Wall clock time and date at job start Tue Mar 31 2020 16:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46867 * 2 1 4 4 N 1.46502 * 109.47088 * 120.00150 * 2 1 3 5 5 C 1.46499 * 119.99618 * 121.29526 * 4 2 1 6 6 C 1.53001 * 109.47263 * 269.99593 * 5 4 2 7 7 S 1.81400 * 109.47330 * 180.02562 * 6 5 4 8 8 C 1.81397 * 101.91988 * 179.97438 * 7 6 5 9 9 O 1.42100 * 108.57698 * 294.48769 * 7 6 5 10 10 O 1.42102 * 108.57643 * 65.51453 * 7 6 5 11 11 C 1.34768 * 119.99927 * 301.29076 * 4 2 1 12 12 O 1.21594 * 119.99976 * 175.70613 * 11 4 2 13 13 N 1.34773 * 120.00600 * 355.98606 * 11 4 2 14 14 C 1.46501 * 120.00485 * 185.30377 * 13 11 4 15 15 C 1.53004 * 109.47257 * 184.83145 * 14 13 11 16 16 C 1.50692 * 115.54928 * 305.69033 * 15 14 13 17 17 H 1.08007 * 120.00093 * 144.14475 * 16 15 14 18 18 C 1.37883 * 120.00150 * 324.14134 * 16 15 14 19 19 N 1.31512 * 119.99509 * 3.34015 * 18 16 15 20 20 Si 1.86802 * 119.99960 * 183.33800 * 18 16 15 21 21 H 1.48505 * 109.46785 * 94.99599 * 20 18 16 22 22 H 1.48499 * 109.46866 * 214.99240 * 20 18 16 23 23 H 1.48494 * 109.47469 * 334.99846 * 20 18 16 24 24 C 1.52995 * 117.49910 * 160.01450 * 15 14 13 25 25 C 1.53002 * 117.49757 * 91.35791 * 15 14 13 26 26 H 1.09003 * 109.47157 * 292.43886 * 1 2 3 27 27 H 1.09000 * 109.47499 * 52.43952 * 1 2 3 28 28 H 1.09004 * 109.47303 * 172.44523 * 1 2 3 29 29 H 1.09000 * 109.46918 * 240.00190 * 2 1 3 30 30 H 1.08997 * 109.47003 * 187.34166 * 3 2 1 31 31 H 1.08996 * 109.47301 * 307.34696 * 3 2 1 32 32 H 1.09004 * 109.47147 * 67.34348 * 3 2 1 33 33 H 1.08992 * 109.47439 * 29.99877 * 5 4 2 34 34 H 1.09006 * 109.46771 * 150.00126 * 5 4 2 35 35 H 1.09000 * 109.46856 * 300.00731 * 6 5 4 36 36 H 1.09004 * 109.46679 * 60.00005 * 6 5 4 37 37 H 1.08999 * 109.47386 * 60.00064 * 8 7 6 38 38 H 1.09001 * 109.47191 * 179.97438 * 8 7 6 39 39 H 1.08993 * 109.47897 * 300.00117 * 8 7 6 40 40 H 0.96998 * 119.99954 * 5.29923 * 13 11 4 41 41 H 1.09002 * 109.46766 * 304.83317 * 14 13 11 42 42 H 1.08997 * 109.46955 * 64.83258 * 14 13 11 43 43 H 0.97003 * 119.99700 * 185.00801 * 19 18 16 44 44 H 1.09002 * 117.49913 * 0.02562 * 24 15 14 45 45 H 1.08997 * 117.49813 * 145.02195 * 24 15 14 46 46 H 1.08999 * 117.50066 * 214.98076 * 25 15 14 47 47 H 1.09002 * 117.50013 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.8839 -1.8650 1.0618 6 6 2.0231 -3.1282 0.9963 7 16 3.0948 -4.5823 0.8307 8 6 1.8863 -5.9339 0.7739 9 8 3.7587 -4.5149 -0.4239 10 8 3.8654 -4.7143 2.0173 11 6 1.6715 -0.2456 2.4200 12 8 2.0117 -0.8634 3.4106 13 7 0.9427 0.8811 2.5459 14 6 0.6641 1.4286 3.8759 15 6 -0.2742 2.6302 3.7465 16 6 0.1872 3.7173 2.8105 17 1 -0.5329 4.2583 2.2144 18 6 1.5287 4.0214 2.7151 19 7 2.4117 3.3194 3.3910 20 14 2.0918 5.4305 1.6256 21 1 2.2336 6.6621 2.4432 22 1 3.4008 5.0897 1.0127 23 1 1.0886 5.6600 0.5551 24 6 -1.0544 3.0546 4.9923 25 6 -1.7785 2.3645 3.8337 26 1 -0.3633 0.3923 0.9499 27 1 -0.3634 0.6264 -0.8146 28 1 -0.3634 -1.0188 -0.1351 29 1 1.8933 -0.5138 -0.8900 30 1 3.1220 1.4454 -0.1313 31 1 1.5733 1.9929 -0.8169 32 1 1.7878 1.9171 0.9484 33 1 3.4734 -1.7793 0.1491 34 1 3.5515 -1.9245 1.9214 35 1 1.4335 -3.2138 1.9090 36 1 1.3554 -3.0686 0.1367 37 1 1.2226 -5.7924 -0.0791 38 1 2.4092 -6.8849 0.6730 39 1 1.3007 -5.9367 1.6932 40 1 0.6026 1.3295 1.7559 41 1 0.1919 0.6635 4.4921 42 1 1.5975 1.7450 4.3413 43 1 3.3466 3.5778 3.3817 44 1 -0.8989 2.4781 5.9042 45 1 -1.2342 4.1202 5.1347 46 1 -2.4344 2.9762 3.2143 47 1 -2.0996 1.3336 3.9827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797565309.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:16 Heat of formation + Delta-G solvation = -74.044649 kcal Electronic energy + Delta-G solvation = -28582.153239 eV Core-core repulsion = 24700.670029 eV Total energy + Delta-G solvation = -3881.483210 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.46318 -38.64891 -37.96883 -37.47150 -37.02246 -35.44716 -34.15519 -33.36005 -31.03324 -30.24721 -28.08171 -27.83426 -27.19560 -24.39570 -23.20073 -22.93901 -21.19264 -20.61538 -19.77928 -18.59580 -17.88552 -17.78004 -17.16892 -17.00541 -16.87837 -16.70699 -16.09985 -15.70999 -15.60511 -15.06374 -14.94995 -14.77504 -14.49421 -14.32050 -13.99757 -13.89326 -13.63609 -13.52016 -13.29423 -13.12332 -13.10410 -13.00832 -12.91508 -12.84811 -12.56284 -12.28020 -12.23535 -12.18004 -12.02555 -11.98113 -11.67691 -11.58366 -11.50289 -11.04690 -10.77230 -10.65869 -10.14394 -9.88063 -9.26493 -7.91376 -6.17505 -0.91876 1.41105 1.47238 1.53762 1.83365 1.91507 2.34382 2.42673 2.78793 3.00799 3.15728 3.28460 3.66407 3.68716 3.83552 3.92266 4.14078 4.17820 4.24770 4.29735 4.34203 4.36556 4.53298 4.57004 4.75821 4.78532 4.82953 4.84901 4.88047 4.96002 4.97163 4.98573 5.00857 5.14176 5.29752 5.33746 5.43173 5.54606 5.63230 5.70762 5.99038 6.01857 6.16234 6.40831 6.84273 7.32396 7.47687 7.84304 8.94287 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.003583 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.219598 B = 7812.439390 C = 8390.889795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.132 3.868 3 C -0.199 4.199 4 N -0.619 5.619 5 C 0.135 3.865 6 C -0.623 4.623 7 S 2.433 3.567 8 C -0.631 4.631 9 O -0.974 6.974 10 O -0.992 6.992 11 C 0.695 3.305 12 O -0.648 6.648 13 N -0.697 5.697 14 C 0.188 3.812 15 C 0.011 3.989 16 C -0.503 4.503 17 H 0.059 0.941 18 C 0.045 3.955 19 N -0.886 5.886 20 Si 0.935 3.065 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.260 1.260 24 C -0.200 4.200 25 C -0.186 4.186 26 H 0.047 0.953 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.127 0.873 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.064 0.936 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.133 0.867 36 H 0.170 0.830 37 H 0.160 0.840 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.410 0.590 41 H 0.010 0.990 42 H 0.072 0.928 43 H 0.255 0.745 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 -13.892 -11.897 19.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.029 3.971 3 C -0.258 4.258 4 N -0.356 5.356 5 C 0.010 3.990 6 C -0.753 4.753 7 S 2.619 3.381 8 C -0.784 4.784 9 O -0.971 6.971 10 O -0.989 6.989 11 C 0.396 3.604 12 O -0.532 6.532 13 N -0.355 5.355 14 C 0.063 3.937 15 C 0.010 3.990 16 C -0.540 4.540 17 H 0.078 0.922 18 C -0.157 4.157 19 N -0.523 5.523 20 Si 0.761 3.239 21 H -0.213 1.213 22 H -0.214 1.214 23 H -0.184 1.184 24 C -0.238 4.238 25 C -0.223 4.223 26 H 0.065 0.935 27 H 0.111 0.889 28 H 0.098 0.902 29 H 0.145 0.855 30 H 0.069 0.931 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.131 0.869 34 H 0.083 0.917 35 H 0.151 0.849 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.160 0.840 39 H 0.164 0.836 40 H 0.254 0.746 41 H 0.028 0.972 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.104 0.896 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.816 -14.339 -11.270 18.633 hybrid contribution -0.332 1.377 -0.015 1.417 sum -4.148 -12.962 -11.285 17.680 Atomic orbital electron populations 1.22478 0.94087 1.04001 1.03151 1.21378 0.95109 0.92758 0.87832 1.22667 1.01587 0.97199 1.04318 1.47233 1.53173 1.31000 1.04236 1.21020 0.91478 0.82750 1.03757 1.30765 1.15847 1.15118 1.13578 1.07192 0.78283 0.79229 0.73403 1.30041 1.17419 1.16964 1.13996 1.93544 1.72758 1.86741 1.44091 1.93559 1.68787 1.86225 1.50309 1.16220 0.79205 0.81501 0.83443 1.90796 1.63033 1.61012 1.38340 1.45593 1.54501 1.24726 1.10693 1.20625 0.99294 0.90861 0.82927 1.19258 0.88313 0.94864 0.96567 1.20679 0.92030 1.17932 1.23348 0.92235 1.25467 0.96593 0.97300 0.96336 1.70086 1.02185 1.37724 1.42293 0.85899 0.77962 0.80234 0.79780 1.21254 1.21396 1.18358 1.22954 1.08517 0.99403 0.92955 1.22930 0.97013 0.99711 1.02685 0.93462 0.88947 0.90169 0.85471 0.93085 0.89390 0.91691 0.86931 0.91728 0.84910 0.81260 0.82211 0.83992 0.83617 0.74554 0.97172 0.90966 0.93472 0.90905 0.90282 0.89572 0.90121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.99 71.98 0.65 -3.36 16 2 C 0.13 3.31 3.27 44.99 0.15 3.45 16 3 C -0.20 -6.06 9.02 71.98 0.65 -5.41 16 4 N -0.62 -19.88 2.42 -815.71 -1.98 -21.86 16 5 C 0.13 3.70 5.35 86.38 0.46 4.16 16 6 C -0.62 -11.34 6.13 71.98 0.44 -10.90 16 7 S 2.43 42.52 5.36 -56.49 -0.30 42.22 16 8 C -0.63 -4.34 10.62 113.37 1.20 -3.13 16 9 O -0.97 -22.37 18.10 -127.37 -2.31 -24.67 16 10 O -0.99 -28.55 18.10 -127.37 -2.30 -30.85 16 11 C 0.69 29.80 7.62 179.06 1.36 31.16 16 12 O -0.65 -32.87 15.95 -4.01 -0.06 -32.93 16 13 N -0.70 -30.22 3.35 -478.53 -1.60 -31.82 16 14 C 0.19 9.14 4.63 86.38 0.40 9.54 16 15 C 0.01 0.49 2.06 -52.93 -0.11 0.38 16 16 C -0.50 -24.47 8.29 25.60 0.21 -24.26 16 17 H 0.06 2.86 7.82 -2.91 -0.02 2.84 16 18 C 0.05 2.23 4.70 84.66 0.40 2.62 16 19 N -0.89 -46.98 10.20 21.45 0.22 -46.76 16 20 Si 0.93 39.77 29.54 68.60 2.03 41.79 16 21 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 C -0.20 -8.47 9.96 30.61 0.30 -8.17 16 25 C -0.19 -7.31 9.92 30.62 0.30 -7.01 16 26 H 0.05 1.38 5.14 -2.39 -0.01 1.37 16 27 H 0.09 1.67 8.10 -2.39 -0.02 1.65 16 28 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.13 2.20 7.80 -2.39 -0.02 2.18 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.09 2.21 8.10 -2.39 -0.02 2.19 16 32 H 0.06 2.55 4.42 -2.38 -0.01 2.54 16 33 H 0.11 2.41 7.93 -2.39 -0.02 2.39 16 34 H 0.06 2.19 7.48 -2.38 -0.02 2.17 16 35 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 36 H 0.17 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.15 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.41 16.56 2.71 -92.71 -0.25 16.31 16 41 H 0.01 0.50 8.05 -2.39 -0.02 0.48 16 42 H 0.07 4.09 5.92 -2.39 -0.01 4.07 16 43 H 0.26 13.45 8.32 -92.71 -0.77 12.68 16 44 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 45 H 0.08 3.33 8.14 -2.39 -0.02 3.31 16 46 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -77.68 386.27 0.83 -76.85 By element: Atomic # 1 Polarization: 38.25 SS G_CDS: 0.71 Total: 38.96 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 6.43 Total: -10.92 kcal Atomic # 7 Polarization: -97.08 SS G_CDS: -3.36 Total: -100.44 kcal Atomic # 8 Polarization: -83.79 SS G_CDS: -4.67 Total: -88.46 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.79 kcal Atomic # 16 Polarization: 42.52 SS G_CDS: -0.30 Total: 42.22 kcal Total: -77.68 0.83 -76.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797565309.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.810 kcal (2) G-P(sol) polarization free energy of solvation -77.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds