Wall clock time and date at job start Tue Mar 31 2020 16:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47385 * 2 1 4 4 N 1.46493 * 109.46896 * 120.00272 * 2 1 3 5 5 C 1.46501 * 120.00021 * 122.64663 * 4 2 1 6 6 C 1.53000 * 109.47035 * 89.99890 * 5 4 2 7 7 N 1.46501 * 109.47035 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00268 * 90.00110 * 7 6 5 9 9 C 1.36943 * 119.99752 * 269.99897 * 7 6 5 10 10 H 1.07992 * 120.00432 * 21.42676 * 9 7 6 11 11 C 1.38817 * 119.99804 * 201.43098 * 9 7 6 12 12 N 1.31628 * 119.99901 * 11.13104 * 11 9 7 13 13 Si 1.86796 * 119.99972 * 191.13654 * 11 9 7 14 14 H 1.48498 * 109.47312 * 89.99612 * 13 11 9 15 15 H 1.48501 * 109.47249 * 209.99733 * 13 11 9 16 16 H 1.48498 * 109.46962 * 329.99594 * 13 11 9 17 17 C 1.34773 * 119.99947 * 302.64114 * 4 2 1 18 18 O 1.21278 * 120.00247 * 354.66372 * 17 4 2 19 19 C 1.50701 * 120.00219 * 174.65611 * 17 4 2 20 20 H 1.09010 * 110.28376 * 328.79025 * 19 17 4 21 21 C 1.54158 * 110.32156 * 91.00809 * 19 17 4 22 22 C 1.53876 * 108.70792 * 146.81086 * 21 19 17 23 23 C 1.55050 * 106.62574 * 312.82554 * 22 21 19 24 24 S 1.82924 * 110.32275 * 206.67559 * 19 17 4 25 25 O 1.42096 * 109.34894 * 352.37245 * 24 19 17 26 26 O 1.42098 * 109.35431 * 125.57406 * 24 19 17 27 27 H 1.09001 * 109.46786 * 58.48655 * 1 2 3 28 28 H 1.09001 * 109.46695 * 298.49290 * 1 2 3 29 29 H 1.08998 * 109.47142 * 178.48756 * 1 2 3 30 30 H 1.09001 * 109.46733 * 239.99709 * 2 1 3 31 31 H 1.08996 * 109.47374 * 61.99027 * 3 2 1 32 32 H 1.08995 * 109.47025 * 181.99452 * 3 2 1 33 33 H 1.09004 * 109.46961 * 301.99217 * 3 2 1 34 34 H 1.09001 * 109.46990 * 209.99367 * 5 4 2 35 35 H 1.08995 * 109.47707 * 329.99873 * 5 4 2 36 36 H 1.09004 * 109.47296 * 299.99572 * 6 5 4 37 37 H 1.09003 * 109.47314 * 59.99961 * 6 5 4 38 38 H 1.08997 * 109.47272 * 93.63217 * 8 7 6 39 39 H 1.09006 * 109.47374 * 213.63196 * 8 7 6 40 40 H 1.09004 * 109.46932 * 333.63362 * 8 7 6 41 41 H 0.96997 * 119.99152 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.65451 * 266.66801 * 21 19 17 43 43 H 1.09008 * 109.64357 * 26.96540 * 21 19 17 44 44 H 1.08996 * 110.02994 * 193.52983 * 22 21 19 45 45 H 1.09004 * 110.02814 * 72.11473 * 22 21 19 46 46 H 1.09003 * 110.78697 * 284.16580 * 23 22 21 47 47 H 1.09000 * 110.79211 * 160.69831 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.9077 -1.8471 1.0624 6 6 4.3625 -1.3733 1.0544 7 7 5.2520 -2.5298 0.9214 8 6 5.6533 -2.9961 -0.4081 9 6 5.7082 -3.1748 2.0399 10 1 5.1741 -3.0800 2.9736 11 6 6.8575 -3.9506 1.9734 12 7 7.6283 -3.8950 0.9079 13 14 7.3099 -5.0735 3.3959 14 1 6.6952 -6.4091 3.1873 15 1 8.7866 -5.2138 3.4656 16 1 6.8076 -4.4904 4.6659 17 6 1.6493 -0.2621 2.4195 18 8 0.9931 0.7513 2.5347 19 6 2.0520 -1.0422 3.6443 20 1 2.1188 -2.1049 3.4105 21 6 3.3987 -0.5263 4.1889 22 6 3.3958 -0.6618 5.7217 23 6 2.0434 -0.0860 6.2154 24 16 0.8531 -0.7637 4.9975 25 8 -0.0606 0.2550 4.6148 26 8 0.3668 -2.0159 5.4609 27 1 -0.3633 0.5372 -0.8761 28 1 -0.3633 0.4903 0.9032 29 1 -0.3633 -1.0273 -0.0271 30 1 1.8933 -0.5139 -0.8900 31 1 1.7063 1.9459 0.9072 32 1 3.1295 1.4426 -0.0358 33 1 1.6479 1.9665 -0.8716 34 1 2.7510 -2.5248 1.9016 35 1 2.6899 -2.3672 0.1297 36 1 4.5193 -0.6955 0.2153 37 1 4.5804 -0.8532 1.9872 38 1 6.6024 -2.5361 -0.6833 39 1 5.7656 -4.0803 -0.3944 40 1 4.8907 -2.7189 -1.1359 41 1 8.4311 -4.4374 0.8614 42 1 4.2138 -1.1167 3.7704 43 1 3.5283 0.5206 3.9139 44 1 4.2218 -0.0929 6.1484 45 1 3.4799 -1.7113 6.0038 46 1 2.0520 1.0035 6.1829 47 1 1.8146 -0.4425 7.2197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278929967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:55 Heat of formation + Delta-G solvation = -71.066609 kcal Electronic energy + Delta-G solvation = -29096.913884 eV Core-core repulsion = 25215.559811 eV Total energy + Delta-G solvation = -3881.354073 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.31537 -37.08554 -36.54580 -36.36299 -35.87356 -35.18178 -32.97461 -31.27430 -29.98619 -27.92885 -27.04520 -25.97863 -25.76513 -23.67265 -22.45685 -21.69907 -20.62436 -19.31010 -18.37545 -17.37669 -17.00912 -16.68896 -16.37749 -15.68933 -15.37326 -15.12610 -14.86017 -14.40807 -14.14726 -13.98668 -13.71475 -13.63299 -13.32663 -13.15204 -12.81338 -12.69065 -12.57274 -12.18975 -12.10003 -12.00484 -11.95176 -11.79206 -11.73384 -11.43879 -11.26279 -11.12966 -11.03455 -10.98847 -10.88622 -10.76459 -10.56892 -10.39885 -10.27019 -10.00627 -9.83178 -9.42613 -8.78745 -8.47895 -6.88721 -5.84592 -3.31959 -0.03141 2.45234 2.60080 2.99373 3.29212 3.35304 3.37642 3.58262 3.93457 4.25422 4.36431 4.42375 4.56350 4.60695 4.88269 4.92042 5.07266 5.18663 5.26427 5.31007 5.33945 5.39980 5.44782 5.56401 5.69586 5.73470 5.77129 5.83130 5.88837 5.92291 5.93742 6.02114 6.08200 6.28528 6.34687 6.43041 6.60912 6.69340 6.85028 7.29543 7.48383 7.60291 7.69381 8.20241 8.26408 9.10404 9.73330 10.21349 11.20178 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.005151 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.775576 B = 5434.461958 C = 7343.072439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.145 3.855 3 C -0.170 4.170 4 N -0.594 5.594 5 C 0.078 3.922 6 C 0.136 3.864 7 N -0.599 5.599 8 C 0.163 3.837 9 C -0.261 4.261 10 H 0.070 0.930 11 C 0.005 3.995 12 N -0.906 5.906 13 Si 0.903 3.097 14 H -0.287 1.287 15 H -0.291 1.291 16 H -0.278 1.278 17 C 0.540 3.460 18 O -0.508 6.508 19 C -0.596 4.596 20 H 0.162 0.838 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.589 4.589 24 S 2.401 3.599 25 O -0.901 6.901 26 O -0.938 6.938 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.039 0.961 37 H 0.053 0.947 38 H 0.028 0.972 39 H 0.048 0.952 40 H -0.005 1.005 41 H 0.253 0.747 42 H 0.116 0.884 43 H 0.087 0.913 44 H 0.101 0.899 45 H 0.090 0.910 46 H 0.139 0.861 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.844 7.786 3.878 13.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.042 3.958 3 C -0.227 4.227 4 N -0.327 5.327 5 C -0.047 4.047 6 C 0.007 3.993 7 N -0.323 5.323 8 C 0.019 3.981 9 C -0.390 4.390 10 H 0.087 0.913 11 C -0.194 4.194 12 N -0.550 5.550 13 Si 0.733 3.267 14 H -0.214 1.214 15 H -0.217 1.217 16 H -0.204 1.204 17 C 0.324 3.676 18 O -0.384 6.384 19 C -0.706 4.706 20 H 0.179 0.821 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.719 4.719 24 S 2.581 3.419 25 O -0.898 6.898 26 O -0.935 6.935 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.071 0.929 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.013 0.987 41 H 0.064 0.936 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.119 0.881 45 H 0.109 0.891 46 H 0.157 0.843 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.977 8.050 3.900 14.160 hybrid contribution 1.416 -0.890 0.539 1.757 sum -9.561 7.161 4.438 12.743 Atomic orbital electron populations 1.22244 0.95033 1.02069 1.03757 1.21030 0.94324 0.93543 0.86859 1.22221 1.01193 0.95938 1.03395 1.48078 1.47737 1.31998 1.04886 1.22840 0.92161 0.86848 1.02877 1.21169 0.88128 0.90057 0.99940 1.43859 1.53883 1.31091 1.03432 1.20823 0.94906 0.99227 0.83158 1.19151 1.05288 1.24764 0.89814 0.91260 1.25015 0.95832 1.01042 0.97498 1.70076 1.14428 1.41898 1.28633 0.86285 0.77506 0.81084 0.81815 1.21397 1.21708 1.20380 1.19057 0.80127 0.84963 0.83419 1.90827 1.38572 1.23405 1.85606 1.30791 1.16032 1.10938 1.12809 0.82093 1.22065 0.94367 1.03856 0.94233 1.22218 0.95921 1.03085 0.94377 1.30662 1.13361 1.12343 1.15488 1.09003 0.77812 0.76260 0.78829 1.93676 1.58141 1.57474 1.80535 1.93619 1.77634 1.42848 1.79355 0.91848 0.90040 0.92883 0.89541 0.90240 0.92528 0.92152 0.90257 0.90803 0.94312 0.92846 0.95410 0.93311 0.98686 0.93620 0.86585 0.89452 0.88052 0.89101 0.84308 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 9.10 37.16 0.34 -1.80 16 2 C 0.15 1.86 3.28 -67.93 -0.22 1.63 16 3 C -0.17 -2.11 9.18 37.16 0.34 -1.77 16 4 N -0.59 -8.39 2.42 -166.11 -0.40 -8.79 16 5 C 0.08 1.18 5.60 -4.04 -0.02 1.16 16 6 C 0.14 2.42 5.98 -4.04 -0.02 2.40 16 7 N -0.60 -13.44 2.93 -181.11 -0.53 -13.97 16 8 C 0.16 3.72 8.96 59.84 0.54 4.26 16 9 C -0.26 -6.39 9.68 -15.05 -0.15 -6.53 16 10 H 0.07 1.59 7.57 -52.49 -0.40 1.19 16 11 C 0.00 0.13 5.13 -17.43 -0.09 0.04 16 12 N -0.91 -24.88 10.52 55.49 0.58 -24.29 16 13 Si 0.90 20.38 29.57 -169.99 -5.03 15.36 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 17 C 0.54 7.98 6.06 -10.99 -0.07 7.92 16 18 O -0.51 -8.54 10.66 -17.79 -0.19 -8.73 16 19 C -0.60 -7.61 2.90 -27.28 -0.08 -7.69 16 20 H 0.16 1.94 6.07 -51.92 -0.32 1.63 16 21 C -0.11 -1.21 5.20 -25.67 -0.13 -1.34 16 22 C -0.12 -1.07 6.48 -25.19 -0.16 -1.24 16 23 C -0.59 -5.19 7.31 38.24 0.28 -4.91 16 24 S 2.40 30.61 5.91 -107.50 -0.64 29.97 16 25 O -0.90 -14.64 15.56 -66.90 -1.04 -15.68 16 26 O -0.94 -14.40 18.15 -57.71 -1.05 -15.45 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 1.19 6.12 -51.93 -0.32 0.87 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.09 1.02 7.78 -51.93 -0.40 0.61 16 31 H 0.08 1.13 6.14 -51.93 -0.32 0.81 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.21 5.76 -51.93 -0.30 0.91 16 35 H 0.07 1.11 7.90 -51.93 -0.41 0.70 16 36 H 0.04 0.68 8.07 -51.93 -0.42 0.26 16 37 H 0.05 0.93 5.42 -51.93 -0.28 0.65 16 38 H 0.03 0.69 7.48 -51.93 -0.39 0.30 16 39 H 0.05 1.21 7.08 -51.93 -0.37 0.84 16 40 H -0.01 -0.11 8.04 -51.93 -0.42 -0.52 16 41 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 42 H 0.12 1.50 6.18 -51.93 -0.32 1.18 16 43 H 0.09 0.95 7.85 -51.92 -0.41 0.54 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.14 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.14 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 372.81 15.07 5.62 5.62 Total: -1.00 -32.96 372.81 -9.70 -42.66 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: -7.58 Total: 1.18 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 0.55 Total: -7.88 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: -0.35 Total: -47.05 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -2.28 Total: -39.86 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.36 kcal Atomic # 16 Polarization: 30.61 SS G_CDS: -0.64 Total: 29.97 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.96 -9.70 -42.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278929967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.406 kcal (2) G-P(sol) polarization free energy of solvation -32.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds