Wall clock time and date at job start Tue Mar 31 2020 16:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46981 * 2 1 4 4 N 1.46504 * 109.47136 * 120.00071 * 2 1 3 5 5 C 1.46501 * 119.99800 * 304.40471 * 4 2 1 6 6 C 1.50700 * 109.47657 * 263.67400 * 5 4 2 7 7 H 1.08006 * 119.99457 * 0.02562 * 6 5 4 8 8 C 1.37870 * 120.00376 * 179.97438 * 6 5 4 9 9 N 1.31525 * 119.99872 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00322 * 179.97438 * 8 6 5 11 11 H 1.48508 * 109.46899 * 90.00094 * 10 8 6 12 12 H 1.48495 * 109.47499 * 210.00292 * 10 8 6 13 13 H 1.48500 * 109.47250 * 330.00749 * 10 8 6 14 14 C 1.34770 * 120.00254 * 124.41096 * 4 2 1 15 15 O 1.21364 * 119.99760 * 354.60047 * 14 4 2 16 16 C 1.49350 * 120.00229 * 174.60404 * 14 4 2 17 17 O 1.21378 * 120.00272 * 0.52617 * 16 14 4 18 18 N 1.34779 * 120.00172 * 180.52579 * 16 14 4 19 19 C 1.39775 * 119.99992 * 185.01014 * 18 16 14 20 20 C 1.39289 * 120.87540 * 325.20775 * 19 18 16 21 21 N 1.32258 * 119.00786 * 179.76653 * 20 19 18 22 22 C 1.31808 * 120.89860 * 0.52614 * 21 20 19 23 23 C 1.50694 * 119.03306 * 179.70587 * 22 21 20 24 24 C 1.52995 * 117.50089 * 8.64206 * 23 22 21 25 25 C 1.52992 * 60.00205 * 252.50993 * 24 23 22 26 26 N 1.31803 * 121.93376 * 359.72366 * 22 21 20 27 27 C 1.32254 * 120.90322 * 0.02562 * 26 22 21 28 28 H 1.09003 * 109.47286 * 299.99844 * 1 2 3 29 29 H 1.08999 * 109.47226 * 60.00132 * 1 2 3 30 30 H 1.09002 * 109.47164 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47298 * 240.00056 * 2 1 3 32 32 H 1.08995 * 109.47202 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47032 * 299.99986 * 3 2 1 34 34 H 1.09003 * 109.46983 * 59.99971 * 3 2 1 35 35 H 1.08999 * 109.47406 * 23.67793 * 5 4 2 36 36 H 1.09007 * 109.47015 * 143.67045 * 5 4 2 37 37 H 0.97000 * 119.99955 * 179.97438 * 9 8 6 38 38 H 0.97005 * 119.99634 * 5.00918 * 18 16 14 39 39 H 1.07995 * 120.49996 * 0.02874 * 20 19 18 40 40 H 1.09004 * 115.55228 * 154.35054 * 23 22 21 41 41 H 1.09008 * 117.49801 * 0.02562 * 24 23 22 42 42 H 1.09000 * 117.50411 * 145.02022 * 24 23 22 43 43 H 1.08996 * 117.50246 * 252.50902 * 25 24 23 44 44 H 1.08997 * 117.50122 * 107.48477 * 25 24 23 45 45 H 1.08001 * 120.50142 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.5866 -0.2489 2.5246 6 6 2.6239 0.6754 3.1085 7 1 3.5154 0.9105 2.5460 8 6 2.4343 1.2215 4.3601 9 7 1.3484 0.9355 5.0448 10 14 3.7204 2.3666 5.0841 11 1 3.4097 3.7667 4.6988 12 1 3.7125 2.2472 6.5643 13 1 5.0614 1.9963 4.5648 14 6 2.8648 -1.7323 1.0746 15 8 3.1457 -2.1606 -0.0257 16 6 3.4571 -2.3595 2.2937 17 8 3.1687 -1.9373 3.3946 18 7 4.3119 -3.3944 2.1716 19 6 4.7846 -4.0488 3.3126 20 6 5.0263 -3.3464 4.4909 21 7 5.4689 -4.0034 5.5500 22 6 5.6908 -5.3016 5.4971 23 6 6.2014 -6.0070 6.7270 24 6 6.2430 -5.2101 8.0324 25 6 7.5433 -5.5463 7.2997 26 7 5.4794 -6.0009 4.4001 27 6 5.0325 -5.4195 3.2995 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 0.6361 0.2782 2.4412 36 1 1.4655 -1.1158 3.1742 37 1 1.2152 1.3195 5.9256 38 1 4.5990 -3.6850 1.2917 39 1 4.8508 -2.2819 4.5403 40 1 5.9642 -7.0688 6.7926 41 1 5.9006 -4.1756 8.0017 42 1 6.0330 -5.7475 8.9571 43 1 8.1887 -6.3050 7.7422 44 1 8.0568 -4.7331 6.7868 45 1 4.8620 -5.9987 2.4040 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615099480.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:33 Heat of formation + Delta-G solvation = 6.528137 kcal Electronic energy + Delta-G solvation = -28894.671444 eV Core-core repulsion = 24913.530932 eV Total energy + Delta-G solvation = -3981.140512 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.63298 -41.64990 -39.83357 -38.10053 -37.76849 -36.15893 -34.84836 -34.78629 -32.91638 -31.52176 -29.20619 -28.06365 -27.06794 -25.96640 -25.15938 -24.82674 -23.23949 -22.43564 -21.97533 -20.62905 -19.34705 -18.71112 -18.58068 -18.19496 -17.97258 -17.63455 -16.86585 -16.54796 -16.27890 -15.96057 -15.84135 -15.24454 -15.13030 -15.03236 -14.75562 -14.68357 -14.29683 -13.88674 -13.55840 -13.32441 -13.26294 -12.98076 -12.80956 -12.74439 -12.61651 -12.44590 -12.39483 -12.31838 -12.27567 -12.00051 -11.91195 -11.66930 -11.50665 -11.44260 -11.39327 -10.67155 -10.41180 -10.13162 -9.67059 -9.48173 -8.12612 -6.18342 -0.42190 -0.06821 0.47420 1.25528 1.36561 1.40109 1.46941 2.13552 2.37341 2.46605 2.52029 2.79751 2.95436 3.20197 3.22409 3.25727 3.45174 3.79112 3.91683 3.98680 4.00594 4.10438 4.22320 4.34580 4.38659 4.62038 4.69123 4.77118 4.79022 4.82177 4.90672 4.98050 4.98827 5.12357 5.15819 5.22371 5.30777 5.36099 5.45100 5.47846 5.54767 5.77933 5.84512 5.97182 6.14152 6.32089 6.69721 6.84217 6.96920 7.02609 7.46630 8.95755 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011656 B = 0.003977 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2401.568695 B = 7038.625496 C = 8874.604352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.124 3.876 3 C -0.148 4.148 4 N -0.558 5.558 5 C 0.248 3.752 6 C -0.502 4.502 7 H 0.046 0.954 8 C 0.025 3.975 9 N -0.922 5.922 10 Si 0.941 3.059 11 H -0.270 1.270 12 H -0.289 1.289 13 H -0.276 1.276 14 C 0.509 3.491 15 O -0.557 6.557 16 C 0.489 3.511 17 O -0.468 6.468 18 N -0.630 5.630 19 C 0.039 3.961 20 C 0.135 3.865 21 N -0.517 5.517 22 C 0.313 3.687 23 C -0.113 4.113 24 C -0.156 4.156 25 C -0.141 4.141 26 N -0.502 5.502 27 C 0.147 3.853 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.052 0.948 35 H 0.027 0.973 36 H 0.037 0.963 37 H 0.261 0.739 38 H 0.434 0.566 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.085 0.915 42 H 0.125 0.875 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.837 -11.460 -4.445 14.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.023 3.977 3 C -0.206 4.206 4 N -0.288 5.288 5 C 0.128 3.872 6 C -0.541 4.541 7 H 0.064 0.936 8 C -0.175 4.175 9 N -0.562 5.562 10 Si 0.767 3.233 11 H -0.196 1.196 12 H -0.215 1.215 13 H -0.201 1.201 14 C 0.291 3.709 15 O -0.439 6.439 16 C 0.271 3.729 17 O -0.337 6.337 18 N -0.281 5.281 19 C -0.061 4.061 20 C -0.033 4.033 21 N -0.231 5.231 22 C 0.047 3.953 23 C -0.132 4.132 24 C -0.194 4.194 25 C -0.180 4.180 26 N -0.215 5.215 27 C -0.023 4.023 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.073 0.927 31 H 0.117 0.883 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.070 0.930 38 H 0.275 0.725 39 H 0.176 0.824 40 H 0.164 0.836 41 H 0.103 0.897 42 H 0.143 0.857 43 H 0.150 0.850 44 H 0.099 0.901 45 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 6.910 -11.696 -3.285 13.976 hybrid contribution 0.164 1.390 -0.432 1.465 sum 7.074 -10.305 -3.717 13.041 Atomic orbital electron populations 1.22083 0.93250 1.02302 1.03342 1.21365 0.95591 0.93677 0.87109 1.22031 1.00538 0.95072 1.02913 1.48384 1.41715 1.28404 1.10338 1.19412 0.95001 0.95652 0.77116 1.21289 1.05120 1.26364 1.01286 0.93567 1.25415 0.96881 0.98040 0.97122 1.70008 1.27753 1.45487 1.12979 0.85825 0.80002 0.79892 0.77531 1.19575 1.21472 1.20139 1.19686 0.80997 0.81985 0.88270 1.90645 1.62535 1.63757 1.26943 1.20614 0.80596 0.81138 0.90576 1.91005 1.56909 1.58056 1.27745 1.42804 1.44430 1.31855 1.08983 1.19569 1.01971 0.94519 0.90016 1.23439 0.90706 1.01130 0.88001 1.68180 1.14013 1.10791 1.30090 1.22720 0.92485 0.86433 0.93703 1.20782 1.03871 0.99551 0.89030 1.23061 1.00920 1.01059 0.94357 1.23050 0.89669 1.03292 1.01946 1.68194 1.13926 1.39903 0.99497 1.23717 0.91833 0.88756 0.98016 0.93084 0.88469 0.92715 0.88282 0.93980 0.89038 0.92917 0.95467 0.94513 0.93027 0.72471 0.82395 0.83627 0.89654 0.85678 0.84972 0.90055 0.76890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.10 71.98 0.66 -3.67 16 2 C 0.12 4.11 3.25 44.99 0.15 4.25 16 3 C -0.15 -4.69 8.91 71.98 0.64 -4.05 16 4 N -0.56 -22.55 2.38 -803.82 -1.91 -24.46 16 5 C 0.25 12.01 4.11 85.63 0.35 12.36 16 6 C -0.50 -26.38 6.81 25.60 0.17 -26.20 16 7 H 0.05 2.46 7.81 -2.91 -0.02 2.44 16 8 C 0.02 1.35 5.46 84.65 0.46 1.81 16 9 N -0.92 -53.43 13.29 21.45 0.28 -53.15 16 10 Si 0.94 44.20 29.54 68.60 2.03 46.22 16 11 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 14 C 0.51 19.82 7.67 87.24 0.67 20.49 16 15 O -0.56 -20.86 15.82 -3.29 -0.05 -20.91 16 16 C 0.49 18.80 7.59 87.24 0.66 19.47 16 17 O -0.47 -21.72 9.61 -3.33 -0.03 -21.75 16 18 N -0.63 -18.53 5.35 -304.24 -1.63 -20.15 16 19 C 0.04 1.17 6.35 38.38 0.24 1.41 16 20 C 0.13 4.87 9.98 84.88 0.85 5.71 16 21 N -0.52 -17.82 9.33 -187.34 -1.75 -19.57 16 22 C 0.31 9.22 7.31 138.74 1.01 10.24 16 23 C -0.11 -2.51 6.23 -11.54 -0.07 -2.58 16 24 C -0.16 -3.23 10.01 30.59 0.31 -2.92 16 25 C -0.14 -2.60 10.23 30.59 0.31 -2.29 16 26 N -0.50 -13.65 10.32 -187.33 -1.93 -15.58 16 27 C 0.15 3.53 11.26 84.88 0.96 4.49 16 28 H 0.05 1.65 6.51 -2.39 -0.02 1.64 16 29 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 3.11 6.91 -2.39 -0.02 3.10 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.95 7.27 -2.39 -0.02 1.93 16 35 H 0.03 1.38 6.21 -2.39 -0.01 1.36 16 36 H 0.04 2.00 5.83 -2.38 -0.01 1.99 16 37 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 38 H 0.43 10.05 8.31 -92.70 -0.77 9.28 16 39 H 0.16 6.63 6.30 -2.91 -0.02 6.61 16 40 H 0.15 2.66 8.14 -2.39 -0.02 2.64 16 41 H 0.08 2.25 7.54 -2.38 -0.02 2.23 16 42 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 43 H 0.13 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.21 3.17 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -67.56 375.43 2.65 -64.91 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.26 Total: 25.94 kcal Atomic # 6 Polarization: 31.14 SS G_CDS: 7.37 Total: 38.51 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -6.93 Total: -132.91 kcal Atomic # 8 Polarization: -42.58 SS G_CDS: -0.08 Total: -42.67 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -67.56 2.65 -64.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615099480.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.438 kcal (2) G-P(sol) polarization free energy of solvation -67.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds