Wall clock time and date at job start Tue Mar 31 2020 16:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 N 1.46502 * 109.47088 * 120.00150 * 2 1 3 5 5 C 1.46499 * 119.99618 * 121.29526 * 4 2 1 6 6 C 1.53001 * 109.47263 * 269.99593 * 5 4 2 7 7 S 1.81400 * 109.47330 * 180.02562 * 6 5 4 8 8 C 1.81397 * 101.91988 * 179.97438 * 7 6 5 9 9 O 1.42100 * 108.57698 * 294.48769 * 7 6 5 10 10 O 1.42102 * 108.57643 * 65.51453 * 7 6 5 11 11 C 1.34768 * 119.99927 * 301.29076 * 4 2 1 12 12 O 1.21594 * 119.99976 * 175.70613 * 11 4 2 13 13 N 1.34773 * 120.00600 * 355.98606 * 11 4 2 14 14 C 1.46501 * 120.00485 * 185.30377 * 13 11 4 15 15 C 1.53004 * 109.47257 * 184.83145 * 14 13 11 16 16 C 1.50692 * 115.54928 * 305.69033 * 15 14 13 17 17 H 1.08007 * 120.00093 * 144.14475 * 16 15 14 18 18 C 1.37883 * 120.00150 * 324.14134 * 16 15 14 19 19 N 1.31512 * 119.99509 * 3.34015 * 18 16 15 20 20 Si 1.86802 * 119.99960 * 183.33800 * 18 16 15 21 21 H 1.48505 * 109.46785 * 94.99599 * 20 18 16 22 22 H 1.48499 * 109.46866 * 214.99240 * 20 18 16 23 23 H 1.48494 * 109.47469 * 334.99846 * 20 18 16 24 24 C 1.52995 * 117.49910 * 160.01450 * 15 14 13 25 25 C 1.53002 * 117.49757 * 91.35791 * 15 14 13 26 26 H 1.09003 * 109.47157 * 292.43886 * 1 2 3 27 27 H 1.09000 * 109.47499 * 52.43952 * 1 2 3 28 28 H 1.09004 * 109.47303 * 172.44523 * 1 2 3 29 29 H 1.09000 * 109.46918 * 240.00190 * 2 1 3 30 30 H 1.08997 * 109.47003 * 187.34166 * 3 2 1 31 31 H 1.08996 * 109.47301 * 307.34696 * 3 2 1 32 32 H 1.09004 * 109.47147 * 67.34348 * 3 2 1 33 33 H 1.08992 * 109.47439 * 29.99877 * 5 4 2 34 34 H 1.09006 * 109.46771 * 150.00126 * 5 4 2 35 35 H 1.09000 * 109.46856 * 300.00731 * 6 5 4 36 36 H 1.09004 * 109.46679 * 60.00005 * 6 5 4 37 37 H 1.08999 * 109.47386 * 60.00064 * 8 7 6 38 38 H 1.09001 * 109.47191 * 179.97438 * 8 7 6 39 39 H 1.08993 * 109.47897 * 300.00117 * 8 7 6 40 40 H 0.96998 * 119.99954 * 5.29923 * 13 11 4 41 41 H 1.09002 * 109.46766 * 304.83317 * 14 13 11 42 42 H 1.08997 * 109.46955 * 64.83258 * 14 13 11 43 43 H 0.97003 * 119.99700 * 185.00801 * 19 18 16 44 44 H 1.09002 * 117.49913 * 0.02562 * 24 15 14 45 45 H 1.08997 * 117.49813 * 145.02195 * 24 15 14 46 46 H 1.08999 * 117.50066 * 214.98076 * 25 15 14 47 47 H 1.09002 * 117.50013 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8839 -1.8650 1.0618 6 6 2.0231 -3.1282 0.9963 7 16 3.0948 -4.5823 0.8307 8 6 1.8863 -5.9339 0.7739 9 8 3.7587 -4.5149 -0.4239 10 8 3.8654 -4.7143 2.0173 11 6 1.6715 -0.2456 2.4200 12 8 2.0117 -0.8634 3.4106 13 7 0.9427 0.8811 2.5459 14 6 0.6641 1.4286 3.8759 15 6 -0.2742 2.6302 3.7465 16 6 0.1872 3.7173 2.8105 17 1 -0.5329 4.2583 2.2144 18 6 1.5287 4.0214 2.7151 19 7 2.4117 3.3194 3.3910 20 14 2.0918 5.4305 1.6256 21 1 2.2336 6.6621 2.4432 22 1 3.4008 5.0897 1.0127 23 1 1.0886 5.6600 0.5551 24 6 -1.0544 3.0546 4.9923 25 6 -1.7785 2.3645 3.8337 26 1 -0.3633 0.3923 0.9499 27 1 -0.3634 0.6264 -0.8146 28 1 -0.3634 -1.0188 -0.1351 29 1 1.8933 -0.5138 -0.8900 30 1 3.1220 1.4454 -0.1313 31 1 1.5733 1.9929 -0.8169 32 1 1.7878 1.9171 0.9484 33 1 3.4734 -1.7793 0.1491 34 1 3.5515 -1.9245 1.9214 35 1 1.4335 -3.2138 1.9090 36 1 1.3554 -3.0686 0.1367 37 1 1.2226 -5.7924 -0.0791 38 1 2.4092 -6.8849 0.6730 39 1 1.3007 -5.9367 1.6932 40 1 0.6026 1.3295 1.7559 41 1 0.1919 0.6635 4.4921 42 1 1.5975 1.7450 4.3413 43 1 3.3466 3.5778 3.3817 44 1 -0.8989 2.4781 5.9042 45 1 -1.2342 4.1202 5.1347 46 1 -2.4344 2.9762 3.2143 47 1 -2.0996 1.3336 3.9827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797565309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:18 Heat of formation + Delta-G solvation = -50.844822 kcal Electronic energy + Delta-G solvation = -28581.147219 eV Core-core repulsion = 24700.670029 eV Total energy + Delta-G solvation = -3880.477190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.99386 -37.09133 -36.96063 -36.15228 -35.96833 -34.10596 -32.33922 -31.91419 -30.09295 -29.52623 -26.94985 -26.11240 -25.40788 -23.25098 -21.91965 -21.25945 -19.47295 -19.01524 -18.97822 -17.31261 -16.61429 -16.44100 -16.18796 -16.07678 -15.69945 -14.93348 -14.60324 -14.31923 -14.04124 -13.88484 -13.69647 -13.52127 -13.44798 -13.34892 -13.05032 -12.76511 -12.57820 -12.20113 -12.10633 -11.99144 -11.79287 -11.78200 -11.42200 -11.27561 -11.16401 -11.11311 -11.05884 -10.77066 -10.73439 -10.56072 -10.43718 -10.26654 -9.73936 -9.32552 -8.98110 -8.87266 -8.44454 -8.32028 -7.65727 -6.03929 -4.24681 -0.19284 2.57550 3.15437 3.17775 3.27181 3.27533 3.50982 3.85154 3.95679 4.24362 4.49706 4.52721 4.61661 4.63570 4.83718 4.95072 5.04632 5.24934 5.28077 5.36232 5.40374 5.44265 5.59722 5.82188 5.86719 5.91874 6.00348 6.05442 6.12570 6.29051 6.35244 6.53038 6.59879 6.71397 6.75057 6.83305 6.91434 7.08376 7.23675 7.51368 7.61290 7.74880 7.96443 8.28295 8.71737 8.91093 9.38517 9.44331 10.84372 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.003583 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.219598 B = 7812.439390 C = 8390.889795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.197 4.197 4 N -0.626 5.626 5 C 0.152 3.848 6 C -0.628 4.628 7 S 2.424 3.576 8 C -0.656 4.656 9 O -0.943 6.943 10 O -0.934 6.934 11 C 0.702 3.298 12 O -0.604 6.604 13 N -0.702 5.702 14 C 0.176 3.824 15 C 0.037 3.963 16 C -0.498 4.498 17 H 0.061 0.939 18 C 0.077 3.923 19 N -0.863 5.863 20 Si 0.885 3.115 21 H -0.280 1.280 22 H -0.284 1.284 23 H -0.272 1.272 24 C -0.197 4.197 25 C -0.213 4.213 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.130 0.870 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.129 0.871 40 H 0.404 0.596 41 H 0.020 0.980 42 H 0.111 0.889 43 H 0.263 0.737 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.074 0.926 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.069 -12.662 -9.087 15.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.031 3.969 3 C -0.255 4.255 4 N -0.364 5.364 5 C 0.026 3.974 6 C -0.759 4.759 7 S 2.605 3.395 8 C -0.806 4.806 9 O -0.940 6.940 10 O -0.931 6.931 11 C 0.403 3.597 12 O -0.484 6.484 13 N -0.360 5.360 14 C 0.052 3.948 15 C 0.036 3.964 16 C -0.536 4.536 17 H 0.079 0.921 18 C -0.128 4.128 19 N -0.499 5.499 20 Si 0.712 3.288 21 H -0.206 1.206 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.236 4.236 25 C -0.250 4.250 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.116 0.884 35 H 0.157 0.843 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.147 0.853 40 H 0.246 0.754 41 H 0.038 0.962 42 H 0.128 0.872 43 H 0.074 0.926 44 H 0.086 0.914 45 H 0.098 0.902 46 H 0.093 0.907 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.688 -13.149 -8.407 15.698 hybrid contribution -0.960 1.046 -0.868 1.664 sum -2.648 -12.103 -9.275 15.476 Atomic orbital electron populations 1.22504 0.95301 1.02202 1.04081 1.21085 0.94122 0.93901 0.87762 1.22670 1.01643 0.95577 1.05631 1.47196 1.53791 1.30431 1.05018 1.20778 0.91049 0.81704 1.03906 1.30855 1.16007 1.16896 1.12114 1.07741 0.77849 0.78593 0.75308 1.30272 1.18847 1.19922 1.11523 1.93590 1.70936 1.85998 1.43521 1.93627 1.65898 1.85269 1.48294 1.15963 0.79479 0.81799 0.82421 1.90839 1.61501 1.59817 1.36291 1.45719 1.54206 1.24630 1.11416 1.20999 1.01056 0.90860 0.81879 1.19238 0.86699 0.95044 0.95445 1.20529 0.91981 1.17772 1.23278 0.92117 1.24973 0.96537 0.95770 0.95520 1.69900 1.02505 1.36650 1.40845 0.86692 0.78401 0.82840 0.80899 1.20568 1.20938 1.19680 1.22928 1.08725 0.99140 0.92770 1.22949 0.99005 0.98967 1.04093 0.90384 0.91116 0.92536 0.89587 0.92430 0.91674 0.87856 0.89576 0.88366 0.84251 0.85181 0.85492 0.85430 0.85271 0.75360 0.96196 0.87190 0.92634 0.91442 0.90219 0.90699 0.91427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.33 8.99 37.16 0.33 -2.00 16 2 C 0.14 1.86 3.27 -67.93 -0.22 1.64 16 3 C -0.20 -3.12 9.02 37.16 0.34 -2.78 16 4 N -0.63 -10.22 2.42 -171.80 -0.42 -10.64 16 5 C 0.15 2.11 5.35 -4.04 -0.02 2.09 16 6 C -0.63 -6.29 6.13 37.16 0.23 -6.06 16 7 S 2.42 22.74 5.36 -107.50 -0.58 22.16 16 8 C -0.66 -3.60 10.62 101.05 1.07 -2.53 16 9 O -0.94 -11.50 18.10 -57.83 -1.05 -12.55 16 10 O -0.93 -13.05 18.10 -57.83 -1.05 -14.09 16 11 C 0.70 14.64 7.62 -86.93 -0.66 13.98 16 12 O -0.60 -14.57 15.95 5.28 0.08 -14.48 16 13 N -0.70 -14.86 3.35 -65.22 -0.22 -15.08 16 14 C 0.18 4.12 4.63 -4.04 -0.02 4.10 16 15 C 0.04 0.84 2.06 -155.66 -0.32 0.51 16 16 C -0.50 -12.12 8.29 -34.44 -0.29 -12.41 16 17 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 18 C 0.08 1.87 4.70 -17.82 -0.08 1.79 16 19 N -0.86 -22.07 10.20 55.43 0.57 -21.50 16 20 Si 0.88 19.30 29.54 -169.99 -5.02 14.28 16 21 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 24 C -0.20 -4.21 9.96 -26.70 -0.27 -4.48 16 25 C -0.21 -4.32 9.92 -26.70 -0.26 -4.59 16 26 H 0.08 1.21 5.14 -51.93 -0.27 0.94 16 27 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.09 0.94 7.80 -51.93 -0.41 0.53 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.89 8.10 -51.93 -0.42 0.47 16 32 H 0.10 2.03 4.42 -51.93 -0.23 1.80 16 33 H 0.09 0.98 7.93 -51.93 -0.41 0.56 16 34 H 0.10 1.56 7.48 -51.93 -0.39 1.17 16 35 H 0.14 1.47 8.14 -51.92 -0.42 1.05 16 36 H 0.13 0.91 8.14 -51.92 -0.42 0.49 16 37 H 0.13 0.44 8.14 -51.92 -0.42 0.02 16 38 H 0.13 0.61 8.14 -51.92 -0.42 0.18 16 39 H 0.13 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.40 8.09 2.71 -40.82 -0.11 7.98 16 41 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 42 H 0.11 2.94 5.92 -51.93 -0.31 2.63 16 43 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 44 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 46 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 386.27 15.07 5.82 5.82 Total: -1.00 -33.70 386.27 -9.61 -43.31 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -7.58 Total: 13.50 kcal Atomic # 6 Polarization: -10.56 SS G_CDS: -0.18 Total: -10.73 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -0.07 Total: -47.22 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -2.01 Total: -41.12 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 22.74 SS G_CDS: -0.58 Total: 22.16 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.70 -9.61 -43.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.537 kcal (2) G-P(sol) polarization free energy of solvation -33.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds