.34 4.88 16 39 H 0.19 3.62 6.30 -52.49 -0.33 3.29 16 40 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.11 1.44 7.54 -51.92 -0.39 1.05 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.17 1.61 8.06 -52.49 -0.42 1.19 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -30.12 375.43 -8.49 -38.61 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.11 Total: 8.26 kcal Atomic # 6 Polarization: 16.10 SS G_CDS: -3.23 Total: 12.87 kcal Atomic # 7 Polarization: -61.25 SS G_CDS: 0.08 Total: -61.18 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: 0.14 Total: -20.23 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.12 -8.49 -38.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615099480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.680 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds