Wall clock time and date at job start Tue Mar 31 2020 16:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47226 * 2 1 4 4 N 1.46506 * 109.46887 * 119.99596 * 2 1 3 5 5 C 1.36931 * 120.00020 * 302.23882 * 4 2 1 6 6 H 1.08002 * 120.00241 * 321.91136 * 5 4 2 7 7 C 1.38809 * 120.00129 * 141.90999 * 5 4 2 8 8 N 1.31619 * 119.99990 * 338.46715 * 7 5 4 9 9 Si 1.86799 * 120.00322 * 158.46058 * 7 5 4 10 10 H 1.48504 * 109.46735 * 60.00428 * 9 7 5 11 11 H 1.48499 * 109.47108 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47084 * 300.00522 * 9 7 5 13 13 C 1.46502 * 119.99911 * 122.24199 * 4 2 1 14 14 C 1.52995 * 109.47086 * 89.99932 * 13 4 2 15 15 C 1.53001 * 109.46996 * 179.97438 * 14 13 4 16 16 N 1.46506 * 109.47301 * 179.97438 * 15 14 13 17 17 C 1.34775 * 120.00196 * 179.97438 * 16 15 14 18 18 O 1.21563 * 119.99913 * 0.02562 * 17 16 15 19 19 C 1.47799 * 119.99799 * 180.02562 * 17 16 15 20 20 C 1.41155 * 118.95410 * 0.02562 * 19 17 16 21 21 C 1.35387 * 121.76268 * 180.28116 * 20 19 17 22 22 C 1.45293 * 119.10018 * 359.46582 * 21 20 19 23 23 N 1.30883 * 138.53914 * 180.16497 * 22 21 20 24 24 O 1.21483 * 109.07448 * 180.33607 * 23 22 21 25 25 N 1.21480 * 116.30186 * 359.97438 * 24 23 22 26 26 C 1.31070 * 109.07703 * 0.02562 * 25 24 23 27 27 C 1.37772 * 118.94606 * 180.02562 * 19 17 16 28 28 H 1.08999 * 109.47579 * 305.40838 * 1 2 3 29 29 H 1.09004 * 109.46754 * 65.40962 * 1 2 3 30 30 H 1.09003 * 109.46803 * 185.40350 * 1 2 3 31 31 H 1.08997 * 109.47348 * 239.99503 * 2 1 3 32 32 H 1.08994 * 109.47163 * 180.43536 * 3 2 1 33 33 H 1.09001 * 109.46413 * 300.43319 * 3 2 1 34 34 H 1.08994 * 109.47135 * 60.43520 * 3 2 1 35 35 H 0.97001 * 120.00155 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.47118 * 330.00026 * 13 4 2 37 37 H 1.08997 * 109.47246 * 209.99629 * 13 4 2 38 38 H 1.08999 * 109.47766 * 60.00102 * 14 13 4 39 39 H 1.09005 * 109.47309 * 299.99504 * 14 13 4 40 40 H 1.09004 * 109.47098 * 60.00161 * 15 14 13 41 41 H 1.08997 * 109.47357 * 299.99709 * 15 14 13 42 42 H 0.97005 * 119.99642 * 0.02562 * 16 15 14 43 43 H 1.08002 * 119.11485 * 359.97438 * 20 19 17 44 44 H 1.08005 * 120.45140 * 179.71672 * 21 20 19 45 45 H 1.08002 * 120.14681 * 359.97438 * 27 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6501 -0.2500 2.4394 6 1 1.5673 0.8090 2.6344 7 6 1.3830 -1.1645 3.4489 8 7 1.0659 -2.4054 3.1458 9 14 1.4739 -0.6341 5.2378 10 1 0.5005 0.4611 5.4793 11 1 1.1482 -1.7884 6.1134 12 1 2.8455 -0.1536 5.5425 13 6 2.9006 -1.8524 1.0625 14 6 4.3580 -1.3871 1.0485 15 6 5.2795 -2.6006 0.9094 16 7 6.6750 -2.1550 0.8954 17 6 7.6695 -3.0575 0.7809 18 8 7.4084 -4.2412 0.6888 19 6 9.0774 -2.6079 0.7673 20 6 9.3553 -1.2283 0.8762 21 6 10.6231 -0.7536 0.8643 22 6 11.7274 -1.6906 0.7478 23 7 13.0352 -1.6645 0.7016 24 8 13.4511 -2.8002 0.5878 25 7 12.6130 -3.6785 0.5432 26 6 11.4220 -3.1390 0.6339 27 6 10.0767 -3.5489 0.6488 28 1 -0.3634 0.5954 0.8376 29 1 -0.3633 0.4277 -0.9345 30 1 -0.3633 -1.0231 0.0968 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4425 -0.0078 33 1 1.6703 1.9585 -0.8861 34 1 1.6831 1.9541 0.8938 35 1 0.8790 -3.0444 3.8513 36 1 2.6766 -2.3735 0.1317 37 1 2.7428 -2.5273 1.9038 38 1 4.5821 -0.8660 1.9793 39 1 4.5159 -0.7123 0.2071 40 1 5.0556 -3.1220 -0.0212 41 1 5.1215 -3.2751 1.7510 42 1 6.8833 -1.2105 0.9692 43 1 8.5343 -0.5324 0.9665 44 1 10.8113 0.3069 0.9444 45 1 9.8281 -4.5968 0.5679 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267313844.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:39 Heat of formation + Delta-G solvation = 101.057721 kcal Electronic energy + Delta-G solvation = -27460.605150 eV Core-core repulsion = 23483.563748 eV Total energy + Delta-G solvation = -3977.041402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -47.83150 -41.31407 -39.07534 -38.43433 -36.49071 -35.96182 -34.60787 -34.20670 -33.05304 -32.22129 -30.55563 -28.01382 -27.69497 -26.57898 -26.11678 -24.68760 -22.56010 -22.45078 -22.30129 -21.25867 -20.11501 -20.06702 -19.13902 -18.50809 -18.12323 -17.08011 -16.92766 -16.58456 -16.06840 -15.74652 -15.64516 -15.51314 -15.26158 -14.99394 -14.63568 -14.49862 -14.04438 -13.99393 -13.88819 -13.27262 -13.21768 -13.12032 -13.01783 -13.00470 -12.80518 -12.66512 -12.46708 -12.39601 -12.31853 -12.11070 -11.88964 -11.66809 -11.31947 -11.26454 -11.13871 -11.10463 -10.41964 -10.19357 -9.76088 -8.43864 -7.73077 -5.34384 -1.31865 -0.25061 0.64442 1.46161 1.48638 1.51814 1.56665 1.71288 2.04402 2.29295 2.35871 2.52764 2.56547 3.32157 3.38364 3.43880 3.63252 3.67190 3.86323 4.02482 4.24090 4.30228 4.40557 4.42387 4.57106 4.62465 4.68998 4.78302 4.83066 4.85907 4.91162 4.99917 5.01042 5.15734 5.18811 5.21239 5.24999 5.27642 5.38482 5.55718 5.66831 5.72362 5.80509 5.94945 6.42297 6.57778 7.05611 7.23575 7.28683 7.99401 8.51550 9.22050 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.016636 B = 0.002245 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.677520 B =12467.367741 C =12866.976656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.152 3.848 3 C -0.142 4.142 4 N -0.593 5.593 5 C -0.244 4.244 6 H 0.056 0.944 7 C -0.036 4.036 8 N -0.918 5.918 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.301 1.301 12 H -0.276 1.276 13 C 0.149 3.851 14 C -0.123 4.123 15 C 0.131 3.869 16 N -0.700 5.700 17 C 0.552 3.448 18 O -0.574 6.574 19 C -0.087 4.087 20 C -0.067 4.067 21 C -0.045 4.045 22 C 0.019 3.981 23 N -0.349 5.349 24 O 0.380 5.620 25 N -0.346 5.346 26 C -0.001 4.001 27 C -0.012 4.012 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.036 0.964 35 H 0.247 0.753 36 H 0.026 0.974 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.417 0.583 43 H 0.183 0.817 44 H 0.191 0.809 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.773 6.167 -7.370 21.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.046 3.954 3 C -0.200 4.200 4 N -0.314 5.314 5 C -0.375 4.375 6 H 0.073 0.927 7 C -0.233 4.233 8 N -0.562 5.562 9 Si 0.773 3.227 10 H -0.206 1.206 11 H -0.228 1.228 12 H -0.202 1.202 13 C 0.023 3.977 14 C -0.163 4.163 15 C 0.007 3.993 16 N -0.352 5.352 17 C 0.339 3.661 18 O -0.454 6.454 19 C -0.094 4.094 20 C -0.088 4.088 21 C -0.065 4.065 22 C -0.135 4.135 23 N -0.072 5.072 24 O 0.142 5.858 25 N -0.065 5.065 26 C -0.153 4.153 27 C -0.033 4.033 28 H 0.053 0.947 29 H 0.082 0.918 30 H 0.041 0.959 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.256 0.744 43 H 0.201 0.799 44 H 0.209 0.791 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 19.619 4.955 -7.410 21.550 hybrid contribution -1.049 0.017 1.331 1.695 sum 18.570 4.972 -6.080 20.162 Atomic orbital electron populations 1.21989 0.98191 0.99591 0.99974 1.20666 0.92314 0.93269 0.89105 1.22025 1.00585 0.96888 1.00550 1.44070 1.52483 1.33507 1.01317 1.18991 1.39733 0.90981 0.87760 0.92659 1.25747 0.99382 0.96602 1.01557 1.70127 1.48957 1.05082 1.32058 0.85712 0.78269 0.76725 0.81947 1.20567 1.22821 1.20233 1.20692 0.87449 0.90171 0.99432 1.22146 0.95932 0.96271 1.01982 1.21238 0.79203 0.97548 1.01311 1.45858 1.05796 1.10986 1.72561 1.18379 0.85602 0.85549 0.76543 1.90810 1.84953 1.18316 1.51356 1.19762 0.91972 0.94822 1.02886 1.21296 0.98255 0.93181 0.96098 1.21295 0.86529 0.99617 0.99033 1.24602 0.91036 0.95129 1.02739 1.75185 1.11690 1.02136 1.18223 1.85412 1.33229 1.07545 1.59639 1.75266 0.99230 1.14911 1.17095 1.22765 0.94669 0.91965 1.05862 1.20202 0.86126 1.01631 0.95337 0.94683 0.91802 0.95909 0.92233 0.92914 0.91753 0.94530 0.94394 0.95571 0.92440 0.92453 0.90817 0.91691 0.93370 0.74384 0.79946 0.79145 0.83073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.23 9.03 71.98 0.65 -4.58 16 2 C 0.15 5.62 3.36 44.99 0.15 5.77 16 3 C -0.14 -4.38 9.20 71.98 0.66 -3.71 16 4 N -0.59 -26.14 2.36 -678.02 -1.60 -27.74 16 5 C -0.24 -12.12 8.23 84.03 0.69 -11.43 16 6 H 0.06 2.76 6.95 -2.91 -0.02 2.74 16 7 C -0.04 -1.87 4.94 84.86 0.42 -1.45 16 8 N -0.92 -51.56 11.52 21.65 0.25 -51.31 16 9 Si 0.94 42.64 29.60 68.60 2.03 44.67 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 12 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 13 C 0.15 6.21 5.27 86.38 0.46 6.66 16 14 C -0.12 -3.82 5.65 30.59 0.17 -3.65 16 15 C 0.13 3.74 5.67 86.38 0.49 4.23 16 16 N -0.70 -14.94 5.50 -466.00 -2.56 -17.50 16 17 C 0.55 13.38 7.75 86.77 0.67 14.05 16 18 O -0.57 -19.10 16.21 -3.91 -0.06 -19.16 16 19 C -0.09 -1.56 5.86 -20.14 -0.12 -1.67 16 20 C -0.07 -0.69 9.39 22.33 0.21 -0.48 16 21 C -0.04 -0.45 10.27 23.43 0.24 -0.21 16 22 C 0.02 0.33 7.94 43.83 0.35 0.68 16 23 N -0.35 -6.51 12.28 -54.92 -0.67 -7.18 16 24 O 0.38 7.27 11.67 139.32 1.63 8.90 16 25 N -0.35 -7.36 12.29 -57.38 -0.71 -8.07 16 26 C 0.00 -0.01 7.75 42.57 0.33 0.32 16 27 C -0.01 -0.23 9.60 22.75 0.22 -0.02 16 28 H 0.03 1.42 7.80 -2.39 -0.02 1.40 16 29 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 2.02 7.78 -2.39 -0.02 2.00 16 32 H 0.05 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 34 H 0.04 1.25 7.06 -2.39 -0.02 1.23 16 35 H 0.25 13.71 8.31 -92.71 -0.77 12.94 16 36 H 0.03 1.05 7.90 -2.39 -0.02 1.03 16 37 H 0.06 2.87 5.56 -2.39 -0.01 2.86 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.42 5.77 6.36 -92.70 -0.59 5.18 16 43 H 0.18 0.66 6.23 -2.91 -0.02 0.64 16 44 H 0.19 0.61 8.06 -2.91 -0.02 0.59 16 45 H 0.15 3.28 7.52 -2.91 -0.02 3.26 16 Total: -1.00 -66.40 377.36 4.33 -62.07 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.44 Total: 10.82 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.60 Total: 4.50 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -5.29 Total: -111.80 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 1.56 Total: -10.26 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -66.40 4.33 -62.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267313844.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.131 kcal (2) G-P(sol) polarization free energy of solvation -66.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds