Wall clock time and date at job start Tue Mar 31 2020 16:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47385 * 2 1 4 4 N 1.46493 * 109.46896 * 120.00272 * 2 1 3 5 5 C 1.46501 * 120.00021 * 122.64663 * 4 2 1 6 6 C 1.53000 * 109.47035 * 89.99890 * 5 4 2 7 7 N 1.46501 * 109.47035 * 179.97438 * 6 5 4 8 8 C 1.46496 * 120.00268 * 90.00110 * 7 6 5 9 9 C 1.36943 * 119.99752 * 269.99897 * 7 6 5 10 10 H 1.07992 * 120.00432 * 21.42676 * 9 7 6 11 11 C 1.38817 * 119.99804 * 201.43098 * 9 7 6 12 12 N 1.31628 * 119.99901 * 11.13104 * 11 9 7 13 13 Si 1.86796 * 119.99972 * 191.13654 * 11 9 7 14 14 H 1.48498 * 109.47312 * 89.99612 * 13 11 9 15 15 H 1.48501 * 109.47249 * 209.99733 * 13 11 9 16 16 H 1.48498 * 109.46962 * 329.99594 * 13 11 9 17 17 C 1.34773 * 119.99947 * 302.64114 * 4 2 1 18 18 O 1.21278 * 120.00247 * 354.66372 * 17 4 2 19 19 C 1.50701 * 120.00219 * 174.65611 * 17 4 2 20 20 H 1.09010 * 110.28376 * 328.79025 * 19 17 4 21 21 C 1.54158 * 110.32156 * 91.00809 * 19 17 4 22 22 C 1.53876 * 108.70792 * 146.81086 * 21 19 17 23 23 C 1.55050 * 106.62574 * 312.82554 * 22 21 19 24 24 S 1.82924 * 110.32275 * 206.67559 * 19 17 4 25 25 O 1.42096 * 109.34894 * 352.37245 * 24 19 17 26 26 O 1.42098 * 109.35431 * 125.57406 * 24 19 17 27 27 H 1.09001 * 109.46786 * 58.48655 * 1 2 3 28 28 H 1.09001 * 109.46695 * 298.49290 * 1 2 3 29 29 H 1.08998 * 109.47142 * 178.48756 * 1 2 3 30 30 H 1.09001 * 109.46733 * 239.99709 * 2 1 3 31 31 H 1.08996 * 109.47374 * 61.99027 * 3 2 1 32 32 H 1.08995 * 109.47025 * 181.99452 * 3 2 1 33 33 H 1.09004 * 109.46961 * 301.99217 * 3 2 1 34 34 H 1.09001 * 109.46990 * 209.99367 * 5 4 2 35 35 H 1.08995 * 109.47707 * 329.99873 * 5 4 2 36 36 H 1.09004 * 109.47296 * 299.99572 * 6 5 4 37 37 H 1.09003 * 109.47314 * 59.99961 * 6 5 4 38 38 H 1.08997 * 109.47272 * 93.63217 * 8 7 6 39 39 H 1.09006 * 109.47374 * 213.63196 * 8 7 6 40 40 H 1.09004 * 109.46932 * 333.63362 * 8 7 6 41 41 H 0.96997 * 119.99152 * 180.02562 * 12 11 9 42 42 H 1.09000 * 109.65451 * 266.66801 * 21 19 17 43 43 H 1.09008 * 109.64357 * 26.96540 * 21 19 17 44 44 H 1.08996 * 110.02994 * 193.52983 * 22 21 19 45 45 H 1.09004 * 110.02814 * 72.11473 * 22 21 19 46 46 H 1.09003 * 110.78697 * 284.16580 * 23 22 21 47 47 H 1.09000 * 110.79211 * 160.69831 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 2.9077 -1.8471 1.0624 6 6 4.3625 -1.3733 1.0544 7 7 5.2520 -2.5298 0.9214 8 6 5.6533 -2.9961 -0.4081 9 6 5.7082 -3.1748 2.0399 10 1 5.1741 -3.0800 2.9736 11 6 6.8575 -3.9506 1.9734 12 7 7.6283 -3.8950 0.9079 13 14 7.3099 -5.0735 3.3959 14 1 6.6952 -6.4091 3.1873 15 1 8.7866 -5.2138 3.4656 16 1 6.8076 -4.4904 4.6659 17 6 1.6493 -0.2621 2.4195 18 8 0.9931 0.7513 2.5347 19 6 2.0520 -1.0422 3.6443 20 1 2.1188 -2.1049 3.4105 21 6 3.3987 -0.5263 4.1889 22 6 3.3958 -0.6618 5.7217 23 6 2.0434 -0.0860 6.2154 24 16 0.8531 -0.7637 4.9975 25 8 -0.0606 0.2550 4.6148 26 8 0.3668 -2.0159 5.4609 27 1 -0.3633 0.5372 -0.8761 28 1 -0.3633 0.4903 0.9032 29 1 -0.3633 -1.0273 -0.0271 30 1 1.8933 -0.5139 -0.8900 31 1 1.7063 1.9459 0.9072 32 1 3.1295 1.4426 -0.0358 33 1 1.6479 1.9665 -0.8716 34 1 2.7510 -2.5248 1.9016 35 1 2.6899 -2.3672 0.1297 36 1 4.5193 -0.6955 0.2153 37 1 4.5804 -0.8532 1.9872 38 1 6.6024 -2.5361 -0.6833 39 1 5.7656 -4.0803 -0.3944 40 1 4.8907 -2.7189 -1.1359 41 1 8.4311 -4.4374 0.8614 42 1 4.2138 -1.1167 3.7704 43 1 3.5283 0.5206 3.9139 44 1 4.2218 -0.0929 6.1484 45 1 3.4799 -1.7113 6.0038 46 1 2.0520 1.0035 6.1829 47 1 1.8146 -0.4425 7.2197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278929967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:54 Heat of formation + Delta-G solvation = -92.323437 kcal Electronic energy + Delta-G solvation = -29097.835649 eV Core-core repulsion = 25215.559811 eV Total energy + Delta-G solvation = -3882.275838 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 332.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.45985 -38.23449 -37.84313 -37.39452 -37.01213 -36.50886 -34.22098 -32.93513 -30.96982 -29.37774 -28.05087 -27.85278 -26.66177 -25.18757 -23.52680 -22.68092 -22.15199 -20.36268 -19.43789 -18.72896 -18.38116 -17.96347 -17.36392 -16.80595 -16.72183 -16.34492 -16.20089 -15.57685 -15.35759 -15.11397 -15.00035 -14.83345 -14.60361 -14.41209 -14.10099 -14.02650 -13.58883 -13.23619 -13.16604 -13.09047 -13.05321 -12.96815 -12.89301 -12.78914 -12.69770 -12.64127 -12.39831 -12.18461 -12.09561 -12.01802 -11.91342 -11.90104 -11.75401 -11.36850 -11.10385 -10.62202 -10.56504 -9.79572 -8.71040 -7.77069 -5.25096 -0.99075 1.43345 1.51417 1.54080 1.55013 1.60700 1.89026 2.55187 2.63427 2.90586 3.36036 3.40015 3.41989 3.69667 3.78364 3.84996 3.91414 4.05920 4.11892 4.17643 4.22935 4.37236 4.52337 4.56300 4.65734 4.67300 4.75549 4.80027 4.87354 4.91317 4.95752 4.99592 5.00350 5.06141 5.11679 5.23709 5.28921 5.39409 5.46270 5.68607 5.73302 5.79186 6.29477 6.39969 7.06396 7.20090 7.91034 8.35005 9.26647 Molecular weight = 332.16amu Principal moments of inertia in cm(-1) A = 0.011018 B = 0.005151 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.775576 B = 5434.461958 C = 7343.072439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.137 3.863 3 C -0.163 4.163 4 N -0.593 5.593 5 C 0.092 3.908 6 C 0.138 3.862 7 N -0.613 5.613 8 C 0.177 3.823 9 C -0.253 4.253 10 H 0.086 0.914 11 C -0.054 4.054 12 N -0.942 5.942 13 Si 0.959 3.041 14 H -0.293 1.293 15 H -0.304 1.304 16 H -0.257 1.257 17 C 0.535 3.465 18 O -0.529 6.529 19 C -0.598 4.598 20 H 0.165 0.835 21 C -0.105 4.105 22 C -0.118 4.118 23 C -0.555 4.555 24 S 2.393 3.607 25 O -0.945 6.945 26 O -0.971 6.971 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.058 0.942 38 H -0.001 1.001 39 H 0.021 0.979 40 H 0.028 0.972 41 H 0.245 0.755 42 H 0.102 0.898 43 H 0.090 0.910 44 H 0.127 0.873 45 H 0.099 0.901 46 H 0.158 0.842 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.128 8.457 5.209 14.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.035 3.965 3 C -0.221 4.221 4 N -0.325 5.325 5 C -0.033 4.033 6 C 0.011 3.989 7 N -0.337 5.337 8 C 0.032 3.968 9 C -0.383 4.383 10 H 0.104 0.896 11 C -0.248 4.248 12 N -0.590 5.590 13 Si 0.788 3.212 14 H -0.220 1.220 15 H -0.231 1.231 16 H -0.181 1.181 17 C 0.320 3.680 18 O -0.406 6.406 19 C -0.707 4.707 20 H 0.183 0.817 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.689 4.689 24 S 2.577 3.423 25 O -0.942 6.942 26 O -0.968 6.968 27 H 0.103 0.897 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.017 0.983 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.121 0.879 43 H 0.109 0.891 44 H 0.145 0.855 45 H 0.117 0.883 46 H 0.177 0.823 47 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -11.337 8.734 5.219 15.233 hybrid contribution 1.474 -0.996 0.110 1.782 sum -9.863 7.738 5.330 13.622 Atomic orbital electron populations 1.22183 0.94714 1.02145 1.03473 1.21250 0.94630 0.93805 0.86833 1.22152 1.00877 0.95726 1.03331 1.48092 1.47369 1.31723 1.05358 1.22486 0.90528 0.86976 1.03303 1.21275 0.88587 0.88684 1.00347 1.44060 1.54451 1.32381 1.02774 1.20550 0.94681 0.97210 0.84378 1.19616 1.04485 1.23338 0.90828 0.89588 1.25723 0.96457 1.03068 0.99598 1.70249 1.14911 1.43200 1.30609 0.85380 0.76240 0.79209 0.80377 1.21996 1.23088 1.18130 1.19380 0.79700 0.84828 0.84052 1.90827 1.39390 1.24456 1.85961 1.30782 1.16940 1.10901 1.12113 0.81712 1.22087 0.92661 1.03637 0.95972 1.22332 0.96604 1.04240 0.92465 1.30495 1.10509 1.13278 1.14580 1.09054 0.78478 0.75286 0.79468 1.93621 1.60789 1.58130 1.81709 1.93570 1.79159 1.44362 1.79759 0.89667 0.92584 0.92764 0.87985 0.92241 0.92909 0.90111 0.90180 0.90201 0.93955 0.92382 0.98311 0.96057 0.95377 0.94610 0.87939 0.89133 0.85507 0.88255 0.82350 0.81770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 9.10 71.98 0.66 -3.27 16 2 C 0.14 3.28 3.28 44.99 0.15 3.43 16 3 C -0.16 -3.82 9.18 71.98 0.66 -3.16 16 4 N -0.59 -15.97 2.42 -797.85 -1.93 -17.90 16 5 C 0.09 2.64 5.60 86.38 0.48 3.12 16 6 C 0.14 4.69 5.98 86.38 0.52 5.21 16 7 N -0.61 -26.85 2.93 -726.92 -2.13 -28.98 16 8 C 0.18 8.02 8.96 127.77 1.15 9.17 16 9 C -0.25 -12.07 9.68 84.03 0.81 -11.26 16 10 H 0.09 3.75 7.57 -2.91 -0.02 3.72 16 11 C -0.05 -2.77 5.13 84.86 0.44 -2.33 16 12 N -0.94 -52.69 10.52 21.65 0.23 -52.46 16 13 Si 0.96 41.51 29.57 68.60 2.03 43.53 16 14 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 15 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 16 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 17 C 0.53 15.42 6.06 87.66 0.53 15.95 16 18 O -0.53 -17.74 10.66 19.30 0.21 -17.53 16 19 C -0.60 -14.52 2.90 30.24 0.09 -14.44 16 20 H 0.17 3.80 6.07 -2.38 -0.01 3.79 16 21 C -0.10 -2.13 5.20 31.28 0.16 -1.97 16 22 C -0.12 -1.70 6.48 31.59 0.20 -1.50 16 23 C -0.55 -7.79 7.31 72.68 0.53 -7.26 16 24 S 2.39 58.67 5.91 -56.49 -0.33 58.34 16 25 O -0.95 -30.85 15.56 -118.70 -1.85 -32.70 16 26 O -0.97 -29.35 18.15 -127.49 -2.31 -31.66 16 27 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.63 6.12 -2.39 -0.01 1.61 16 29 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 30 H 0.10 2.14 7.78 -2.39 -0.02 2.12 16 31 H 0.06 1.65 6.14 -2.39 -0.01 1.64 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.08 2.31 5.76 -2.39 -0.01 2.29 16 35 H 0.08 2.22 7.90 -2.39 -0.02 2.20 16 36 H 0.04 1.41 8.07 -2.38 -0.02 1.39 16 37 H 0.06 1.93 5.42 -2.39 -0.01 1.91 16 38 H 0.00 -0.07 7.48 -2.39 -0.02 -0.09 16 39 H 0.02 1.05 7.08 -2.38 -0.02 1.03 16 40 H 0.03 1.06 8.04 -2.38 -0.02 1.04 16 41 H 0.24 13.52 8.31 -92.71 -0.77 12.75 16 42 H 0.10 2.41 6.18 -2.39 -0.01 2.39 16 43 H 0.09 1.77 7.85 -2.38 -0.02 1.75 16 44 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 46 H 0.16 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.16 1.52 8.14 -2.39 -0.02 1.50 16 Total: -1.00 -72.41 372.81 1.24 -71.17 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: 0.96 Total: 16.49 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 6.38 Total: -8.30 kcal Atomic # 7 Polarization: -95.51 SS G_CDS: -3.83 Total: -99.34 kcal Atomic # 8 Polarization: -77.94 SS G_CDS: -3.95 Total: -81.89 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Atomic # 16 Polarization: 58.67 SS G_CDS: -0.33 Total: 58.34 kcal Total: -72.41 1.24 -71.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278929967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.152 kcal (2) G-P(sol) polarization free energy of solvation -72.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds