Wall clock time and date at job start Tue Mar 31 2020 16:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46785 * 2 1 4 4 N 1.46503 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00050 * 180.02562 * 4 3 2 6 6 H 1.08006 * 119.99998 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31623 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99958 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46901 * 90.00146 * 9 7 5 11 11 H 1.48503 * 109.47026 * 209.99869 * 9 7 5 12 12 H 1.48498 * 109.47220 * 329.99853 * 9 7 5 13 13 N 1.46499 * 109.46807 * 119.99851 * 2 1 3 14 14 C 1.34777 * 120.00234 * 304.29713 * 13 2 1 15 15 O 1.21506 * 120.00134 * 354.98997 * 14 13 2 16 16 C 1.48227 * 119.99845 * 174.99012 * 14 13 2 17 17 C 1.39635 * 119.65120 * 180.27843 * 16 14 13 18 18 C 1.38538 * 119.24221 * 180.22634 * 17 16 14 19 19 C 1.38589 * 118.55423 * 359.50359 * 18 17 16 20 20 C 1.39588 * 119.24744 * 0.24972 * 19 18 17 21 21 C 1.48225 * 119.65117 * 179.97438 * 20 19 18 22 22 N 1.34771 * 119.99875 * 179.97438 * 21 20 19 23 23 O 1.21509 * 120.00070 * 0.02562 * 21 20 19 24 24 N 1.32346 * 119.65621 * 359.97438 * 16 14 13 25 25 C 1.52995 * 109.47206 * 240.00083 * 2 1 3 26 26 C 1.53004 * 117.49977 * 12.70865 * 25 2 1 27 27 C 1.53003 * 117.49926 * 304.08450 * 25 2 1 28 28 H 1.08998 * 109.47485 * 299.99763 * 1 2 3 29 29 H 1.09001 * 109.47533 * 59.99978 * 1 2 3 30 30 H 1.09007 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47416 * 299.99749 * 3 2 1 32 32 H 1.09006 * 109.47416 * 60.00233 * 3 2 1 33 33 H 0.97000 * 120.00145 * 359.97438 * 4 3 2 34 34 H 0.96996 * 120.00040 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99960 * 124.30535 * 13 2 1 36 36 H 1.07995 * 120.37556 * 359.97438 * 17 16 14 37 37 H 1.08007 * 120.72406 * 179.77777 * 18 17 16 38 38 H 1.08002 * 120.37286 * 180.23202 * 19 18 17 39 39 H 0.97003 * 119.99951 * 0.02562 * 22 21 20 40 40 H 0.96999 * 120.00605 * 180.02562 * 22 21 20 41 41 H 1.09006 * 115.54950 * 158.42054 * 25 2 1 42 42 H 1.08991 * 117.49548 * 0.02562 * 26 25 2 43 43 H 1.08998 * 117.49744 * 145.02076 * 26 25 2 44 44 H 1.08998 * 117.50148 * 214.97901 * 27 25 2 45 45 H 1.09005 * 117.49691 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1896 2.6284 0.0013 6 1 3.6495 3.5638 0.0009 7 6 5.5776 2.6285 0.0024 8 7 6.2358 1.4886 0.0033 9 14 6.5116 4.2463 0.0025 10 1 6.7580 4.6755 1.4027 11 1 7.8098 4.0685 -0.6964 12 1 5.7097 5.2810 -0.6986 13 7 2.0182 -0.6906 1.1962 14 6 1.6227 -0.2828 2.4184 15 8 0.9350 0.7122 2.5339 16 6 2.0268 -1.0482 3.6218 17 6 1.6081 -0.6225 4.8840 18 6 1.9946 -1.3416 6.0033 19 6 2.7791 -2.4703 5.8272 20 6 3.1580 -2.8430 4.5365 21 6 3.9975 -4.0484 4.3379 22 7 4.3669 -4.4148 3.0947 23 8 4.3518 -4.7065 5.2958 24 7 2.7755 -2.1313 3.4881 25 6 2.0400 -0.7212 -1.2492 26 6 1.0273 -1.0163 -2.3575 27 6 1.5584 -2.1544 -1.4836 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 3.9899 0.6025 0.0013 34 1 7.2058 1.4887 0.0045 35 1 2.6262 -1.4413 1.1086 36 1 0.9934 0.2595 4.9868 37 1 1.6874 -1.0317 6.9914 38 1 3.0940 -3.0548 6.6791 39 1 4.0836 -3.8896 2.3299 40 1 4.9159 -5.2038 2.9645 41 1 3.0589 -0.4771 -1.5499 42 1 -0.0021 -0.6963 -2.1968 43 1 1.3798 -0.9663 -3.3877 44 1 2.2603 -2.8531 -1.9389 45 1 0.8779 -2.5833 -0.7480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269651662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:41 Heat of formation + Delta-G solvation = 8.924044 kcal Electronic energy + Delta-G solvation = -29076.600169 eV Core-core repulsion = 25095.563551 eV Total energy + Delta-G solvation = -3981.036618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.99552 -39.94369 -38.85082 -37.60065 -34.70297 -34.07974 -33.56490 -32.66546 -31.79986 -30.90737 -29.57563 -25.96065 -25.09312 -24.85399 -23.46504 -22.37124 -22.05928 -21.45054 -20.34146 -18.85165 -18.42075 -17.62937 -17.15509 -17.10844 -16.31228 -15.92199 -15.41799 -15.33928 -15.13054 -14.82827 -14.58712 -14.41823 -14.17177 -13.70704 -13.49784 -13.45030 -13.10645 -12.72481 -12.37609 -12.28046 -12.09828 -11.94952 -11.41033 -11.10869 -10.92698 -10.80496 -10.77365 -10.74988 -10.23693 -10.21125 -10.08164 -10.00804 -9.86172 -9.84082 -9.65885 -9.46484 -9.38460 -8.78990 -8.61764 -6.83437 -5.72722 -2.98901 0.33854 0.73713 2.38512 3.06396 3.10960 3.23812 3.45974 3.51455 3.52604 3.82818 3.86853 4.09743 4.62287 4.63101 4.65095 4.75022 4.78126 4.79179 5.08101 5.17450 5.25568 5.29117 5.35353 5.43895 5.62679 5.64122 5.72595 5.78173 5.85575 5.96719 6.03971 6.19286 6.23032 6.25257 6.27305 6.41876 6.54451 6.56559 6.67523 6.86901 7.06766 7.08247 7.38343 7.75411 7.87996 8.03663 8.46088 8.46709 9.58290 10.16242 10.51964 11.50342 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.004301 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.619101 B = 6508.237157 C = 7625.365572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.200 3.800 3 C 0.144 3.856 4 N -0.726 5.726 5 C -0.230 4.230 6 H 0.069 0.931 7 C -0.015 4.015 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.282 1.282 13 N -0.685 5.685 14 C 0.577 3.423 15 O -0.525 6.525 16 C 0.091 3.909 17 C -0.089 4.089 18 C -0.087 4.087 19 C -0.095 4.095 20 C 0.071 3.929 21 C 0.583 3.417 22 N -0.831 5.831 23 O -0.541 6.541 24 N -0.430 5.430 25 C -0.150 4.150 26 C -0.172 4.172 27 C -0.182 4.182 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.045 0.955 33 H 0.382 0.618 34 H 0.253 0.747 35 H 0.407 0.593 36 H 0.155 0.845 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.414 0.586 40 H 0.406 0.594 41 H 0.123 0.877 42 H 0.099 0.901 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.552 -12.265 5.080 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.114 3.886 3 C 0.016 3.984 4 N -0.370 5.370 5 C -0.362 4.362 6 H 0.086 0.914 7 C -0.211 4.211 8 N -0.585 5.585 9 Si 0.736 3.264 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.335 5.335 14 C 0.361 3.639 15 O -0.401 6.401 16 C -0.050 4.050 17 C -0.110 4.110 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.069 4.069 21 C 0.366 3.634 22 N -0.394 5.394 23 O -0.417 6.417 24 N -0.144 5.144 25 C -0.169 4.169 26 C -0.209 4.209 27 C -0.219 4.219 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.062 0.938 33 H 0.216 0.784 34 H 0.063 0.937 35 H 0.242 0.758 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.245 0.755 40 H 0.237 0.763 41 H 0.141 0.859 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.626 -11.939 4.983 17.394 hybrid contribution 1.123 0.518 0.326 1.279 sum -10.503 -11.421 5.309 16.400 Atomic orbital electron populations 1.22291 0.94545 1.01730 1.03740 1.20110 0.93201 0.93261 0.81994 1.21070 0.86529 0.91527 0.99282 1.42237 0.99148 1.06200 1.89435 1.19230 0.89003 0.86212 1.41735 0.91351 1.24670 0.96304 0.96643 1.03450 1.69644 1.06607 1.23767 1.58468 0.86224 0.79436 0.83324 0.77448 1.21922 1.21895 1.20814 1.45726 1.48136 1.35068 1.04543 1.17608 0.80304 0.83584 0.82433 1.90731 1.39077 1.24499 1.85786 1.21339 0.96258 0.92852 0.94563 1.22387 0.97144 0.99782 0.91673 1.21660 0.96019 0.93873 0.99744 1.22288 0.95038 0.96288 0.97982 1.21016 0.99594 0.96287 0.90052 1.17793 0.78997 0.83087 0.83555 1.43628 1.55042 1.32148 1.08595 1.90822 1.56123 1.54088 1.40681 1.67358 1.08297 1.04950 1.33828 1.22553 1.00820 0.97062 0.96427 1.23049 0.99237 1.02773 0.95875 1.22941 1.03979 0.91519 1.03439 0.90158 0.91359 0.92881 0.95713 0.93761 0.78405 0.93741 0.75767 0.82708 0.83234 0.83036 0.75541 0.76313 0.85893 0.88268 0.88867 0.88895 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 6.97 37.16 0.26 -2.03 16 2 C 0.20 3.19 0.54 -131.83 -0.07 3.12 16 3 C 0.14 2.99 5.03 -4.04 -0.02 2.97 16 4 N -0.73 -18.08 5.04 -59.91 -0.30 -18.39 16 5 C -0.23 -6.50 9.99 -15.06 -0.15 -6.65 16 6 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 7 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 8 N -0.94 -27.97 13.06 55.49 0.72 -27.25 16 9 Si 0.90 22.76 29.55 -169.99 -5.02 17.73 16 10 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 N -0.69 -10.68 4.71 -48.43 -0.23 -10.91 16 14 C 0.58 9.56 7.22 -12.15 -0.09 9.47 16 15 O -0.52 -9.80 12.55 5.36 0.07 -9.74 16 16 C 0.09 1.31 6.75 -83.02 -0.56 0.75 16 17 C -0.09 -1.07 9.63 -38.95 -0.38 -1.45 16 18 C -0.09 -0.84 10.16 -39.34 -0.40 -1.24 16 19 C -0.10 -1.03 9.63 -38.95 -0.38 -1.40 16 20 C 0.07 0.90 6.75 -83.03 -0.56 0.34 16 21 C 0.58 7.36 8.09 -12.16 -0.10 7.26 16 22 N -0.83 -8.00 8.86 30.62 0.27 -7.72 16 23 O -0.54 -8.14 17.16 5.36 0.09 -8.05 16 24 N -0.43 -5.73 8.72 -6.38 -0.06 -5.78 16 25 C -0.15 -2.19 4.84 -90.62 -0.44 -2.63 16 26 C -0.17 -2.05 9.64 -26.73 -0.26 -2.31 16 27 C -0.18 -2.06 9.82 -26.73 -0.26 -2.32 16 28 H 0.08 1.25 6.03 -51.93 -0.31 0.93 16 29 H 0.07 0.87 6.78 -51.93 -0.35 0.52 16 30 H 0.05 0.65 6.99 -51.93 -0.36 0.28 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.04 1.02 6.32 -51.93 -0.33 0.69 16 33 H 0.38 9.78 6.62 -40.82 -0.27 9.51 16 34 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.41 5.89 7.81 -40.82 -0.32 5.57 16 36 H 0.16 1.74 7.64 -52.49 -0.40 1.34 16 37 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.15 1.42 7.64 -52.49 -0.40 1.02 16 39 H 0.41 3.68 8.16 -40.82 -0.33 3.34 16 40 H 0.41 3.11 8.93 -40.82 -0.36 2.74 16 41 H 0.12 2.17 7.09 -51.93 -0.37 1.80 16 42 H 0.10 1.09 5.88 -51.93 -0.31 0.79 16 43 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 45 H 0.09 0.97 7.35 -51.93 -0.38 0.59 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -34.11 373.39 -8.06 -42.17 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -5.74 Total: 18.95 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -3.49 Total: 3.35 kcal Atomic # 7 Polarization: -70.46 SS G_CDS: 0.41 Total: -70.05 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.16 Total: -17.79 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.11 -8.06 -42.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269651662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.096 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds