Wall clock time and date at job start Tue Mar 31 2020 16:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46843 * 2 1 4 4 N 1.46496 * 109.47323 * 300.00439 * 3 2 1 5 5 C 1.36936 * 119.99913 * 180.02562 * 4 3 2 6 6 H 1.07994 * 120.00215 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99886 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00270 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47126 * 89.99889 * 9 7 5 11 11 H 1.48493 * 109.47381 * 209.99822 * 9 7 5 12 12 H 1.48499 * 109.47394 * 330.00413 * 9 7 5 13 13 N 1.46502 * 109.46657 * 240.00630 * 2 1 3 14 14 C 1.34777 * 119.99649 * 174.06112 * 13 2 1 15 15 O 1.21512 * 120.00050 * 355.56388 * 14 13 2 16 16 C 1.48232 * 120.00127 * 175.83994 * 14 13 2 17 17 C 1.39619 * 119.65402 * 179.44626 * 16 14 13 18 18 C 1.38545 * 119.24281 * 179.79277 * 17 16 14 19 19 C 1.38592 * 118.55442 * 0.47489 * 18 17 16 20 20 C 1.39579 * 119.24572 * 359.75134 * 19 18 17 21 21 C 1.48228 * 119.65625 * 179.97438 * 20 19 18 22 22 N 1.34776 * 120.00216 * 180.02562 * 21 20 19 23 23 O 1.21506 * 119.99459 * 0.02562 * 21 20 19 24 24 N 1.32346 * 119.64976 * 359.72160 * 16 14 13 25 25 C 1.52989 * 109.47406 * 120.00374 * 2 1 3 26 26 C 1.52998 * 117.50063 * 122.15722 * 25 2 1 27 27 C 1.53009 * 117.49941 * 53.49765 * 25 2 1 28 28 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46839 * 299.99440 * 1 2 3 30 30 H 1.08998 * 109.47822 * 59.99600 * 1 2 3 31 31 H 1.08997 * 109.46592 * 60.00570 * 3 2 1 32 32 H 1.09001 * 109.46654 * 179.97438 * 3 2 1 33 33 H 0.96997 * 119.99797 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00488 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00485 * 354.05254 * 13 2 1 36 36 H 1.08001 * 120.38295 * 0.02627 * 17 16 14 37 37 H 1.08000 * 120.72545 * 180.20339 * 18 17 16 38 38 H 1.07997 * 120.37708 * 179.76988 * 19 18 17 39 39 H 0.96995 * 119.99889 * 0.02562 * 22 21 20 40 40 H 0.97000 * 120.00045 * 179.97438 * 22 21 20 41 41 H 1.09004 * 115.55317 * 267.82929 * 25 2 1 42 42 H 1.09000 * 117.49790 * 0.02562 * 26 25 2 43 43 H 1.08999 * 117.50145 * 145.02005 * 26 25 2 44 44 H 1.08999 * 117.49883 * 214.97964 * 27 25 2 45 45 H 1.08992 * 117.49686 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1332 -1.1961 5 6 1.8827 3.4441 -1.4130 6 1 2.5036 3.9689 -0.7021 7 6 1.4203 4.0984 -2.5466 8 7 0.6640 3.4587 -3.4132 9 14 1.8716 5.8868 -2.8421 10 1 3.1346 5.9566 -3.6200 11 1 0.7841 6.5525 -3.6032 12 1 2.0549 6.5731 -1.5380 13 7 2.0182 -0.6905 -1.1963 14 6 3.3374 -0.7101 -1.4718 15 8 4.1132 -0.0880 -0.7735 16 6 3.8412 -1.4855 -2.6303 17 6 5.2078 -1.4913 -2.9159 18 6 5.6699 -2.2225 -3.9982 19 6 4.7514 -2.9179 -4.7687 20 6 3.3984 -2.8651 -4.4300 21 6 2.4081 -3.6049 -5.2480 22 7 1.0999 -3.5583 -4.9276 23 8 2.7760 -4.2533 -6.2075 24 7 2.9901 -2.1606 -3.3863 25 6 2.0400 -0.7213 1.2491 26 6 2.9565 -1.9289 1.0428 27 6 1.5144 -2.1337 1.5134 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.6766 1.9562 0.8900 32 1 3.1299 1.4425 0.0005 33 1 0.9941 1.6617 -1.8347 34 1 0.3413 3.9157 -4.2055 35 1 1.3922 -1.1337 -1.7900 36 1 5.8974 -0.9353 -2.2981 37 1 6.7225 -2.2465 -4.2390 38 1 5.0789 -3.4943 -5.6212 39 1 0.8063 -3.0404 -4.1618 40 1 0.4518 -4.0421 -5.4631 41 1 2.2319 -0.0857 2.1136 42 1 3.1965 -2.2092 0.0172 43 1 3.7511 -2.0880 1.7718 44 1 1.3608 -2.4274 2.5518 45 1 0.8056 -2.5491 0.7972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269651663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:44 Heat of formation + Delta-G solvation = 16.321169 kcal Electronic energy + Delta-G solvation = -29349.281313 eV Core-core repulsion = 25368.565459 eV Total energy + Delta-G solvation = -3980.715854 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05503 -40.07637 -38.82749 -37.09629 -34.96156 -34.09278 -33.46903 -32.64752 -31.78993 -30.99409 -29.49415 -26.06947 -25.07939 -24.78120 -23.67369 -22.15211 -21.74800 -21.30245 -20.59205 -19.03186 -18.50398 -17.59091 -17.26975 -17.07077 -16.18530 -16.02087 -15.57009 -15.30476 -15.21606 -14.69074 -14.45041 -14.31288 -13.97572 -13.84056 -13.44981 -13.29823 -13.19405 -12.85689 -12.30088 -12.15772 -12.07254 -11.89960 -11.35842 -11.10842 -10.90556 -10.85166 -10.79380 -10.72714 -10.23644 -10.21312 -10.09175 -10.00677 -9.88745 -9.84679 -9.64167 -9.38994 -9.36683 -8.72640 -8.60723 -6.79248 -5.70747 -2.96374 0.35325 0.74766 2.39462 3.09239 3.12056 3.29211 3.47080 3.52446 3.53676 3.84102 3.90050 4.00154 4.62230 4.62759 4.66251 4.76003 4.79672 4.83866 5.07755 5.11953 5.27809 5.30900 5.43028 5.53573 5.65399 5.68694 5.71940 5.75030 5.85998 5.96132 6.04025 6.14530 6.23575 6.25375 6.29725 6.35902 6.54128 6.60376 6.64606 6.89366 7.05242 7.18305 7.38561 7.77503 7.88912 8.01750 8.48851 8.52159 9.60279 10.18984 10.54335 11.52508 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008892 B = 0.004503 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.163882 B = 6216.749372 C = 7648.166232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.198 3.802 3 C 0.138 3.862 4 N -0.725 5.725 5 C -0.227 4.227 6 H 0.068 0.932 7 C -0.017 4.017 8 N -0.936 5.936 9 Si 0.904 3.096 10 H -0.292 1.292 11 H -0.293 1.293 12 H -0.283 1.283 13 N -0.694 5.694 14 C 0.580 3.420 15 O -0.511 6.511 16 C 0.090 3.910 17 C -0.088 4.088 18 C -0.087 4.087 19 C -0.095 4.095 20 C 0.070 3.930 21 C 0.583 3.417 22 N -0.832 5.832 23 O -0.540 6.540 24 N -0.431 5.431 25 C -0.144 4.144 26 C -0.166 4.166 27 C -0.181 4.181 28 H 0.053 0.947 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.021 0.979 32 H 0.059 0.941 33 H 0.381 0.619 34 H 0.252 0.748 35 H 0.403 0.597 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.413 0.587 40 H 0.406 0.594 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.089 0.911 45 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.416 -17.483 3.447 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.112 3.888 3 C 0.010 3.990 4 N -0.370 5.370 5 C -0.359 4.359 6 H 0.086 0.914 7 C -0.212 4.212 8 N -0.586 5.586 9 Si 0.736 3.264 10 H -0.220 1.220 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.344 5.344 14 C 0.364 3.636 15 O -0.385 6.385 16 C -0.052 4.052 17 C -0.109 4.109 18 C -0.113 4.113 19 C -0.116 4.116 20 C -0.071 4.071 21 C 0.366 3.634 22 N -0.395 5.395 23 O -0.416 6.416 24 N -0.146 5.146 25 C -0.163 4.163 26 C -0.203 4.203 27 C -0.218 4.218 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.215 0.785 34 H 0.062 0.938 35 H 0.239 0.761 36 H 0.173 0.827 37 H 0.168 0.832 38 H 0.169 0.831 39 H 0.244 0.756 40 H 0.237 0.763 41 H 0.128 0.872 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.521 -17.193 3.641 17.924 hybrid contribution 0.210 0.824 -0.868 1.215 sum 3.731 -16.369 2.773 17.016 Atomic orbital electron populations 1.21984 0.92940 1.01397 1.04168 1.20153 0.93914 0.92781 0.81963 1.21207 0.99395 0.87481 0.90947 1.42240 1.61187 1.10463 1.23104 1.19223 1.24827 0.87615 1.04215 0.91373 1.24665 1.00878 0.98108 0.97529 1.69641 1.39860 1.36010 1.13106 0.86222 0.77348 0.85232 0.77631 1.21956 1.21927 1.20830 1.45767 1.06924 1.55193 1.26550 1.17478 0.83185 0.80256 0.82711 1.90762 1.56366 1.41920 1.49465 1.21415 0.90833 0.96941 0.95972 1.22399 0.96080 0.95920 0.96487 1.21665 1.00918 0.94922 0.93772 1.22278 0.92516 0.97234 0.99571 1.21000 0.93038 0.98457 0.94565 1.17800 0.82748 0.79734 0.83109 1.43619 1.07541 1.53574 1.34773 1.90822 1.79947 1.42585 1.28285 1.67357 1.38995 1.04708 1.03530 1.22590 1.03950 0.90246 0.99535 1.22921 0.92971 1.02447 1.01972 1.22965 0.97388 0.99867 1.01582 0.92829 0.90905 0.90651 0.96118 0.92357 0.78460 0.93778 0.76146 0.82679 0.83234 0.83060 0.75633 0.76333 0.87184 0.89257 0.89414 0.89273 0.89049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.18 37.16 0.30 -1.79 16 2 C 0.20 3.11 0.55 -131.82 -0.07 3.04 16 3 C 0.14 2.85 4.81 -4.04 -0.02 2.83 16 4 N -0.73 -18.15 5.17 -59.91 -0.31 -18.46 16 5 C -0.23 -6.45 9.99 -15.06 -0.15 -6.60 16 6 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 7 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 8 N -0.94 -28.23 13.06 55.49 0.72 -27.50 16 9 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 10 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 11 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 13 N -0.69 -10.57 4.16 -48.42 -0.20 -10.77 16 14 C 0.58 9.61 4.85 -12.15 -0.06 9.55 16 15 O -0.51 -9.75 12.65 5.36 0.07 -9.69 16 16 C 0.09 1.30 6.75 -83.02 -0.56 0.74 16 17 C -0.09 -1.10 9.63 -38.95 -0.38 -1.47 16 18 C -0.09 -0.86 10.16 -39.34 -0.40 -1.26 16 19 C -0.10 -1.04 9.63 -38.95 -0.38 -1.42 16 20 C 0.07 0.88 6.75 -83.03 -0.56 0.32 16 21 C 0.58 7.26 8.09 -12.15 -0.10 7.16 16 22 N -0.83 -7.68 8.86 30.62 0.27 -7.41 16 23 O -0.54 -8.07 17.16 5.36 0.09 -7.98 16 24 N -0.43 -5.69 8.72 -6.38 -0.06 -5.75 16 25 C -0.14 -1.97 4.89 -90.62 -0.44 -2.41 16 26 C -0.17 -2.14 8.62 -26.69 -0.23 -2.37 16 27 C -0.18 -2.02 9.68 -26.69 -0.26 -2.28 16 28 H 0.05 0.61 6.91 -51.93 -0.36 0.25 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.25 6.86 -51.93 -0.36 0.89 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 1.34 5.63 -51.93 -0.29 1.05 16 33 H 0.38 9.83 6.35 -40.82 -0.26 9.57 16 34 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.40 5.52 7.82 -40.82 -0.32 5.20 16 36 H 0.16 1.84 7.64 -52.49 -0.40 1.44 16 37 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 38 H 0.15 1.44 7.64 -52.49 -0.40 1.04 16 39 H 0.41 3.44 8.16 -40.82 -0.33 3.10 16 40 H 0.41 2.94 8.93 -40.82 -0.36 2.58 16 41 H 0.11 1.51 8.06 -51.93 -0.42 1.09 16 42 H 0.09 1.24 5.21 -51.93 -0.27 0.97 16 43 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 0.96 7.20 -51.93 -0.37 0.59 16 LS Contribution 371.90 15.07 5.60 5.60 Total: -1.00 -34.59 371.90 -8.03 -42.63 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: -5.81 Total: 18.00 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.39 Total: 3.48 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: 0.43 Total: -69.89 kcal Atomic # 8 Polarization: -17.82 SS G_CDS: 0.16 Total: -17.66 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.59 -8.03 -42.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269651663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.947 kcal (2) G-P(sol) polarization free energy of solvation -34.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds