Wall clock time and date at job start Tue Mar 31 2020 16:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47220 * 2 1 4 4 N 1.46504 * 109.46997 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00058 * 269.55168 * 4 3 2 6 6 H 1.08009 * 120.00157 * 322.08670 * 5 4 3 7 7 C 1.38808 * 120.00207 * 142.08861 * 5 4 3 8 8 N 1.31617 * 120.00302 * 156.97395 * 7 5 4 9 9 Si 1.86800 * 119.99675 * 336.97242 * 7 5 4 10 10 H 1.48504 * 109.46956 * 95.70249 * 9 7 5 11 11 H 1.48504 * 109.47052 * 215.69844 * 9 7 5 12 12 H 1.48499 * 109.47208 * 335.70141 * 9 7 5 13 13 C 1.46493 * 120.00054 * 89.55759 * 4 3 2 14 14 C 1.52998 * 109.47408 * 89.99648 * 13 4 3 15 15 N 1.46503 * 109.47204 * 180.02562 * 14 13 4 16 16 C 1.34773 * 120.00086 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99964 * 359.97438 * 16 15 14 18 18 C 1.50697 * 119.99944 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47062 * 179.97438 * 18 16 15 20 20 H 1.09003 * 110.01251 * 53.62215 * 19 18 16 21 21 C 1.53882 * 110.02962 * 292.18958 * 19 18 16 22 22 C 1.54164 * 108.70605 * 193.52941 * 21 19 18 23 23 S 1.82917 * 105.08600 * 27.90802 * 22 21 19 24 24 O 1.42104 * 109.35292 * 244.47929 * 23 22 21 25 25 O 1.42099 * 109.47431 * 111.31089 * 23 22 21 26 26 C 1.55056 * 110.02946 * 174.99758 * 19 18 16 27 27 H 1.09000 * 109.46928 * 60.00574 * 1 2 3 28 28 H 1.08999 * 109.47046 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47668 * 299.99987 * 1 2 3 30 30 H 1.09001 * 109.46890 * 119.99979 * 2 1 3 31 31 H 1.09005 * 109.47512 * 239.99676 * 2 1 3 32 32 H 1.09001 * 109.47172 * 299.99807 * 3 2 1 33 33 H 1.09000 * 109.47427 * 59.99846 * 3 2 1 34 34 H 0.96996 * 120.00176 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.47222 * 209.99954 * 13 4 3 36 36 H 1.09007 * 109.46900 * 329.99501 * 13 4 3 37 37 H 1.09002 * 109.46824 * 299.99974 * 14 13 4 38 38 H 1.08995 * 109.47359 * 60.00365 * 14 13 4 39 39 H 0.97000 * 120.00053 * 359.97438 * 15 14 13 40 40 H 1.09002 * 109.47148 * 299.99481 * 18 16 15 41 41 H 1.08996 * 109.47594 * 59.99930 * 18 16 15 42 42 H 1.08997 * 109.64198 * 313.38299 * 21 19 18 43 43 H 1.09002 * 109.64320 * 73.67640 * 21 19 18 44 44 H 1.08999 * 110.31681 * 269.00724 * 22 21 19 45 45 H 1.08996 * 110.31653 * 146.81375 * 22 21 19 46 46 H 1.08998 * 110.78725 * 279.99439 * 26 19 18 47 47 H 1.08994 * 110.78528 * 43.26573 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4518 1.1868 6 1 3.8198 2.0333 2.0187 7 6 5.3575 0.7142 1.3200 8 7 6.2442 1.0453 2.2346 9 14 5.6712 -0.7484 0.2013 10 1 6.5090 -0.3216 -0.9483 11 1 6.3780 -1.8105 0.9614 12 1 4.3763 -1.2759 -0.2988 13 6 4.2380 1.4324 -1.2677 14 6 4.4932 2.8713 -1.7207 15 7 5.2258 2.8613 -2.9894 16 6 5.5633 4.0238 -3.5819 17 8 5.2602 5.0782 -3.0650 18 6 6.3173 4.0134 -4.8866 19 6 6.5724 5.4523 -5.3397 20 1 7.0620 6.0129 -4.5433 21 6 5.2437 6.1281 -5.7213 22 6 5.5531 7.4311 -6.4849 23 16 7.1706 7.1397 -7.2878 24 8 8.1332 8.0337 -6.7458 25 8 6.9932 7.0590 -8.6953 26 6 7.4556 5.4591 -6.6142 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 7.0604 0.5296 2.3280 35 1 5.1904 0.9196 -1.1329 36 1 3.6492 0.9125 -2.0235 37 1 3.5408 3.3841 -1.8555 38 1 5.0820 3.3912 -0.9650 39 1 5.4685 2.0179 -3.4026 40 1 7.2696 3.5003 -4.7519 41 1 5.7285 3.4939 -5.6425 42 1 4.6621 5.4602 -6.3567 43 1 4.6770 6.3579 -4.8189 44 1 5.6203 8.2693 -5.7914 45 1 4.7863 7.6207 -7.2360 46 1 8.5055 5.3178 -6.3580 47 1 7.1246 4.6957 -7.3182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266564975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:26 Heat of formation + Delta-G solvation = -99.158662 kcal Electronic energy + Delta-G solvation = -26695.804774 eV Core-core repulsion = 22813.232539 eV Total energy + Delta-G solvation = -3882.572236 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 2.63 seconds Orbital eigenvalues (eV) -39.86905 -37.37751 -37.22180 -36.61721 -36.26065 -34.48708 -32.92516 -31.64705 -31.20156 -29.28553 -27.78158 -25.88408 -24.67373 -23.16795 -21.97260 -21.24877 -20.28846 -19.86201 -19.15245 -17.64042 -17.04695 -16.75792 -16.38364 -16.00601 -15.77554 -15.62565 -15.17570 -14.78488 -14.54013 -14.40991 -14.10635 -13.89734 -13.47276 -13.44821 -12.88907 -12.71200 -12.56243 -12.47300 -12.45185 -12.37222 -12.32318 -12.14069 -11.87591 -11.65850 -11.29865 -11.23960 -11.18952 -10.95154 -10.85989 -10.76899 -10.66353 -10.53269 -10.06721 -9.96404 -9.71623 -9.60370 -8.79346 -8.59733 -6.98393 -6.09910 -3.52381 -0.27079 2.19423 2.72244 3.15218 3.19659 3.34509 3.37077 3.40864 3.67623 3.96570 4.24254 4.27357 4.40855 4.46041 4.56075 4.77406 4.89407 4.97702 5.05626 5.14452 5.19481 5.30026 5.38423 5.41935 5.53455 5.59017 5.68130 5.74228 5.77981 5.84948 5.90115 6.05293 6.06494 6.31296 6.39392 6.44949 6.52316 6.61442 6.75720 6.82564 6.98728 7.65394 7.94375 8.29600 8.34625 8.86773 9.59554 9.98960 11.05469 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.018173 B = 0.002382 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.371391 B =11752.109264 C =12516.683989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.150 3.850 4 N -0.600 5.600 5 C -0.271 4.271 6 H 0.080 0.920 7 C 0.038 3.962 8 N -0.894 5.894 9 Si 0.875 3.125 10 H -0.288 1.288 11 H -0.301 1.301 12 H -0.266 1.266 13 C 0.129 3.871 14 C 0.099 3.901 15 N -0.725 5.725 16 C 0.506 3.494 17 O -0.541 6.541 18 C -0.130 4.130 19 C -0.073 4.073 20 H 0.106 0.894 21 C -0.115 4.115 22 C -0.587 4.587 23 S 2.386 3.614 24 O -0.938 6.938 25 O -0.944 6.944 26 C -0.588 4.588 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.264 0.736 35 H 0.058 0.942 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.396 0.604 40 H 0.102 0.898 41 H 0.098 0.902 42 H 0.081 0.919 43 H 0.111 0.889 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 4.828 -18.915 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.024 3.976 4 N -0.321 5.321 5 C -0.400 4.400 6 H 0.098 0.902 7 C -0.163 4.163 8 N -0.535 5.535 9 Si 0.705 3.295 10 H -0.216 1.216 11 H -0.229 1.229 12 H -0.191 1.191 13 C 0.002 3.998 14 C -0.026 4.026 15 N -0.375 5.375 16 C 0.291 3.709 17 O -0.419 6.419 18 C -0.171 4.171 19 C -0.093 4.093 20 H 0.125 0.875 21 C -0.154 4.154 22 C -0.717 4.717 23 S 2.570 3.430 24 O -0.935 6.935 25 O -0.941 6.941 26 C -0.717 4.717 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.229 0.771 40 H 0.120 0.880 41 H 0.117 0.883 42 H 0.099 0.901 43 H 0.129 0.871 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.158 0.842 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.103 6.142 -19.014 20.092 hybrid contribution 0.040 -1.944 -0.192 1.953 sum -2.062 4.198 -19.206 19.768 Atomic orbital electron populations 1.21729 0.97120 1.00576 1.01072 1.22133 0.93899 1.00696 1.01839 1.20986 0.83726 0.93596 0.99250 1.44015 1.00582 1.86052 1.01474 1.18784 1.06018 1.24237 0.90953 0.90199 1.25498 0.96794 0.97626 0.96432 1.69882 1.08359 1.39146 1.36081 0.86973 0.77994 0.84642 0.79918 1.21595 1.22867 1.19063 1.21316 0.96934 0.92886 0.88667 1.22280 0.95777 1.01200 0.83361 1.46147 1.58120 1.08127 1.25153 1.20515 0.79817 0.84185 0.86350 1.90688 1.54936 1.30652 1.65651 1.21655 1.02300 0.97131 0.96010 1.21609 0.94611 0.97547 0.95508 0.87536 1.22098 0.98036 0.92616 1.02630 1.30459 1.21531 1.06982 1.12729 1.09111 0.78819 0.78913 0.76128 1.93630 1.58043 1.61253 1.80606 1.93606 1.86230 1.86537 1.27744 1.30758 1.09247 1.23069 1.08658 0.93496 0.93714 0.92992 0.91700 0.93358 0.94385 0.92791 0.92616 0.92462 0.93869 0.92225 0.90542 0.77062 0.88008 0.88337 0.90075 0.87059 0.84398 0.84515 0.84228 0.84260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 37.16 0.37 -1.61 16 2 C -0.15 -2.49 6.26 -26.73 -0.17 -2.66 16 3 C 0.15 2.77 5.67 -4.04 -0.02 2.75 16 4 N -0.60 -13.13 2.07 -173.24 -0.36 -13.49 16 5 C -0.27 -7.17 9.90 -15.06 -0.15 -7.31 16 6 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 7 C 0.04 1.03 5.29 -17.43 -0.09 0.94 16 8 N -0.89 -26.32 13.97 55.49 0.78 -25.54 16 9 Si 0.87 20.73 25.10 -169.99 -4.27 16.46 16 10 H -0.29 -6.47 6.68 56.52 0.38 -6.09 16 11 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 13 C 0.13 2.47 4.63 -4.05 -0.02 2.45 16 14 C 0.10 1.76 6.00 -4.04 -0.02 1.74 16 15 N -0.72 -9.90 5.56 -60.30 -0.33 -10.24 16 16 C 0.51 6.57 7.61 -10.99 -0.08 6.49 16 17 O -0.54 -9.00 14.29 5.55 0.08 -8.92 16 18 C -0.13 -1.03 5.19 -27.89 -0.14 -1.17 16 19 C -0.07 -0.56 2.21 -89.07 -0.20 -0.76 16 20 H 0.11 0.95 7.92 -51.93 -0.41 0.53 16 21 C -0.12 -0.86 5.34 -25.66 -0.14 -0.99 16 22 C -0.59 -3.66 7.26 37.77 0.27 -3.39 16 23 S 2.39 18.45 6.10 -107.50 -0.66 17.80 16 24 O -0.94 -11.02 18.15 -57.73 -1.05 -12.07 16 25 O -0.94 -10.33 18.15 -57.73 -1.05 -11.38 16 26 C -0.59 -3.25 6.67 38.24 0.26 -3.00 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.04 0.62 8.08 -51.93 -0.42 0.20 16 33 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.06 1.21 3.38 -51.93 -0.18 1.03 16 36 H 0.04 0.72 8.07 -51.92 -0.42 0.30 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 39 H 0.40 4.30 8.47 -40.82 -0.35 3.95 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.52 8.07 -51.93 -0.42 0.10 16 42 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 43 H 0.11 1.09 6.60 -51.93 -0.34 0.75 16 44 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.14 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.14 0.49 8.10 -51.93 -0.42 0.07 16 LS Contribution 386.93 15.07 5.83 5.83 Total: -1.00 -36.53 386.93 -9.19 -45.72 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.02 Total: 2.37 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -0.14 Total: -6.53 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: 0.08 Total: -49.27 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -2.02 Total: -32.37 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.27 Total: 16.46 kcal Atomic # 16 Polarization: 18.45 SS G_CDS: -0.66 Total: 17.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.53 -9.19 -45.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266564975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.438 kcal (2) G-P(sol) polarization free energy of solvation -36.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.63 seconds