Wall clock time and date at job start Tue Mar 31 2020 16:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47226 * 2 1 4 4 N 1.46506 * 109.46887 * 119.99596 * 2 1 3 5 5 C 1.36931 * 120.00020 * 302.23882 * 4 2 1 6 6 H 1.08002 * 120.00241 * 321.91136 * 5 4 2 7 7 C 1.38809 * 120.00129 * 141.90999 * 5 4 2 8 8 N 1.31619 * 119.99990 * 338.46715 * 7 5 4 9 9 Si 1.86799 * 120.00322 * 158.46058 * 7 5 4 10 10 H 1.48504 * 109.46735 * 60.00428 * 9 7 5 11 11 H 1.48499 * 109.47108 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47084 * 300.00522 * 9 7 5 13 13 C 1.46502 * 119.99911 * 122.24199 * 4 2 1 14 14 C 1.52995 * 109.47086 * 89.99932 * 13 4 2 15 15 C 1.53001 * 109.46996 * 179.97438 * 14 13 4 16 16 N 1.46506 * 109.47301 * 179.97438 * 15 14 13 17 17 C 1.34775 * 120.00196 * 179.97438 * 16 15 14 18 18 O 1.21563 * 119.99913 * 0.02562 * 17 16 15 19 19 C 1.47799 * 119.99799 * 180.02562 * 17 16 15 20 20 C 1.41155 * 118.95410 * 0.02562 * 19 17 16 21 21 C 1.35387 * 121.76268 * 180.28116 * 20 19 17 22 22 C 1.45293 * 119.10018 * 359.46582 * 21 20 19 23 23 N 1.30883 * 138.53914 * 180.16497 * 22 21 20 24 24 O 1.21483 * 109.07448 * 180.33607 * 23 22 21 25 25 N 1.21480 * 116.30186 * 359.97438 * 24 23 22 26 26 C 1.31070 * 109.07703 * 0.02562 * 25 24 23 27 27 C 1.37772 * 118.94606 * 180.02562 * 19 17 16 28 28 H 1.08999 * 109.47579 * 305.40838 * 1 2 3 29 29 H 1.09004 * 109.46754 * 65.40962 * 1 2 3 30 30 H 1.09003 * 109.46803 * 185.40350 * 1 2 3 31 31 H 1.08997 * 109.47348 * 239.99503 * 2 1 3 32 32 H 1.08994 * 109.47163 * 180.43536 * 3 2 1 33 33 H 1.09001 * 109.46413 * 300.43319 * 3 2 1 34 34 H 1.08994 * 109.47135 * 60.43520 * 3 2 1 35 35 H 0.97001 * 120.00155 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47118 * 330.00026 * 13 4 2 37 37 H 1.08997 * 109.47246 * 209.99629 * 13 4 2 38 38 H 1.08999 * 109.47766 * 60.00102 * 14 13 4 39 39 H 1.09005 * 109.47309 * 299.99504 * 14 13 4 40 40 H 1.09004 * 109.47098 * 60.00161 * 15 14 13 41 41 H 1.08997 * 109.47357 * 299.99709 * 15 14 13 42 42 H 0.97005 * 119.99642 * 0.02562 * 16 15 14 43 43 H 1.08002 * 119.11485 * 359.97438 * 20 19 17 44 44 H 1.08005 * 120.45140 * 179.71672 * 21 20 19 45 45 H 1.08002 * 120.14681 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6501 -0.2500 2.4394 6 1 1.5673 0.8090 2.6344 7 6 1.3830 -1.1645 3.4489 8 7 1.0659 -2.4054 3.1458 9 14 1.4739 -0.6341 5.2378 10 1 0.5005 0.4611 5.4793 11 1 1.1482 -1.7884 6.1134 12 1 2.8455 -0.1536 5.5425 13 6 2.9006 -1.8524 1.0625 14 6 4.3580 -1.3871 1.0485 15 6 5.2795 -2.6006 0.9094 16 7 6.6750 -2.1550 0.8954 17 6 7.6695 -3.0575 0.7809 18 8 7.4084 -4.2412 0.6888 19 6 9.0774 -2.6079 0.7673 20 6 9.3553 -1.2283 0.8762 21 6 10.6231 -0.7536 0.8643 22 6 11.7274 -1.6906 0.7478 23 7 13.0352 -1.6645 0.7016 24 8 13.4511 -2.8002 0.5878 25 7 12.6130 -3.6785 0.5432 26 6 11.4220 -3.1390 0.6339 27 6 10.0767 -3.5489 0.6488 28 1 -0.3634 0.5954 0.8376 29 1 -0.3633 0.4277 -0.9345 30 1 -0.3633 -1.0231 0.0968 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0078 33 1 1.6703 1.9585 -0.8861 34 1 1.6831 1.9541 0.8938 35 1 0.8790 -3.0444 3.8513 36 1 2.6766 -2.3735 0.1317 37 1 2.7428 -2.5273 1.9038 38 1 4.5821 -0.8660 1.9793 39 1 4.5159 -0.7123 0.2071 40 1 5.0556 -3.1220 -0.0212 41 1 5.1215 -3.2751 1.7510 42 1 6.8833 -1.2105 0.9692 43 1 8.5343 -0.5324 0.9665 44 1 10.8113 0.3069 0.9444 45 1 9.8281 -4.5968 0.5679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267313844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:40 Heat of formation + Delta-G solvation = 118.406268 kcal Electronic energy + Delta-G solvation = -27459.852860 eV Core-core repulsion = 23483.563748 eV Total energy + Delta-G solvation = -3976.289112 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -47.07630 -40.34783 -38.22487 -36.83619 -35.32011 -35.13919 -33.78099 -32.52431 -31.58943 -31.49630 -28.99804 -26.90696 -26.22226 -25.39894 -25.06107 -23.21376 -21.73893 -21.55184 -20.92809 -19.57982 -19.34652 -19.15246 -18.37384 -17.66048 -16.46871 -15.87506 -15.61520 -15.03341 -14.95971 -14.85685 -14.61025 -14.21498 -14.11312 -13.69979 -13.53918 -13.31976 -13.03890 -12.87797 -12.48224 -12.26175 -12.23668 -11.79641 -11.71055 -11.56265 -11.49972 -11.34993 -11.02285 -10.79770 -10.70177 -10.49914 -10.36733 -10.31039 -10.13193 -9.95327 -9.64932 -9.54743 -9.16321 -8.97854 -8.49935 -6.58256 -5.81576 -3.39539 -0.57574 0.46344 1.39163 2.28242 2.52915 2.83716 3.14298 3.20300 3.25278 3.32965 3.40124 3.41025 4.11803 4.18927 4.34335 4.44365 4.52188 4.71222 5.03613 5.16211 5.29621 5.32547 5.45663 5.55976 5.56325 5.70100 5.80385 5.90566 5.93944 6.12042 6.22843 6.29665 6.32961 6.40279 6.58635 6.64783 6.68143 6.75663 6.77302 7.04959 7.16645 7.31662 7.38481 7.62101 7.81348 7.98811 8.02572 8.50733 9.17401 9.79743 10.39049 11.18672 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.002245 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.677520 B =12467.367741 C =12866.976656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.162 3.838 3 C -0.153 4.153 4 N -0.579 5.579 5 C -0.255 4.255 6 H 0.059 0.941 7 C 0.014 3.986 8 N -0.885 5.885 9 Si 0.892 3.108 10 H -0.282 1.282 11 H -0.291 1.291 12 H -0.284 1.284 13 C 0.152 3.848 14 C -0.147 4.147 15 C 0.119 3.881 16 N -0.714 5.714 17 C 0.551 3.449 18 O -0.530 6.530 19 C -0.095 4.095 20 C -0.070 4.070 21 C -0.059 4.059 22 C 0.023 3.977 23 N -0.343 5.343 24 O 0.378 5.622 25 N -0.332 5.332 26 C 0.012 3.988 27 C 0.001 3.999 28 H 0.053 0.947 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.045 0.955 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.053 0.947 35 H 0.255 0.745 36 H 0.025 0.975 37 H 0.095 0.905 38 H 0.066 0.934 39 H 0.050 0.950 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.399 0.601 43 H 0.150 0.850 44 H 0.156 0.844 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.610 3.226 -6.470 19.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.055 3.945 3 C -0.213 4.213 4 N -0.299 5.299 5 C -0.385 4.385 6 H 0.076 0.924 7 C -0.187 4.187 8 N -0.527 5.527 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.210 1.210 13 C 0.025 3.975 14 C -0.187 4.187 15 C -0.004 4.004 16 N -0.365 5.365 17 C 0.336 3.664 18 O -0.408 6.408 19 C -0.102 4.102 20 C -0.092 4.092 21 C -0.080 4.080 22 C -0.131 4.131 23 N -0.065 5.065 24 O 0.139 5.861 25 N -0.051 5.051 26 C -0.141 4.141 27 C -0.020 4.020 28 H 0.072 0.928 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.044 0.956 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.069 0.931 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.235 0.765 43 H 0.168 0.832 44 H 0.173 0.827 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 18.433 1.965 -6.496 19.643 hybrid contribution -0.668 0.923 1.138 1.610 sum 17.765 2.888 -5.358 18.779 Atomic orbital electron populations 1.22060 0.97866 1.01592 0.98952 1.20418 0.92485 0.91772 0.89803 1.22179 1.00015 0.99010 1.00055 1.43832 1.51715 1.33257 1.01075 1.18842 1.41732 0.91246 0.86646 0.92352 1.25174 0.98448 0.96429 0.98617 1.69989 1.46745 1.04203 1.31807 0.86546 0.78139 0.77632 0.85487 1.20812 1.21682 1.21002 1.20777 0.84857 0.90883 1.00999 1.22532 0.98826 0.95810 1.01575 1.21596 0.77786 0.98687 1.02314 1.46130 1.07211 1.10028 1.73129 1.18019 0.84500 0.86204 0.77654 1.90823 1.84174 1.16354 1.49434 1.19939 0.94164 0.93391 1.02754 1.21052 0.97080 0.94433 0.96631 1.20852 0.87758 0.98454 1.00910 1.24164 0.90708 0.95093 1.03181 1.75205 1.11324 1.02116 1.17807 1.85423 1.33431 1.07584 1.59691 1.75297 0.98800 1.14420 1.16622 1.22698 0.94847 0.91126 1.05391 1.20263 0.85796 1.01719 0.94254 0.92774 0.95288 0.92994 0.93714 0.93922 0.94595 0.92774 0.93514 0.95638 0.88772 0.91531 0.93118 0.91534 0.91035 0.76539 0.83208 0.82681 0.82079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.03 37.16 0.34 -2.50 16 2 C 0.16 3.16 3.36 -67.92 -0.23 2.93 16 3 C -0.15 -2.63 9.20 37.16 0.34 -2.29 16 4 N -0.58 -12.97 2.36 -165.66 -0.39 -13.36 16 5 C -0.25 -6.37 8.23 -15.06 -0.12 -6.49 16 6 H 0.06 1.48 6.95 -52.49 -0.36 1.11 16 7 C 0.01 0.36 4.94 -17.43 -0.09 0.27 16 8 N -0.89 -24.15 11.52 55.49 0.64 -23.51 16 9 Si 0.89 20.57 29.60 -169.99 -5.03 15.54 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.15 3.17 5.27 -4.04 -0.02 3.15 16 14 C -0.15 -2.41 5.65 -26.73 -0.15 -2.56 16 15 C 0.12 1.75 5.67 -4.04 -0.02 1.73 16 16 N -0.71 -8.38 5.50 -61.26 -0.34 -8.72 16 17 C 0.55 6.98 7.75 -12.35 -0.10 6.88 16 18 O -0.53 -8.72 16.21 5.31 0.09 -8.64 16 19 C -0.09 -0.93 5.86 -105.05 -0.62 -1.55 16 20 C -0.07 -0.49 9.39 -39.49 -0.37 -0.86 16 21 C -0.06 -0.42 10.27 -37.80 -0.39 -0.80 16 22 C 0.02 0.22 7.94 -81.25 -0.65 -0.42 16 23 N -0.34 -3.45 12.28 32.75 0.40 -3.04 16 24 O 0.38 3.72 11.67 26.93 0.31 4.03 16 25 N -0.33 -3.56 12.29 31.88 0.39 -3.17 16 26 C 0.01 0.13 7.75 -83.07 -0.64 -0.52 16 27 C 0.00 0.01 9.60 -38.85 -0.37 -0.36 16 28 H 0.05 1.12 7.80 -51.93 -0.40 0.72 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.82 7.78 -51.93 -0.40 0.42 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.05 1.00 7.06 -51.93 -0.37 0.63 16 35 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.03 0.51 7.90 -51.93 -0.41 0.10 16 37 H 0.09 2.28 5.56 -51.93 -0.29 1.99 16 38 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.40 3.50 6.36 -40.82 -0.26 3.24 16 43 H 0.15 0.66 6.23 -52.49 -0.33 0.34 16 44 H 0.16 0.67 8.06 -52.48 -0.42 0.25 16 45 H 0.16 1.66 7.52 -52.49 -0.39 1.26 16 LS Contribution 377.36 15.07 5.69 5.69 Total: -1.00 -29.60 377.36 -7.49 -37.09 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.16 Total: 1.48 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -3.09 Total: -3.40 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: 0.71 Total: -51.80 kcal Atomic # 8 Polarization: -5.00 SS G_CDS: 0.40 Total: -4.60 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.03 Total: 15.54 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.60 -7.49 -37.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267313844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.499 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds