Wall clock time and date at job start Tue Mar 31 2020 16:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47131 * 2 1 4 4 N 1.46500 * 109.46801 * 179.97438 * 3 2 1 5 5 C 1.36937 * 120.00401 * 264.11498 * 4 3 2 6 6 H 1.08000 * 120.00055 * 188.01953 * 5 4 3 7 7 C 1.38812 * 119.99897 * 8.01849 * 5 4 3 8 8 N 1.31618 * 119.99867 * 25.64486 * 7 5 4 9 9 Si 1.86801 * 119.99909 * 205.64748 * 7 5 4 10 10 H 1.48500 * 109.46891 * 84.98977 * 9 7 5 11 11 H 1.48500 * 109.46659 * 204.98671 * 9 7 5 12 12 H 1.48497 * 109.46895 * 324.98504 * 9 7 5 13 13 C 1.46508 * 119.99633 * 84.11840 * 4 3 2 14 14 C 1.52998 * 109.46802 * 269.99582 * 13 4 3 15 15 N 1.46508 * 109.46802 * 179.97438 * 14 13 4 16 16 C 1.34774 * 119.99634 * 180.02562 * 15 14 13 17 17 O 1.21276 * 120.00502 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99365 * 179.97438 * 16 15 14 19 19 C 1.53009 * 109.46790 * 179.97438 * 18 16 15 20 20 H 1.08998 * 110.84848 * 301.58071 * 19 18 16 21 21 C 1.55043 * 110.78712 * 178.14782 * 19 18 16 22 22 C 1.54020 * 106.69787 * 199.34577 * 21 19 18 23 23 C 1.54169 * 108.63005 * 47.04909 * 22 21 19 24 24 S 1.82915 * 105.17291 * 332.22474 * 23 22 21 25 25 O 1.42108 * 109.35539 * 115.47140 * 24 23 22 26 26 O 1.42103 * 109.35295 * 248.66946 * 24 23 22 27 27 H 1.08999 * 109.46820 * 59.99794 * 1 2 3 28 28 H 1.08996 * 109.47580 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47430 * 300.00215 * 1 2 3 30 30 H 1.09001 * 109.46706 * 239.99917 * 2 1 3 31 31 H 1.08999 * 109.46820 * 120.00206 * 2 1 3 32 32 H 1.09002 * 109.46664 * 60.00211 * 3 2 1 33 33 H 1.08999 * 109.47437 * 299.99828 * 3 2 1 34 34 H 0.97000 * 119.99995 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.46731 * 149.99665 * 13 4 3 36 36 H 1.09000 * 109.46950 * 29.99728 * 13 4 3 37 37 H 1.09002 * 109.47159 * 60.00225 * 14 13 4 38 38 H 1.09000 * 109.47487 * 299.99817 * 14 13 4 39 39 H 0.97000 * 120.00063 * 0.02562 * 15 14 13 40 40 H 1.08997 * 109.47274 * 60.00767 * 18 16 15 41 41 H 1.08996 * 109.47864 * 299.99808 * 18 16 15 42 42 H 1.08994 * 110.03407 * 318.59132 * 21 19 18 43 43 H 1.08996 * 110.02912 * 79.96254 * 21 19 18 44 44 H 1.08996 * 109.61563 * 287.26393 * 22 21 19 45 45 H 1.08994 * 109.75275 * 166.91856 * 22 21 19 46 46 H 1.08996 * 110.31943 * 213.26691 * 23 22 21 47 47 H 1.09004 * 110.31707 * 91.17467 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1893 1.5641 1.1805 6 1 5.2614 1.6943 1.1720 7 6 3.5050 1.5202 2.3874 8 7 2.3547 0.8857 2.4690 9 14 4.2165 2.3617 3.8957 10 1 3.8296 3.7954 3.8913 11 1 3.6885 1.7102 5.1212 12 1 5.6970 2.2483 3.8735 13 6 4.2380 1.3122 -1.2612 14 6 4.4931 -0.1681 -1.5523 15 7 5.2255 -0.2983 -2.8145 16 6 5.5620 -1.5193 -3.2753 17 8 5.2582 -2.5102 -2.6455 18 6 6.3149 -1.6533 -4.5739 19 6 6.5702 -3.1336 -4.8650 20 1 7.1353 -3.5962 -4.0559 21 6 7.3036 -3.3095 -6.2196 22 6 7.0808 -4.7693 -6.6572 23 6 5.5862 -5.1101 -6.4928 24 16 4.9923 -4.0225 -5.1474 25 8 4.0276 -3.1165 -5.6652 26 8 4.6849 -4.8107 -4.0057 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.8763 0.8553 3.3123 35 1 5.1903 1.8366 -1.1839 36 1 3.6492 1.7453 -2.0698 37 1 3.5406 -0.6925 -1.6296 38 1 5.0819 -0.6012 -0.7437 39 1 5.4682 0.4941 -3.3184 40 1 7.2675 -1.1291 -4.4973 41 1 5.7257 -1.2201 -5.3820 42 1 6.8844 -2.6306 -6.9621 43 1 8.3688 -3.1148 -6.0954 44 1 7.6788 -5.4337 -6.0334 45 1 7.3714 -4.8895 -7.7007 46 1 5.4650 -6.1570 -6.2147 47 1 5.0463 -4.8994 -7.4160 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267316006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:28:19 Heat of formation + Delta-G solvation = -87.365950 kcal Electronic energy + Delta-G solvation = -27484.698916 eV Core-core repulsion = 23602.638051 eV Total energy + Delta-G solvation = -3882.060865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -39.65919 -37.16502 -36.87365 -36.51025 -35.88511 -34.42568 -32.61522 -31.88186 -31.31119 -28.49928 -27.10623 -25.46656 -24.54579 -23.08987 -21.69589 -20.78816 -20.44588 -19.76955 -18.76466 -17.40951 -17.02995 -16.71811 -16.65379 -15.85282 -15.50730 -15.13413 -14.87073 -14.67358 -14.24476 -14.08731 -13.90768 -13.57033 -13.39859 -13.03067 -12.89801 -12.52732 -12.33137 -12.32812 -12.20084 -12.07052 -11.95693 -11.88182 -11.55128 -11.38742 -11.28606 -11.00826 -10.82708 -10.75860 -10.58812 -10.36579 -10.27667 -9.93338 -9.89528 -9.83683 -9.61741 -9.18204 -8.62865 -8.31080 -6.90941 -5.75445 -3.07290 -0.07433 2.48670 2.73616 3.25601 3.41497 3.48049 3.49529 3.49638 3.82875 4.09084 4.15411 4.30908 4.38907 4.52734 4.56727 4.75527 4.93892 4.99294 5.16055 5.24357 5.33502 5.35248 5.38899 5.42222 5.56239 5.57465 5.86272 5.93420 6.24443 6.28661 6.34366 6.59816 6.68153 6.70788 6.73782 6.89966 7.05975 7.25262 7.33523 7.69603 7.70508 7.83377 8.15908 8.34608 8.39634 9.24406 9.86107 10.30589 11.27800 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.020176 B = 0.002724 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.425392 B =10277.253005 C =10886.834585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.132 4.132 3 C 0.171 3.829 4 N -0.591 5.591 5 C -0.257 4.257 6 H 0.074 0.926 7 C 0.001 3.999 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.289 1.289 11 H -0.293 1.293 12 H -0.282 1.282 13 C 0.143 3.857 14 C 0.085 3.915 15 N -0.717 5.717 16 C 0.489 3.511 17 O -0.536 6.536 18 C -0.121 4.121 19 C -0.536 4.536 20 H 0.151 0.849 21 C -0.120 4.120 22 C -0.113 4.113 23 C -0.612 4.612 24 S 2.394 3.606 25 O -0.935 6.935 26 O -0.910 6.910 27 H 0.030 0.970 28 H 0.033 0.967 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.098 0.902 32 H 0.090 0.910 33 H 0.004 0.996 34 H 0.253 0.747 35 H 0.050 0.950 36 H 0.043 0.957 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.397 0.603 40 H 0.113 0.887 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.091 0.909 46 H 0.136 0.864 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.068 -7.023 -21.681 24.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.171 4.171 3 C 0.046 3.954 4 N -0.311 5.311 5 C -0.386 4.386 6 H 0.092 0.908 7 C -0.197 4.197 8 N -0.534 5.534 9 Si 0.727 3.273 10 H -0.216 1.216 11 H -0.220 1.220 12 H -0.208 1.208 13 C 0.015 3.985 14 C -0.040 4.040 15 N -0.367 5.367 16 C 0.273 3.727 17 O -0.414 6.414 18 C -0.162 4.162 19 C -0.645 4.645 20 H 0.169 0.831 21 C -0.159 4.159 22 C -0.151 4.151 23 C -0.740 4.740 24 S 2.574 3.426 25 O -0.932 6.932 26 O -0.907 6.907 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.117 0.883 32 H 0.108 0.892 33 H 0.022 0.978 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.230 0.770 40 H 0.132 0.868 41 H 0.129 0.871 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.109 0.891 46 H 0.154 0.846 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.832 -7.649 -20.595 23.678 hybrid contribution 1.239 0.433 0.198 1.327 sum 10.070 -7.216 -20.397 23.865 Atomic orbital electron populations 1.21624 0.98554 0.99376 0.99954 1.22230 0.92971 1.00439 1.01469 1.20938 0.81485 0.94572 0.98414 1.44252 1.01945 1.83562 1.01381 1.19258 0.92225 1.43592 0.83501 0.90787 1.24730 0.97581 1.00090 0.97280 1.70172 1.17139 1.41076 1.25002 0.86371 0.78369 0.79881 0.82653 1.21615 1.21970 1.20805 1.20955 0.96368 0.91627 0.89582 1.22832 0.96168 1.01837 0.83146 1.46122 1.57646 1.07353 1.25587 1.20700 0.80353 0.84495 0.87130 1.90873 1.54774 1.36549 1.59160 1.21374 1.03363 0.94053 0.97446 1.30243 1.21726 1.07046 1.05511 0.83148 1.22373 1.03508 0.96770 0.93200 1.21886 0.92413 0.96315 1.04477 1.30715 1.06870 1.16409 1.20031 1.09263 0.78394 0.77839 0.77059 1.93593 1.55922 1.63068 1.80595 1.93643 1.82224 1.68807 1.46072 0.95070 0.94762 0.93022 0.95957 0.88340 0.89204 0.97817 0.93693 0.93216 0.93817 0.91299 0.91268 0.76963 0.86843 0.87075 0.89359 0.88248 0.89693 0.89062 0.84613 0.84804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.91 37.16 0.37 -2.41 16 2 C -0.13 -3.09 5.60 -26.73 -0.15 -3.24 16 3 C 0.17 4.10 4.92 -4.04 -0.02 4.08 16 4 N -0.59 -14.33 2.54 -173.24 -0.44 -14.77 16 5 C -0.26 -6.84 9.70 -15.06 -0.15 -6.98 16 6 H 0.07 1.94 7.94 -52.49 -0.42 1.52 16 7 C 0.00 0.03 4.89 -17.43 -0.09 -0.05 16 8 N -0.89 -24.65 8.62 55.49 0.48 -24.17 16 9 Si 0.90 21.48 29.62 -169.99 -5.04 16.44 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.14 2.80 5.82 -4.04 -0.02 2.77 16 14 C 0.09 1.67 5.88 -4.04 -0.02 1.65 16 15 N -0.72 -10.74 5.56 -60.29 -0.33 -11.07 16 16 C 0.49 7.56 7.58 -10.98 -0.08 7.48 16 17 O -0.54 -10.83 14.14 -10.03 -0.14 -10.97 16 18 C -0.12 -1.15 5.03 -27.88 -0.14 -1.29 16 19 C -0.54 -4.75 2.74 -25.65 -0.07 -4.83 16 20 H 0.15 1.34 8.09 -51.93 -0.42 0.92 16 21 C -0.12 -0.57 5.90 -25.12 -0.15 -0.72 16 22 C -0.11 -0.51 6.41 -25.59 -0.16 -0.67 16 23 C -0.61 -4.04 7.26 37.77 0.27 -3.76 16 24 S 2.39 28.97 4.73 -107.50 -0.51 28.46 16 25 O -0.93 -13.98 17.33 -57.71 -1.00 -14.98 16 26 O -0.91 -15.71 17.11 -64.42 -1.10 -16.81 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.02 0.51 5.98 -51.93 -0.31 0.20 16 31 H 0.10 2.67 6.33 -51.93 -0.33 2.34 16 32 H 0.09 2.38 5.85 -51.93 -0.30 2.08 16 33 H 0.00 0.08 7.98 -51.93 -0.41 -0.33 16 34 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 35 H 0.05 0.91 8.03 -51.93 -0.42 0.49 16 36 H 0.04 0.77 7.95 -51.93 -0.41 0.36 16 37 H 0.07 1.53 5.92 -51.93 -0.31 1.22 16 38 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.40 4.34 8.47 -40.82 -0.35 3.99 16 40 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.11 0.87 7.76 -51.93 -0.40 0.47 16 42 H 0.09 0.31 8.08 -51.93 -0.42 -0.11 16 43 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 46 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 47 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 380.72 15.07 5.74 5.74 Total: -1.00 -36.78 380.72 -10.62 -47.40 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -7.86 Total: 2.74 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.41 Total: -7.99 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: -0.30 Total: -50.01 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -2.24 Total: -42.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.04 Total: 16.44 kcal Atomic # 16 Polarization: 28.97 SS G_CDS: -0.51 Total: 28.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.78 -10.62 -47.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267316006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.968 kcal (2) G-P(sol) polarization free energy of solvation -36.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds