Wall clock time and date at job start Tue Mar 31 2020 16:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.46785 * 2 1 4 4 N 1.46503 * 109.46927 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00050 * 180.02562 * 4 3 2 6 6 H 1.08006 * 119.99998 * 359.97438 * 5 4 3 7 7 C 1.38809 * 120.00057 * 179.97438 * 5 4 3 8 8 N 1.31623 * 120.00192 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 119.99958 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46901 * 90.00146 * 9 7 5 11 11 H 1.48503 * 109.47026 * 209.99869 * 9 7 5 12 12 H 1.48498 * 109.47220 * 329.99853 * 9 7 5 13 13 N 1.46499 * 109.46807 * 119.99851 * 2 1 3 14 14 C 1.34777 * 120.00234 * 304.29713 * 13 2 1 15 15 O 1.21506 * 120.00134 * 354.98997 * 14 13 2 16 16 C 1.48227 * 119.99845 * 174.99012 * 14 13 2 17 17 C 1.39635 * 119.65120 * 180.27843 * 16 14 13 18 18 C 1.38538 * 119.24221 * 180.22634 * 17 16 14 19 19 C 1.38589 * 118.55423 * 359.50359 * 18 17 16 20 20 C 1.39588 * 119.24744 * 0.24972 * 19 18 17 21 21 C 1.48225 * 119.65117 * 179.97438 * 20 19 18 22 22 N 1.34771 * 119.99875 * 179.97438 * 21 20 19 23 23 O 1.21509 * 120.00070 * 0.02562 * 21 20 19 24 24 N 1.32346 * 119.65621 * 359.97438 * 16 14 13 25 25 C 1.52995 * 109.47206 * 240.00083 * 2 1 3 26 26 C 1.53004 * 117.49977 * 12.70865 * 25 2 1 27 27 C 1.53003 * 117.49926 * 304.08450 * 25 2 1 28 28 H 1.08998 * 109.47485 * 299.99763 * 1 2 3 29 29 H 1.09001 * 109.47533 * 59.99978 * 1 2 3 30 30 H 1.09007 * 109.47066 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47416 * 299.99749 * 3 2 1 32 32 H 1.09006 * 109.47416 * 60.00233 * 3 2 1 33 33 H 0.97000 * 120.00145 * 359.97438 * 4 3 2 34 34 H 0.96996 * 120.00040 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99960 * 124.30535 * 13 2 1 36 36 H 1.07995 * 120.37556 * 359.97438 * 17 16 14 37 37 H 1.08007 * 120.72406 * 179.77777 * 18 17 16 38 38 H 1.08002 * 120.37286 * 180.23202 * 19 18 17 39 39 H 0.97003 * 119.99951 * 0.02562 * 22 21 20 40 40 H 0.96999 * 120.00605 * 180.02562 * 22 21 20 41 41 H 1.09006 * 115.54950 * 158.42054 * 25 2 1 42 42 H 1.08991 * 117.49548 * 0.02562 * 26 25 2 43 43 H 1.08998 * 117.49744 * 145.02076 * 26 25 2 44 44 H 1.08998 * 117.50148 * 214.97901 * 27 25 2 45 45 H 1.09005 * 117.49691 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1896 2.6284 0.0013 6 1 3.6495 3.5638 0.0009 7 6 5.5776 2.6285 0.0024 8 7 6.2358 1.4886 0.0033 9 14 6.5116 4.2463 0.0025 10 1 6.7580 4.6755 1.4027 11 1 7.8098 4.0685 -0.6964 12 1 5.7097 5.2810 -0.6986 13 7 2.0182 -0.6906 1.1962 14 6 1.6227 -0.2828 2.4184 15 8 0.9350 0.7122 2.5339 16 6 2.0268 -1.0482 3.6218 17 6 1.6081 -0.6225 4.8840 18 6 1.9946 -1.3416 6.0033 19 6 2.7791 -2.4703 5.8272 20 6 3.1580 -2.8430 4.5365 21 6 3.9975 -4.0484 4.3379 22 7 4.3669 -4.4148 3.0947 23 8 4.3518 -4.7065 5.2958 24 7 2.7755 -2.1313 3.4881 25 6 2.0400 -0.7212 -1.2492 26 6 1.0273 -1.0163 -2.3575 27 6 1.5584 -2.1544 -1.4836 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6765 1.9564 0.8900 33 1 3.9899 0.6025 0.0013 34 1 7.2058 1.4887 0.0045 35 1 2.6262 -1.4413 1.1086 36 1 0.9934 0.2595 4.9868 37 1 1.6874 -1.0317 6.9914 38 1 3.0940 -3.0548 6.6791 39 1 4.0836 -3.8896 2.3299 40 1 4.9159 -5.2038 2.9645 41 1 3.0589 -0.4771 -1.5499 42 1 -0.0021 -0.6963 -2.1968 43 1 1.3798 -0.9663 -3.3877 44 1 2.2603 -2.8531 -1.9389 45 1 0.8779 -2.5833 -0.7480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269651662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:40 Heat of formation + Delta-G solvation = -17.549268 kcal Electronic energy + Delta-G solvation = -29077.748138 eV Core-core repulsion = 25095.563551 eV Total energy + Delta-G solvation = -3982.184587 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.03388 -41.10684 -39.87390 -38.78062 -36.36158 -35.17422 -34.87648 -33.74757 -33.00114 -32.48097 -30.97934 -27.59506 -26.16729 -25.94406 -24.84256 -24.04388 -23.11227 -22.39286 -21.43479 -20.15388 -19.45780 -19.21204 -18.66204 -18.04210 -17.25614 -16.99529 -16.81707 -16.49048 -16.34585 -16.08289 -15.98778 -15.72447 -15.35925 -15.12682 -14.97201 -14.46638 -14.35074 -14.13936 -13.75036 -13.65982 -13.22271 -13.16286 -13.06008 -12.80158 -12.45800 -12.23564 -12.10496 -12.00231 -11.84996 -11.73941 -11.26223 -11.11387 -11.08577 -11.00147 -10.88587 -10.77393 -10.57172 -10.37757 -9.93429 -8.93240 -7.94332 -5.20081 -0.61819 -0.18941 1.39910 1.44361 1.45571 1.53968 1.92205 2.02792 2.28402 2.55334 2.81066 2.86875 3.08750 3.38710 3.61536 3.68999 3.81036 3.86346 3.91736 3.92735 3.97130 4.19412 4.26839 4.32668 4.41018 4.48063 4.64835 4.81040 4.88366 4.91028 4.92039 4.97632 5.00823 5.05455 5.14872 5.29925 5.35452 5.36765 5.46172 5.49594 5.65711 5.75019 6.14856 6.27938 6.40535 6.68098 7.15906 7.21935 7.35618 8.11167 8.38555 9.28495 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008598 B = 0.004301 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3255.619101 B = 6508.237157 C = 7625.365572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.207 3.793 3 C 0.145 3.855 4 N -0.729 5.729 5 C -0.241 4.241 6 H 0.065 0.935 7 C -0.069 4.069 8 N -0.963 5.963 9 Si 0.966 3.034 10 H -0.292 1.292 11 H -0.292 1.292 12 H -0.272 1.272 13 N -0.682 5.682 14 C 0.570 3.430 15 O -0.554 6.554 16 C 0.064 3.936 17 C -0.093 4.093 18 C -0.069 4.069 19 C -0.090 4.090 20 C 0.054 3.946 21 C 0.580 3.420 22 N -0.816 5.816 23 O -0.569 6.569 24 N -0.433 5.433 25 C -0.176 4.176 26 C -0.161 4.161 27 C -0.155 4.155 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.022 0.978 32 H 0.021 0.979 33 H 0.377 0.623 34 H 0.250 0.750 35 H 0.411 0.589 36 H 0.160 0.840 37 H 0.192 0.808 38 H 0.169 0.831 39 H 0.419 0.581 40 H 0.416 0.584 41 H 0.087 0.913 42 H 0.113 0.887 43 H 0.099 0.901 44 H 0.105 0.895 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.489 -13.114 5.482 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.122 3.878 3 C 0.018 3.982 4 N -0.372 5.372 5 C -0.374 4.374 6 H 0.083 0.917 7 C -0.262 4.262 8 N -0.614 5.614 9 Si 0.796 3.204 10 H -0.219 1.219 11 H -0.219 1.219 12 H -0.197 1.197 13 N -0.331 5.331 14 C 0.355 3.645 15 O -0.433 6.433 16 C -0.077 4.077 17 C -0.114 4.114 18 C -0.094 4.094 19 C -0.111 4.111 20 C -0.087 4.087 21 C 0.363 3.637 22 N -0.379 5.379 23 O -0.449 6.449 24 N -0.148 5.148 25 C -0.195 4.195 26 C -0.198 4.198 27 C -0.192 4.192 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.039 0.961 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.247 0.753 36 H 0.177 0.823 37 H 0.209 0.791 38 H 0.186 0.814 39 H 0.250 0.750 40 H 0.249 0.751 41 H 0.105 0.895 42 H 0.131 0.869 43 H 0.117 0.883 44 H 0.123 0.877 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.584 -12.798 5.343 18.727 hybrid contribution 1.395 0.778 0.210 1.611 sum -11.189 -12.020 5.553 17.336 Atomic orbital electron populations 1.22210 0.92510 1.03124 1.03472 1.19951 0.94485 0.90419 0.82954 1.21120 0.84245 0.95135 0.97728 1.42309 1.00792 1.05038 1.89092 1.19552 0.89627 0.87226 1.40950 0.91703 1.25400 0.97099 0.99738 1.03931 1.69784 1.06446 1.25502 1.59655 0.85247 0.78025 0.79946 0.77211 1.21933 1.21855 1.19718 1.45746 1.48023 1.34913 1.04424 1.18030 0.79798 0.83425 0.83243 1.90705 1.40438 1.25788 1.86323 1.21168 0.98184 0.93791 0.94519 1.22571 0.97058 1.00175 0.91574 1.22074 0.94246 0.92411 1.00716 1.22595 0.94286 0.96497 0.97737 1.21207 1.00198 0.96480 0.90814 1.17871 0.78925 0.82969 0.83898 1.43555 1.54213 1.32224 1.07935 1.90803 1.57472 1.55009 1.41573 1.67233 1.08303 1.04832 1.34420 1.22243 0.99866 1.00289 0.97117 1.23180 0.99023 1.02171 0.95459 1.23017 1.03380 0.89990 1.02802 0.91945 0.90099 0.90545 0.96033 0.96117 0.79027 0.94148 0.75268 0.82277 0.79062 0.81363 0.74989 0.75132 0.89483 0.86870 0.88265 0.87676 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 6.97 71.98 0.50 -3.64 16 2 C 0.21 6.66 0.54 3.60 0.00 6.66 16 3 C 0.15 6.23 5.03 86.38 0.43 6.67 16 4 N -0.73 -37.53 5.04 -343.45 -1.73 -39.26 16 5 C -0.24 -13.93 9.99 84.03 0.84 -13.09 16 6 H 0.06 3.70 7.83 -2.91 -0.02 3.68 16 7 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 8 N -0.96 -58.59 13.06 21.65 0.28 -58.31 16 9 Si 0.97 47.25 29.55 68.60 2.03 49.28 16 10 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 11 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 13 N -0.68 -21.53 4.71 -425.42 -2.00 -23.53 16 14 C 0.57 19.23 7.22 86.90 0.63 19.86 16 15 O -0.55 -21.32 12.55 -3.73 -0.05 -21.36 16 16 C 0.06 1.84 6.75 42.06 0.28 2.12 16 17 C -0.09 -2.14 9.63 22.68 0.22 -1.92 16 18 C -0.07 -1.15 10.16 22.43 0.23 -0.92 16 19 C -0.09 -1.78 9.63 22.68 0.22 -1.56 16 20 C 0.05 1.31 6.75 42.05 0.28 1.60 16 21 C 0.58 14.21 8.09 86.90 0.70 14.92 16 22 N -0.82 -15.07 8.86 -175.35 -1.55 -16.62 16 23 O -0.57 -16.73 17.16 -3.74 -0.06 -16.79 16 24 N -0.43 -11.40 8.72 -174.08 -1.52 -12.92 16 25 C -0.18 -5.07 4.84 -10.79 -0.05 -5.12 16 26 C -0.16 -3.51 9.64 30.60 0.29 -3.21 16 27 C -0.16 -3.16 9.82 30.60 0.30 -2.86 16 28 H 0.06 1.93 6.03 -2.39 -0.01 1.91 16 29 H 0.08 1.93 6.78 -2.39 -0.02 1.91 16 30 H 0.08 1.68 6.99 -2.38 -0.02 1.67 16 31 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.02 1.00 6.32 -2.38 -0.02 0.98 16 33 H 0.38 20.01 6.62 -92.71 -0.61 19.40 16 34 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.41 12.04 7.81 -92.71 -0.72 11.32 16 36 H 0.16 3.47 7.64 -2.91 -0.02 3.44 16 37 H 0.19 1.54 8.06 -2.91 -0.02 1.52 16 38 H 0.17 2.74 7.64 -2.91 -0.02 2.72 16 39 H 0.42 7.15 8.16 -92.71 -0.76 6.40 16 40 H 0.42 5.98 8.93 -92.71 -0.83 5.15 16 41 H 0.09 3.18 7.09 -2.38 -0.02 3.16 16 42 H 0.11 2.16 5.88 -2.39 -0.01 2.14 16 43 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 45 H 0.11 1.90 7.35 -2.38 -0.02 1.88 16 Total: -1.00 -75.32 373.39 -1.09 -76.41 By element: Atomic # 1 Polarization: 49.00 SS G_CDS: -1.83 Total: 47.17 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: 5.35 Total: 15.93 kcal Atomic # 7 Polarization: -144.11 SS G_CDS: -6.52 Total: -150.64 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.11 Total: -38.15 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -75.32 -1.09 -76.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269651662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.861 kcal (2) G-P(sol) polarization free energy of solvation -75.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds