Wall clock time and date at job start Tue Mar 31 2020 16:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46843 * 2 1 4 4 N 1.46496 * 109.47323 * 300.00439 * 3 2 1 5 5 C 1.36936 * 119.99913 * 180.02562 * 4 3 2 6 6 H 1.07994 * 120.00215 * 359.97438 * 5 4 3 7 7 C 1.38817 * 119.99886 * 179.97438 * 5 4 3 8 8 N 1.31614 * 120.00270 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99838 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47126 * 89.99889 * 9 7 5 11 11 H 1.48493 * 109.47381 * 209.99822 * 9 7 5 12 12 H 1.48499 * 109.47394 * 330.00413 * 9 7 5 13 13 N 1.46502 * 109.46657 * 240.00630 * 2 1 3 14 14 C 1.34777 * 119.99649 * 174.06112 * 13 2 1 15 15 O 1.21512 * 120.00050 * 355.56388 * 14 13 2 16 16 C 1.48232 * 120.00127 * 175.83994 * 14 13 2 17 17 C 1.39619 * 119.65402 * 179.44626 * 16 14 13 18 18 C 1.38545 * 119.24281 * 179.79277 * 17 16 14 19 19 C 1.38592 * 118.55442 * 0.47489 * 18 17 16 20 20 C 1.39579 * 119.24572 * 359.75134 * 19 18 17 21 21 C 1.48228 * 119.65625 * 179.97438 * 20 19 18 22 22 N 1.34776 * 120.00216 * 180.02562 * 21 20 19 23 23 O 1.21506 * 119.99459 * 0.02562 * 21 20 19 24 24 N 1.32346 * 119.64976 * 359.72160 * 16 14 13 25 25 C 1.52989 * 109.47406 * 120.00374 * 2 1 3 26 26 C 1.52998 * 117.50063 * 122.15722 * 25 2 1 27 27 C 1.53009 * 117.49941 * 53.49765 * 25 2 1 28 28 H 1.09002 * 109.46974 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46839 * 299.99440 * 1 2 3 30 30 H 1.08998 * 109.47822 * 59.99600 * 1 2 3 31 31 H 1.08997 * 109.46592 * 60.00570 * 3 2 1 32 32 H 1.09001 * 109.46654 * 179.97438 * 3 2 1 33 33 H 0.96997 * 119.99797 * 359.97438 * 4 3 2 34 34 H 0.96995 * 120.00488 * 180.02562 * 8 7 5 35 35 H 0.96997 * 120.00485 * 354.05254 * 13 2 1 36 36 H 1.08001 * 120.38295 * 0.02627 * 17 16 14 37 37 H 1.08000 * 120.72545 * 180.20339 * 18 17 16 38 38 H 1.07997 * 120.37708 * 179.76988 * 19 18 17 39 39 H 0.96995 * 119.99889 * 0.02562 * 22 21 20 40 40 H 0.97000 * 120.00045 * 179.97438 * 22 21 20 41 41 H 1.09004 * 115.55317 * 267.82929 * 25 2 1 42 42 H 1.09000 * 117.49790 * 0.02562 * 26 25 2 43 43 H 1.08999 * 117.50145 * 145.02005 * 26 25 2 44 44 H 1.08999 * 117.49883 * 214.97964 * 27 25 2 45 45 H 1.08992 * 117.49686 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5515 2.1332 -1.1961 5 6 1.8827 3.4441 -1.4130 6 1 2.5036 3.9689 -0.7021 7 6 1.4203 4.0984 -2.5466 8 7 0.6640 3.4587 -3.4132 9 14 1.8716 5.8868 -2.8421 10 1 3.1346 5.9566 -3.6200 11 1 0.7841 6.5525 -3.6032 12 1 2.0549 6.5731 -1.5380 13 7 2.0182 -0.6905 -1.1963 14 6 3.3374 -0.7101 -1.4718 15 8 4.1132 -0.0880 -0.7735 16 6 3.8412 -1.4855 -2.6303 17 6 5.2078 -1.4913 -2.9159 18 6 5.6699 -2.2225 -3.9982 19 6 4.7514 -2.9179 -4.7687 20 6 3.3984 -2.8651 -4.4300 21 6 2.4081 -3.6049 -5.2480 22 7 1.0999 -3.5583 -4.9276 23 8 2.7760 -4.2533 -6.2075 24 7 2.9901 -2.1606 -3.3863 25 6 2.0400 -0.7213 1.2491 26 6 2.9565 -1.9289 1.0428 27 6 1.5144 -2.1337 1.5134 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.6766 1.9562 0.8900 32 1 3.1299 1.4425 0.0005 33 1 0.9941 1.6617 -1.8347 34 1 0.3413 3.9157 -4.2055 35 1 1.3922 -1.1337 -1.7900 36 1 5.8974 -0.9353 -2.2981 37 1 6.7225 -2.2465 -4.2390 38 1 5.0789 -3.4943 -5.6212 39 1 0.8063 -3.0404 -4.1618 40 1 0.4518 -4.0421 -5.4631 41 1 2.2319 -0.0857 2.1136 42 1 3.1965 -2.2092 0.0172 43 1 3.7511 -2.0880 1.7718 44 1 1.3608 -2.4274 2.5518 45 1 0.8056 -2.5491 0.7972 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269651663.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:43 Heat of formation + Delta-G solvation = -10.529370 kcal Electronic energy + Delta-G solvation = -29350.445640 eV Core-core repulsion = 25368.565459 eV Total energy + Delta-G solvation = -3981.880181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 332.164 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.12493 -41.20039 -39.83080 -38.31715 -36.56419 -35.09506 -34.85146 -33.81303 -33.02992 -32.40567 -31.03752 -27.65025 -26.11655 -25.89241 -25.35617 -23.12746 -23.00535 -22.56657 -21.65403 -20.32176 -19.51880 -19.22957 -18.62947 -17.99239 -17.26913 -17.08090 -16.92815 -16.49963 -16.30578 -16.10984 -15.79940 -15.48456 -15.35343 -15.03655 -14.94946 -14.62265 -14.37355 -14.24885 -13.52707 -13.49294 -13.29416 -13.16608 -12.98482 -12.81299 -12.41411 -12.26641 -12.11857 -12.00679 -11.91326 -11.75675 -11.27646 -11.15108 -11.11056 -10.93444 -10.88675 -10.77488 -10.46325 -10.36930 -9.91397 -8.88426 -7.93110 -5.18046 -0.61756 -0.19259 1.41142 1.44749 1.46001 1.54383 1.95679 2.08072 2.29006 2.56066 2.81301 2.89069 2.99893 3.40559 3.65806 3.67304 3.80568 3.85902 3.91146 4.01360 4.02112 4.20076 4.32553 4.38011 4.39317 4.41776 4.58389 4.81138 4.85559 4.91186 4.95390 4.97819 4.99016 5.09494 5.23234 5.31324 5.35439 5.35865 5.38885 5.49952 5.71942 5.75491 6.14420 6.29699 6.40673 6.69223 7.16409 7.28510 7.37150 8.13664 8.40526 9.29933 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.008892 B = 0.004503 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3148.163882 B = 6216.749372 C = 7648.166232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.205 3.795 3 C 0.138 3.862 4 N -0.729 5.729 5 C -0.237 4.237 6 H 0.064 0.936 7 C -0.071 4.071 8 N -0.964 5.964 9 Si 0.965 3.035 10 H -0.292 1.292 11 H -0.292 1.292 12 H -0.272 1.272 13 N -0.688 5.688 14 C 0.575 3.425 15 O -0.545 6.545 16 C 0.063 3.937 17 C -0.096 4.096 18 C -0.070 4.070 19 C -0.091 4.091 20 C 0.054 3.946 21 C 0.581 3.419 22 N -0.816 5.816 23 O -0.569 6.569 24 N -0.431 5.431 25 C -0.161 4.161 26 C -0.173 4.173 27 C -0.149 4.149 28 H 0.088 0.912 29 H 0.076 0.924 30 H 0.048 0.952 31 H 0.018 0.982 32 H 0.036 0.964 33 H 0.376 0.624 34 H 0.249 0.751 35 H 0.411 0.589 36 H 0.156 0.844 37 H 0.191 0.809 38 H 0.169 0.831 39 H 0.419 0.581 40 H 0.416 0.584 41 H 0.107 0.893 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.110 0.890 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.529 -18.752 3.649 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.119 3.881 3 C 0.011 3.989 4 N -0.372 5.372 5 C -0.369 4.369 6 H 0.082 0.918 7 C -0.263 4.263 8 N -0.616 5.616 9 Si 0.795 3.205 10 H -0.220 1.220 11 H -0.219 1.219 12 H -0.197 1.197 13 N -0.338 5.338 14 C 0.361 3.639 15 O -0.422 6.422 16 C -0.077 4.077 17 C -0.117 4.117 18 C -0.095 4.095 19 C -0.112 4.112 20 C -0.087 4.087 21 C 0.364 3.636 22 N -0.379 5.379 23 O -0.448 6.448 24 N -0.146 5.146 25 C -0.181 4.181 26 C -0.210 4.210 27 C -0.186 4.186 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.054 0.946 33 H 0.209 0.791 34 H 0.058 0.942 35 H 0.247 0.753 36 H 0.174 0.826 37 H 0.208 0.792 38 H 0.186 0.814 39 H 0.251 0.749 40 H 0.249 0.751 41 H 0.125 0.875 42 H 0.097 0.903 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.597 -18.477 3.884 19.220 hybrid contribution 0.212 1.184 -0.911 1.509 sum 3.809 -17.293 2.972 17.955 Atomic orbital electron populations 1.21924 0.91551 1.03275 1.02962 1.19989 0.94799 0.90013 0.83329 1.21257 0.98014 0.90631 0.89039 1.42318 1.60981 1.09724 1.24210 1.19536 1.24205 0.89116 1.04079 0.91789 1.25385 1.01413 1.01949 0.97562 1.69779 1.41040 1.37340 1.13417 0.85252 0.76718 0.80831 0.77675 1.22002 1.21885 1.19727 1.45735 1.06868 1.54719 1.26528 1.17840 0.83194 0.79906 0.82970 1.90732 1.57121 1.43538 1.50822 1.21244 0.91934 0.98327 0.96238 1.22561 0.95308 0.96396 0.97416 1.22061 1.02689 0.92850 0.91911 1.22584 0.91991 0.96778 0.99832 1.21223 0.94103 0.98743 0.94599 1.17846 0.83500 0.79492 0.82768 1.43532 1.06855 1.52826 1.34658 1.90806 1.80501 1.44016 1.29503 1.67245 1.38914 1.04751 1.03690 1.22457 1.05970 0.91286 0.98352 1.22911 0.94341 1.02085 1.01658 1.23061 0.95948 0.96522 1.03049 0.89359 0.90557 0.93332 0.96392 0.94622 0.79081 0.94203 0.75292 0.82626 0.79222 0.81360 0.74949 0.75083 0.87531 0.90315 0.89065 0.87126 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 8.18 71.98 0.59 -3.25 16 2 C 0.20 6.43 0.55 3.60 0.00 6.43 16 3 C 0.14 5.86 4.81 86.38 0.42 6.28 16 4 N -0.73 -37.40 5.17 -343.46 -1.78 -39.17 16 5 C -0.24 -13.70 9.99 84.03 0.84 -12.86 16 6 H 0.06 3.67 7.83 -2.91 -0.02 3.65 16 7 C -0.07 -4.13 5.50 84.86 0.47 -3.67 16 8 N -0.96 -58.90 13.06 21.65 0.28 -58.62 16 9 Si 0.97 47.41 29.55 68.60 2.03 49.44 16 10 H -0.29 -14.30 7.11 99.48 0.71 -13.60 16 11 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 12 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 13 N -0.69 -21.06 4.16 -425.40 -1.77 -22.83 16 14 C 0.58 19.45 4.85 86.90 0.42 19.88 16 15 O -0.54 -21.55 12.65 -3.75 -0.05 -21.59 16 16 C 0.06 1.84 6.75 42.06 0.28 2.12 16 17 C -0.10 -2.32 9.63 22.68 0.22 -2.11 16 18 C -0.07 -1.23 10.16 22.43 0.23 -1.00 16 19 C -0.09 -1.83 9.63 22.68 0.22 -1.61 16 20 C 0.05 1.31 6.75 42.04 0.28 1.60 16 21 C 0.58 13.90 8.09 86.90 0.70 14.60 16 22 N -0.82 -14.14 8.86 -175.34 -1.55 -15.70 16 23 O -0.57 -16.50 17.16 -3.73 -0.06 -16.56 16 24 N -0.43 -11.20 8.72 -174.09 -1.52 -12.71 16 25 C -0.16 -4.27 4.89 -10.79 -0.05 -4.32 16 26 C -0.17 -4.28 8.62 30.62 0.26 -4.01 16 27 C -0.15 -2.91 9.68 30.62 0.30 -2.61 16 28 H 0.09 1.79 6.91 -2.39 -0.02 1.77 16 29 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 30 H 0.05 1.61 6.86 -2.39 -0.02 1.59 16 31 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.04 1.71 5.63 -2.39 -0.01 1.70 16 33 H 0.38 19.90 6.35 -92.71 -0.59 19.31 16 34 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.41 11.15 7.82 -92.71 -0.72 10.43 16 36 H 0.16 3.69 7.64 -2.91 -0.02 3.66 16 37 H 0.19 1.75 8.06 -2.91 -0.02 1.72 16 38 H 0.17 2.80 7.64 -2.91 -0.02 2.78 16 39 H 0.42 6.50 8.16 -92.71 -0.76 5.74 16 40 H 0.42 5.50 8.93 -92.71 -0.83 4.67 16 41 H 0.11 2.88 8.06 -2.38 -0.02 2.86 16 42 H 0.08 2.14 5.21 -2.39 -0.01 2.13 16 43 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.10 1.80 7.20 -2.39 -0.02 1.78 16 Total: -1.00 -75.93 371.90 -1.05 -76.98 By element: Atomic # 1 Polarization: 47.10 SS G_CDS: -1.81 Total: 45.29 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.18 Total: 15.48 kcal Atomic # 7 Polarization: -142.70 SS G_CDS: -6.34 Total: -149.03 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.11 Total: -38.16 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -75.93 -1.05 -76.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269651663.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.454 kcal (2) G-P(sol) polarization free energy of solvation -75.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds